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Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region.

Kosecka-Strojek M, Sabat AJ, Akkerboom V, Becker K, van Zanten E, Wisselink G, Miedzobrodzki J, Kooistra-Smid AMDM, Friedrich AW.

Front Cell Infect Microbiol. 2019 Aug 7;9:278. doi: 10.3389/fcimb.2019.00278. eCollection 2019.


Daptomycin Resistant Staphylococcus aureus Clinical Strain With Novel Non-synonymous Mutations in the mprF and vraS Genes: A New Insight Into Daptomycin Resistance.

Sabat AJ, Tinelli M, Grundmann H, Akkerboom V, Monaco M, Del Grosso M, Errico G, Pantosti A, Friedrich AW.

Front Microbiol. 2018 Nov 6;9:2705. doi: 10.3389/fmicb.2018.02705. eCollection 2018.


Joint Genomic and Proteomic Analysis Identifies Meta-Trait Characteristics of Virulent and Non-virulent Staphylococcus aureus Strains.

Bonar EA, Bukowski M, Hydzik M, Jankowska U, Kedracka-Krok S, Groborz M, Dubin G, Akkerboom V, Miedzobrodzki J, Sabat AJ, Friedrich AW, Wladyka B.

Front Cell Infect Microbiol. 2018 Sep 6;8:313. doi: 10.3389/fcimb.2018.00313. eCollection 2018.


European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus.

Deplano A, Dodémont M, Denis O, Westh H, Gumpert H, Larsen AR, Larsen J, Kearns A, Pichon B, Layer F, Schulte B, Wolz C, Spiliopoulou I, Brennan G, Empel J, Hryniewicz W, de Lencastre H, Faria NA, Codita I, Sabat AJ, Friedrich AW, Deurenberg RH, Tristan A, Laurent F, Vandenesch F.

J Antimicrob Chemother. 2018 Oct 1;73(10):2662-2666. doi: 10.1093/jac/dky260.


PVL overexpression due to genomic rearrangements and mutations in the S. aureus reference strain ATCC25923.

Stieber B, Sabat A, Monecke S, Slickers P, Akkerboom V, Müller E, Friedrich AW, Ehricht R.

BMC Res Notes. 2017 Nov 7;10(1):576. doi: 10.1186/s13104-017-2891-3.


Comparative demography of two common scleractinian corals: Orbicella annularis and Porites astreoides.

Soto-Santiago FJ, Mercado-Molina A, Reyes-Maldonado K, Vélez Y, Ruiz-Díaz CP, Sabat A.

PeerJ. 2017 Oct 27;5:e3906. doi: 10.7717/peerj.3906. eCollection 2017.


Targeted next-generation sequencing of the 16S-23S rRNA region for culture-independent bacterial identification - increased discrimination of closely related species.

Sabat AJ, van Zanten E, Akkerboom V, Wisselink G, van Slochteren K, de Boer RF, Hendrix R, Friedrich AW, Rossen JWA, Kooistra-Smid AMDM.

Sci Rep. 2017 Jun 13;7(1):3434. doi: 10.1038/s41598-017-03458-6.


Complete-genome sequencing elucidates outbreak dynamics of CA-MRSA USA300 (ST8-spa t008) in an academic hospital of Paramaribo, Republic of Suriname.

Sabat AJ, Hermelijn SM, Akkerboom V, Juliana A, Degener JE, Grundmann H, Friedrich AW.

Sci Rep. 2017 Jan 20;7:41050. doi: 10.1038/srep41050.


Identification of Secreted Exoproteome Fingerprints of Highly-Virulent and Non-Virulent Staphylococcus aureus Strains.

Bonar E, Wojcik I, Jankowska U, Kedracka-Krok S, Bukowski M, Polakowska K, Lis MW, Kosecka-Strojek M, Sabat AJ, Dubin G, Friedrich AW, Miedzobrodzki J, Dubin A, Wladyka B.

Front Cell Infect Microbiol. 2016 May 6;6:51. doi: 10.3389/fcimb.2016.00051. eCollection 2016.


Clonal Structure and Characterization of Staphylococcus aureus Strains from Invasive Infections in Paediatric Patients from South Poland: Association between Age, spa Types, Clonal Complexes, and Genetic Markers.

Ilczyszyn WM, Sabat AJ, Akkerboom V, Szkarlat A, Klepacka J, Sowa-Sierant I, Wasik B, Kosecka-Strojek M, Buda A, Miedzobrodzki J, Friedrich AW.

PLoS One. 2016 Mar 18;11(3):e0151937. doi: 10.1371/journal.pone.0151937. eCollection 2016. Erratum in: PLoS One. 2016;11(4):e0154485.


The role of coral colony health state in the recovery of lesions.

Ruiz-Diaz CP, Toledo-Hernandez C, Mercado-Molina AE, Pérez ME, Sabat AM.

PeerJ. 2016 Jan 5;4:e1531. doi: 10.7717/peerj.1531. eCollection 2016.


Discovery of a secular trend in Cayo Santiago macaque reproduction.

Hernández-Pacheco R, Rawlins RG, Kessler MJ, Delgado DL, Ruiz-Lambides AV, Sabat AM.

Am J Primatol. 2016 Feb;78(2):227-37. doi: 10.1002/ajp.22502. Epub 2015 Nov 5.


A peptide factor secreted by Staphylococcus pseudintermedius exhibits properties of both bacteriocins and virulence factors.

Wladyka B, Piejko M, Bzowska M, Pieta P, Krzysik M, Mazurek Ł, Guevara-Lora I, Bukowski M, Sabat AJ, Friedrich AW, Bonar E, Międzobrodzki J, Dubin A, Mak P.

Sci Rep. 2015 Sep 28;5:14569. doi: 10.1038/srep14569.


Molecular Characterization of Staphylococcus aureus Isolates Transmitted between Patients with Buruli Ulcer.

Amissah NA, Chlebowicz MA, Ablordey A, Sabat AJ, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, van Dijl JM, Rossen JW, Stienstra Y.

PLoS Negl Trop Dis. 2015 Sep 11;9(9):e0004049. doi: 10.1371/journal.pntd.0004049. eCollection 2015.


Whole-genome analysis of an oxacillin-susceptible CC80 mecA-positive Staphylococcus aureus clinical isolate: insights into the mechanisms of cryptic methicillin resistance.

Sabat AJ, Pournaras S, Akkerboom V, Tsakris A, Grundmann H, Friedrich AW.

J Antimicrob Chemother. 2015 Nov;70(11):2956-64. doi: 10.1093/jac/dkv210. Epub 2015 Jul 20.


Driving Forces of Mechanisms Regulating Oxacillin-Resistance Phenotypes of MRSA: Truly Oxacillin-Susceptible mecA-Positive Staphylococcus aureus Clinical Isolates also Exist.

Pournaras S, Sabat AJ, Grundmann H, Hendrix R, Tsakris A, Friedrich AW.

Curr Pharm Des. 2015;21(16):2048-53. Review.


Genome-wide analysis reveals two novel mosaic regions containing an ACME with an identical DNA sequence in the MRSA ST398-t011 and MSSA ST8-t008 isolates.

Sabat AJ, Ilczyszyn WM, van Rijen M, Akkerboom V, Sinha B, Kluytmans J, Miedzobrodzki J, Grundmann H, Friedrich AW.

J Antimicrob Chemother. 2015 May;70(5):1298-302. doi: 10.1093/jac/dku531. Epub 2015 Jan 28.


Managing the Cayo Santiago rhesus macaque population: The role of density.

Hernandez-Pacheco R, Delgado DL, Rawlins RG, Kessler MJ, Ruiz-Lambides AV, Maldonado E, Sabat AM.

Am J Primatol. 2016 Jan;78(1):167-81. doi: 10.1002/ajp.22375. Epub 2015 Jan 16.


The dynamic changes of dominant clones of Staphylococcus aureus causing bloodstream infections in the European region: results of a second structured survey.

Grundmann H, Schouls LM, Aanensen DM, Pluister GN, Tami A, Chlebowicz M, Glasner C, Sabat AJ, Weist K, Heuer O, Friedrich AW; ESCMID Study Group on Molecular Epidemiological Markers; European Staphylococcal Reference Laboratory Working Group.

Euro Surveill. 2014 Dec 11;19(49). pii: 20987.


Long-term effects of tetanus toxoid inoculation on the demography and life expectancy of the Cayo Santiago rhesus macaques.

Kessler MJ, Hernández Pacheco R, Rawlins RG, Ruiz-Lambrides A, Delgado DL, Sabat AM.

Am J Primatol. 2015 Feb;77(2):211-21. doi: 10.1002/ajp.22323. Epub 2014 Sep 17.


Carriage of Staphylococcus aureus in Thika Level 5 Hospital, Kenya: a cross-sectional study.

Aiken AM, Mutuku IM, Sabat AJ, Akkerboom V, Mwangi J, Scott JA, Morpeth SC, Friedrich AW, Grundmann H.

Antimicrob Resist Infect Control. 2014 Jul 15;3:22. doi: 10.1186/2047-2994-3-22. eCollection 2014.


Novel organization of the arginine catabolic mobile element and staphylococcal cassette chromosome mec composite island and its horizontal transfer between distinct Staphylococcus aureus genotypes.

Sabat AJ, Köck R, Akkerboom V, Hendrix R, Skov RL, Becker K, Friedrich AW.

Antimicrob Agents Chemother. 2013 Nov;57(11):5774-7. doi: 10.1128/AAC.01321-13. Epub 2013 Sep 3.


Demographic variability and density-dependent dynamics of a free-ranging rhesus macaque population.

Hernández-Pacheco R, Rawlins RG, Kessler MJ, Williams LE, Ruiz-Maldonado TM, González-Martínez J, Ruiz-Lambides AV, Sabat AM.

Am J Primatol. 2013 Dec;75(12):1152-64. doi: 10.1002/ajp.22177. Epub 2013 Jul 11.


Topography of distinct Staphylococcus aureus types in chronic wounds of patients with epidermolysis bullosa.

van der Kooi-Pol MM, Sadaghian Sadabad M, Duipmans JC, Sabat AJ, Stobernack T, Omansen TF, Westerhout-Pluister GN, Jonkman MF, Harmsen HJ, van Dijl JM.

PLoS One. 2013 Jun 25;8(6):e67272. doi: 10.1371/journal.pone.0067272. Print 2013.


Distinction of Staphylococcal Cassette Chromosome mec type V elements from Staphylococcus aureus ST398.

Chlebowicz MA, Bosch T, Sabat AJ, Arends JP, Grundmann H, van Dijl JM, Buist G.

Int J Med Microbiol. 2013 Dec;303(8):422-32. doi: 10.1016/j.ijmm.2013.05.005. Epub 2013 May 28.


Immune response to a pathogen in corals.

Ruiz-Diaz CP, Toledo-Hernández C, Sabat AM, Marcano M.

J Theor Biol. 2013 Sep 7;332:141-8. doi: 10.1016/j.jtbi.2013.04.028. Epub 2013 May 6.


High-resolution typing by MLVF unveils extensive heterogeneity of European livestock-associated methicillin-resistant Staphylococcus aureus isolates with the sequence type 398.

Glasner C, Sabat AJ, Chlebowicz MA, Vanderhaeghen W, Fetsch A, Guerra B, Huber H, Stephan R, Torres C, Butaye P, Voss A, Wulf M, van Dijl JM.

Int J Med Microbiol. 2013 Apr;303(3):124-7. doi: 10.1016/j.ijmm.2013.02.015. Epub 2013 Mar 19.


Evaluation of a modular multiplex-PCR methicillin-resistant Staphylococcus aureus detection assay adapted for mecC detection.

Becker K, Larsen AR, Skov RL, Paterson GK, Holmes MA, Sabat AJ, Friedrich AW, Köck R, Peters G, Kriegeskorte A.

J Clin Microbiol. 2013 Jun;51(6):1917-9. doi: 10.1128/JCM.00075-13. Epub 2013 Mar 20.


Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution.

Carriço JA, Sabat AJ, Friedrich AW, Ramirez M; ESCMID Study Group for Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20382. Review.


Overview of molecular typing methods for outbreak detection and epidemiological surveillance.

Sabat AJ, Budimir A, Nashev D, Sá-Leão R, van Dijl Jm, Laurent F, Grundmann H, Friedrich AW; ESCMID Study Group of Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20380. Review.


Rapid and high-resolution distinction of community-acquired and nosocomial Staphylococcus aureus isolates with identical pulsed-field gel electrophoresis patterns and spa types.

Glasner C, Sabat AJ, Dreisbach A, Larsen AR, Friedrich AW, Skov RL, van Dijl JM.

Int J Med Microbiol. 2013 Mar;303(2):70-5. doi: 10.1016/j.ijmm.2012.12.005. Epub 2013 Jan 29.


Detection of new methicillin-resistant Staphylococcus aureus strains that carry a novel genetic homologue and important virulence determinants.

Sabat AJ, Koksal M, Akkerboom V, Monecke S, Kriegeskorte A, Hendrix R, Ehricht R, Köck R, Becker K, Friedrich AW.

J Clin Microbiol. 2012 Oct;50(10):3374-7. doi: 10.1128/JCM.01121-12. Epub 2012 Jul 25.


Microfluidic-chip-based multiple-locus variable-number tandem-repeat fingerprinting with new primer sets for methicillin-resistant Staphylococcus aureus.

Sabat AJ, Chlebowicz MA, Grundmann H, Arends JP, Kampinga G, Meessen NE, Friedrich AW, van Dijl JM.

J Clin Microbiol. 2012 Jul;50(7):2255-62. doi: 10.1128/JCM.00056-12. Epub 2012 May 9.


Proteomic analysis and identification of the structural and regulatory proteins of the Rhodobacter capsulatus gene transfer agent.

Chen F, Spano A, Goodman BE, Blasier KR, Sabat A, Jeffery E, Norris A, Shabanowitz J, Hunt DF, Lebedev N.

J Proteome Res. 2009 Feb;8(2):967-73. doi: 10.1021/pr8006045.


A novel member of the thermolysin family, cloning and biochemical characterization of metalloprotease from Staphylococcus pseudintermedius.

Wladyka B, Bista M, Sabat AJ, Bonar E, Grzeszczuk S, Hryniewicz W, Dubin A.

Acta Biochim Pol. 2008;55(3):525-36. Epub 2008 Sep 4.


Polymorphism, genetic exchange and intragenic recombination of the aureolysin gene among Staphylococcus aureus strains.

Sabat AJ, Wladyka B, Kosowska-Shick K, Grundmann H, van Dijl JM, Kowal J, Appelbaum PC, Dubin A, Hryniewicz W.

BMC Microbiol. 2008 Jul 29;8:129. doi: 10.1186/1471-2180-8-129.


Usefulness of multiple-locus VNTR fingerprinting in detection of clonality of community- and hospital-acquired Staphylococcus aureus isolates.

Luczak-Kadlubowska A, Sabat A, Tambic-Andrasevic A, Payerl-Pal M, Krzyszton-Russjan J, Hryniewicz W.

Antonie Van Leeuwenhoek. 2008 Nov;94(4):543-53. doi: 10.1007/s10482-008-9271-x. Epub 2008 Jul 27.


In vitro assembly of a prohead-like structure of the Rhodobacter capsulatus gene transfer agent.

Spano AJ, Chen FS, Goodman BE, Sabat AE, Simon MN, Wall JS, Correia JJ, McIvor W, Newcomb WW, Brown JC, Schnur JM, Lebedev N.

Virology. 2007 Jul 20;364(1):95-102. Epub 2007 Apr 3.


Comparison of PCR-based methods for typing Staphylococcus aureus isolates.

Sabat A, Malachowa N, Miedzobrodzki J, Hryniewicz W.

J Clin Microbiol. 2006 Oct;44(10):3804-7.


First community-acquired methicillin-resistant Staphylococcus aureus (MRSA) strains in Croatia.

Krzysztoń-Russjan J, Tambic-Andrasevic A, Bukovski S, Sabat A, Hryniewicz W.

Clin Microbiol Infect. 2006 Jul;12(7):697-8. No abstract available.


Distribution of the serine-aspartate repeat protein-encoding sdr genes among nasal-carriage and invasive Staphylococcus aureus strains.

Sabat A, Melles DC, Martirosian G, Grundmann H, van Belkum A, Hryniewicz W.

J Clin Microbiol. 2006 Mar;44(3):1135-8.


Identity construction following traumatic brain injury: a case study.

Sabat A, Moodley L, Kathard H.

S Afr J Commun Disord. 2006;53:17-26.


Comparison of multiple-locus variable-number tandem-repeat analysis with pulsed-field gel electrophoresis, spa typing, and multilocus sequence typing for clonal characterization of Staphylococcus aureus isolates.

Malachowa N, Sabat A, Gniadkowski M, Krzyszton-Russjan J, Empel J, Miedzobrodzki J, Kosowska-Shick K, Appelbaum PC, Hryniewicz W.

J Clin Microbiol. 2005 Jul;43(7):3095-100.


Genetic characterization of staphopain genes in Staphylococcus aureus.

Golonka E, Filipek R, Sabat A, Sinczak A, Potempa J.

Biol Chem. 2004 Nov;385(11):1059-67.


Prostaphopain B structure: a comparison of proregion-mediated and staphostatin-mediated protease inhibition.

Filipek R, Szczepanowski R, Sabat A, Potempa J, Bochtler M.

Biochemistry. 2004 Nov 9;43(44):14306-15.


Staphostatins resemble lipocalins, not cystatins in fold.

Rzychon M, Filipek R, Sabat A, Kosowska K, Dubin A, Potempa J, Bochtler M.

Protein Sci. 2003 Oct;12(10):2252-6.


New method for typing Staphylococcus aureus strains: multiple-locus variable-number tandem repeat analysis of polymorphism and genetic relationships of clinical isolates.

Sabat A, Krzyszton-Russjan J, Strzalka W, Filipek R, Kosowska K, Hryniewicz W, Travis J, Potempa J.

J Clin Microbiol. 2003 Apr;41(4):1801-4.

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