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Items: 48

1.

Correction to: Documenting lemming population change in the Arctic: Can we detect trends?

Ehrich D, Schmidt NM, Gauthier G, Alisauskas R, Angerbjörn A, Clark K, Ecke F, Eide NE, Framstad E, Frandsen J, Franke A, Gilg O, Giroux MA, Henttonen H, Hörnfeldt B, Ims RA, Kataev GD, Kharitonov SP, Killengreen ST, Krebs CJ, Lanctot RB, Lecomte N, Menyushina IE, Morris DW, Morrisson G, Oksanen L, Oksanen T, Olofsson J, Pokrovsky IG, Popov IY, Reid D, Roth JD, Saalfeld ST, Samelius G, Sittler B, Sleptsov SM, Smith PA, Sokolov AA, Sokolova NA, Soloviev MY, Solovyeva DV.

Ambio. 2019 Oct 11. doi: 10.1007/s13280-019-01262-2. [Epub ahead of print]

PMID:
31605369
2.

Flow-splitting-based computation of outlet boundary conditions for improved cerebrovascular simulation in multiple intracranial aneurysms.

Saalfeld S, Voß S, Beuing O, Preim B, Berg P.

Int J Comput Assist Radiol Surg. 2019 Jul 30. doi: 10.1007/s11548-019-02036-7. [Epub ahead of print]

PMID:
31363984
3.

Documenting lemming population change in the Arctic: Can we detect trends?

Ehrich D, Schmidt NM, Gauthier G, Alisauskas R, Angerbjörn A, Clark K, Ecke F, Eide NE, Framstad E, Frandsen J, Franke A, Gilg O, Giroux MA, Henttonen H, Hörnfeldt B, Ims RA, Kataev GD, Kharitonov SP, Killengreen ST, Krebs CJ, Lanctot RB, Lecomte N, Menyushina IE, Morris DW, Morrisson G, Oksanen L, Oksanen T, Olofsson J, Pokrovsky IG, Popov IY, Reid D, Roth JD, Saalfeld ST, Samelius G, Sittler B, Sleptsov SM, Smith PA, Sokolov AA, Sokolova NA, Soloviev MY, Solovyeva DV.

Ambio. 2019 Jul 22. doi: 10.1007/s13280-019-01198-7. [Epub ahead of print] Erratum in: Ambio. 2019 Oct 11;:.

PMID:
31332767
4.

Computational methods for stitching, alignment, and artifact correction of serial section data.

Saalfeld S.

Methods Cell Biol. 2019;152:261-276. doi: 10.1016/bs.mcb.2019.04.007. Epub 2019 May 23.

PMID:
31326024
5.

A review on the reliability of hemodynamic modeling in intracranial aneurysms: why computational fluid dynamics alone cannot solve the equation.

Berg P, Saalfeld S, Voß S, Beuing O, Janiga G.

Neurosurg Focus. 2019 Jul 1;47(1):E15. doi: 10.3171/2019.4.FOCUS19181.

PMID:
31261119
6.

Phenological mismatch in Arctic-breeding shorebirds: Impact of snowmelt and unpredictable weather conditions on food availability and chick growth.

Saalfeld ST, McEwen DC, Kesler DC, Butler MG, Cunningham JA, Doll AC, English WB, Gerik DE, Grond K, Herzog P, Hill BL, Lagassé BJ, Lanctot RB.

Ecol Evol. 2019 May 16;9(11):6693-6707. doi: 10.1002/ece3.5248. eCollection 2019 Jun.

7.

Suitability of intravascular imaging for assessment of cerebrovascular diseases.

Weigand S, Saalfeld S, Hoffmann T, Eppler E, Kalinski T, Jachau K, Skalej M.

Neuroradiology. 2019 Sep;61(9):1093-1101. doi: 10.1007/s00234-019-02233-w. Epub 2019 Jun 15.

PMID:
31203414
8.

Comment on "Global pattern of nest predation is disrupted by climate change in shorebirds".

Bulla M, Reneerkens J, Weiser EL, Sokolov A, Taylor AR, Sittler B, McCaffery BJ, Ruthrauff DR, Catlin DH, Payer DC, Ward DH, Solovyeva DV, Santos ESA, Rakhimberdiev E, Nol E, Kwon E, Brown GS, Hevia GD, Gates HR, Johnson JA, van Gils JA, Hansen J, Lamarre JF, Rausch J, Conklin JR, Liebezeit J, Bêty J, Lang J, Alves JA, Fernández-Elipe J, Exo KM, Bollache L, Bertellotti M, Giroux MA, van de Pol M, Johnson M, Boldenow ML, Valcu M, Soloviev M, Sokolova N, Senner NR, Lecomte N, Meyer N, Schmidt NM, Gilg O, Smith PA, Machín P, McGuire RL, Cerboncini RAS, Ottvall R, van Bemmelen RSA, Swift RJ, Saalfeld ST, Jamieson SE, Brown S, Piersma T, Albrecht T, D'Amico V, Lanctot RB, Kempenaers B.

Science. 2019 Jun 14;364(6445). pii: eaaw8529. doi: 10.1126/science.aaw8529.

PMID:
31196986
9.

Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)-phase II: rupture risk assessment.

Berg P, Voß S, Janiga G, Saalfeld S, Bergersen AW, Valen-Sendstad K, Bruening J, Goubergrits L, Spuler A, Chiu TL, Tsang ACO, Copelli G, Csippa B, Paál G, Závodszky G, Detmer FJ, Chung BJ, Cebral JR, Fujimura S, Takao H, Karmonik C, Elias S, Cancelliere NM, Najafi M, Steinman DA, Pereira VM, Piskin S, Finol EA, Pravdivtseva M, Velvaluri P, Rajabzadeh-Oghaz H, Paliwal N, Meng H, Seshadhri S, Venguru S, Shojima M, Sindeev S, Frolov S, Qian Y, Wu YA, Carlson KD, Kallmes DF, Dragomir-Daescu D, Beuing O.

Int J Comput Assist Radiol Surg. 2019 May 3. doi: 10.1007/s11548-019-01986-2. [Epub ahead of print]

PMID:
31054128
10.

A two-step risk assessment method for radiofrequency ablations of spine metastases.

Merten N, Adler S, Hille G, Hanses M, Becker M, Saalfeld S, Preim B.

Comput Biol Med. 2019 May;108:174-181. doi: 10.1016/j.compbiomed.2019.03.007. Epub 2019 Mar 16.

PMID:
31005009
11.

Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH): uncertainty quantification of geometric rupture risk parameters.

Goubergrits L, Hellmeier F, Bruening J, Spuler A, Hege HC, Voss S, Janiga G, Saalfeld S, Beuing O, Berg P.

Biomed Eng Online. 2019 Mar 25;18(1):35. doi: 10.1186/s12938-019-0657-y.

12.

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu TL, Singh V, Graves A, Huynh GH, Zhao Y, Bogovic J, Colonell J, Ott CM, Zugates C, Tappan S, Rodriguez A, Mosaliganti KR, Sheu SH, Pasolli HA, Pang S, Xu CS, Megason SG, Hess H, Lippincott-Schwartz J, Hantman A, Rubin GM, Kirchhausen T, Saalfeld S, Aso Y, Boyden ES, Betzig E.

Science. 2019 Jan 18;363(6424). pii: eaau8302. doi: 10.1126/science.aau8302.

13.

3DRA Reconstruction of Intracranial Aneurysms - How does Voxel Size Influences Morphologic and Hemodynamic Parameters.

Berg P, Radtke L, Vos S, Serowy S, Janiga G, Preim B, Beuing O, Saalfeld S.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:1327-1330. doi: 10.1109/EMBC.2018.8512524.

PMID:
30440636
14.

Flower-visitor communities of an arcto-alpine plant-Global patterns in species richness, phylogenetic diversity and ecological functioning.

Tiusanen M, Huotari T, Hebert PDN, Andersson T, Asmus A, Bêty J, Davis E, Gale J, Hardwick B, Hik D, Körner C, Lanctot RB, Loonen MJJE, Partanen R, Reischke K, Saalfeld ST, Senez-Gagnon F, Smith PA, Šulavík J, Syvänperä I, Urbanowicz C, Williams S, Woodard P, Zaika Y, Roslin T.

Mol Ecol. 2019 Jan;28(2):318-335. doi: 10.1111/mec.14932. Epub 2018 Dec 7.

15.

Multi-segmental spine image registration supporting image-guided interventions of spinal metastases.

Hille G, Saalfeld S, Serowy S, Tönnies K.

Comput Biol Med. 2018 Nov 1;102:16-20. doi: 10.1016/j.compbiomed.2018.09.003. Epub 2018 Sep 13.

PMID:
30236968
16.

Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH): Phase I: Segmentation.

Berg P, Voß S, Saalfeld S, Janiga G, Bergersen AW, Valen-Sendstad K, Bruening J, Goubergrits L, Spuler A, Cancelliere NM, Steinman DA, Pereira VM, Chiu TL, Tsang ACO, Chung BJ, Cebral JR, Cito S, Pallarès J, Copelli G, Csippa B, Paál G, Fujimura S, Takao H, Hodis S, Hille G, Karmonik C, Elias S, Kellermann K, Khan MO, Marsden AL, Morales HG, Piskin S, Finol EA, Pravdivtseva M, Rajabzadeh-Oghaz H, Paliwal N, Meng H, Seshadhri S, Howard M, Shojima M, Sugiyama SI, Niizuma K, Sindeev S, Frolov S, Wagner T, Brawanski A, Qian Y, Wu YA, Carlson KD, Dragomir-Daescu D, Beuing O.

Cardiovasc Eng Technol. 2018 Dec;9(4):565-581. doi: 10.1007/s13239-018-00376-0. Epub 2018 Sep 6.

PMID:
30191538
17.

Semiautomatic neck curve reconstruction for intracranial aneurysm rupture risk assessment based on morphological parameters.

Saalfeld S, Berg P, Niemann A, Luz M, Preim B, Beuing O.

Int J Comput Assist Radiol Surg. 2018 Nov;13(11):1781-1793. doi: 10.1007/s11548-018-1848-x. Epub 2018 Aug 29.

PMID:
30159832
18.

A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.

Zheng Z, Lauritzen JS, Perlman E, Robinson CG, Nichols M, Milkie D, Torrens O, Price J, Fisher CB, Sharifi N, Calle-Schuler SA, Kmecova L, Ali IJ, Karsh B, Trautman ET, Bogovic JA, Hanslovsky P, Jefferis GSXE, Kazhdan M, Khairy K, Saalfeld S, Fetter RD, Bock DD.

Cell. 2018 Jul 26;174(3):730-743.e22. doi: 10.1016/j.cell.2018.06.019. Epub 2018 Jul 19.

19.

Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction.

Funke J, Tschopp F, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.

IEEE Trans Pattern Anal Mach Intell. 2019 Jul;41(7):1669-1680. doi: 10.1109/TPAMI.2018.2835450. Epub 2018 May 24.

PMID:
29993708
20.

Virtual stenting of intracranial aneurysms: A pilot study for the prediction of treatment success based on hemodynamic simulations.

Berg P, Saalfeld S, Janiga G, Brina O, Cancelliere NM, Machi P, Pereira VM.

Int J Artif Organs. 2018 Nov;41(11):698-705. doi: 10.1177/0391398818775521. Epub 2018 May 21.

PMID:
29783867
21.

Vertebral body segmentation in wide range clinical routine spine MRI data.

Hille G, Saalfeld S, Serowy S, Tönnies K.

Comput Methods Programs Biomed. 2018 Mar;155:93-99. doi: 10.1016/j.cmpb.2017.12.013. Epub 2017 Dec 12.

PMID:
29512508
22.

Multispecies comparisons of adaptability to climate change: A role for life-history characteristics?

Saalfeld ST, Lanctot RB.

Ecol Evol. 2017 Nov 1;7(24):10492-10502. doi: 10.1002/ece3.3517. eCollection 2017 Dec.

23.

Epidemiologic surveillance of multidrug-resistant bacteria in a teaching hospital: A 3-year experience.

Zarpellon MN, Viana GF, Mitsugui CS, Costa BB, Tamura NK, Aoki EE, Helbel C, Nishiyama SAB, Saalfeld SMDS, Tognim MCB.

Am J Infect Control. 2018 Apr;46(4):387-392. doi: 10.1016/j.ajic.2017.10.012. Epub 2017 Dec 6.

PMID:
29217187
24.

Building bridges between cellular and molecular structural biology.

Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ.

Elife. 2017 Jul 6;6. pii: e25835. doi: 10.7554/eLife.25835.

25.

Whole-brain serial-section electron microscopy in larval zebrafish.

Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WA, Jeong WK, Lichtman JW, Engert F.

Nature. 2017 May 18;545(7654):345-349. doi: 10.1038/nature22356. Epub 2017 May 10.

26.

Does the DSA reconstruction kernel affect hemodynamic predictions in intracranial aneurysms? An analysis of geometry and blood flow variations.

Berg P, Saalfeld S, Voß S, Redel T, Preim B, Janiga G, Beuing O.

J Neurointerv Surg. 2018 Mar;10(3):290-296. doi: 10.1136/neurintsurg-2017-012996. Epub 2017 May 2.

PMID:
28465404
27.

Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy.

Hanslovsky P, Bogovic JA, Saalfeld S.

Bioinformatics. 2017 May 1;33(9):1379-1386. doi: 10.1093/bioinformatics/btw794.

28.

PreMosa: extracting 2D surfaces from 3D microscopy mosaics.

Blasse C, Saalfeld S, Etournay R, Sagner A, Eaton S, Myers EW.

Bioinformatics. 2017 Aug 15;33(16):2563-2569. doi: 10.1093/bioinformatics/btx195.

PMID:
28383656
29.

Unexpected diversity in socially synchronized rhythms of shorebirds.

Bulla M, Valcu M, Dokter AM, Dondua AG, Kosztolányi A, Rutten AL, Helm B, Sandercock BK, Casler B, Ens BJ, Spiegel CS, Hassell CJ, Küpper C, Minton C, Burgas D, Lank DB, Payer DC, Loktionov EY, Nol E, Kwon E, Smith F, Gates HR, Vitnerová H, Prüter H, Johnson JA, St Clair JJ, Lamarre JF, Rausch J, Reneerkens J, Conklin JR, Burger J, Liebezeit J, Bêty J, Coleman JT, Figuerola J, Hooijmeijer JC, Alves JA, Smith JA, Weidinger K, Koivula K, Gosbell K, Exo KM, Niles L, Koloski L, McKinnon L, Praus L, Klaassen M, Giroux MA, Sládeček M, Boldenow ML, Goldstein MI, Šálek M, Senner N, Rönkä N, Lecomte N, Gilg O, Vincze O, Johnson OW, Smith PA, Woodard PF, Tomkovich PS, Battley PF, Bentzen R, Lanctot RB, Porter R, Saalfeld ST, Freeman S, Brown SC, Yezerinac S, Székely T, Montalvo T, Piersma T, Loverti V, Pakanen VM, Tijsen W, Kempenaers B.

Nature. 2016 Dec 1;540(7631):109-113. doi: 10.1038/nature20563. Epub 2016 Nov 23.

PMID:
27880762
30.

Effects of geolocators on hatching success, return rates, breeding movements, and change in body mass in 16 species of Arctic-breeding shorebirds.

Weiser EL, Lanctot RB, Brown SC, Alves JA, Battley PF, Bentzen R, Bêty J, Bishop MA, Boldenow M, Bollache L, Casler B, Christie M, Coleman JT, Conklin JR, English WB, Gates HR, Gilg O, Giroux MA, Gosbell K, Hassell C, Helmericks J, Johnson A, Katrínardóttir B, Koivula K, Kwon E, Lamarre JF, Lang J, Lank DB, Lecomte N, Liebezeit J, Loverti V, McKinnon L, Minton C, Mizrahi D, Nol E, Pakanen VM, Perz J, Porter R, Rausch J, Reneerkens J, Rönkä N, Saalfeld S, Senner N, Sittler B, Smith PA, Sowl K, Taylor A, Ward DH, Yezerinac S, Sandercock BK.

Mov Ecol. 2016 Apr 29;4:12. doi: 10.1186/s40462-016-0077-6. eCollection 2016.

31.

Quantitative neuroanatomy for connectomics in Drosophila.

Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart MF, Champion A, Midgley FM, Fetter RD, Saalfeld S, Cardona A.

Elife. 2016 Mar 18;5. pii: e12059. doi: 10.7554/eLife.12059.

32.

BigDataViewer: visualization and processing for large image data sets.

Pietzsch T, Saalfeld S, Preibisch S, Tomancak P.

Nat Methods. 2015 Jun;12(6):481-3. doi: 10.1038/nmeth.3392. No abstract available.

PMID:
26020499
33.

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.

Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P.

Elife. 2015 Apr 2;4. doi: 10.7554/eLife.05003.

34.

Can ampicillin/sulbactam resistance in Acinetobacter baumannii be predicted accurately by disk diffusion?

Viana GF, Saalfeld SM, Moreira RR, Menegucci TC, Garcia LB, Cardoso CL, Marroni FE, Tognim MC.

J Glob Antimicrob Resist. 2013 Dec;1(4):221-223. doi: 10.1016/j.jgar.2013.07.001. Epub 2013 Aug 15.

PMID:
27873617
35.

ImgLib2--generic image processing in Java.

Pietzsch T, Preibisch S, Tomancák P, Saalfeld S.

Bioinformatics. 2012 Nov 15;28(22):3009-11. doi: 10.1093/bioinformatics/bts543. Epub 2012 Sep 8. Erratum in: Bioinformatics. 2013 Jan 15;29(2):298.

36.

Fiji: an open-source platform for biological-image analysis.

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A.

Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019.

37.

TrakEM2 software for neural circuit reconstruction.

Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.

PLoS One. 2012;7(6):e38011. doi: 10.1371/journal.pone.0038011. Epub 2012 Jun 19.

38.

Elastic volume reconstruction from series of ultra-thin microscopy sections.

Saalfeld S, Fetter R, Cardona A, Tomancak P.

Nat Methods. 2012 Jun 10;9(7):717-20. doi: 10.1038/nmeth.2072.

PMID:
22688414
39.

An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.

Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V.

PLoS Biol. 2010 Oct 5;8(10). pii: e1000502. doi: 10.1371/journal.pbio.1000502.

40.

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.

Saalfeld S, Cardona A, Hartenstein V, Tomančák P.

Bioinformatics. 2010 Jun 15;26(12):i57-63. doi: 10.1093/bioinformatics/btq219.

41.

Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts.

Cardona A, Saalfeld S, Arganda I, Pereanu W, Schindelin J, Hartenstein V.

J Neurosci. 2010 Jun 2;30(22):7538-53. doi: 10.1523/JNEUROSCI.0186-10.2010.

42.

Software for bead-based registration of selective plane illumination microscopy data.

Preibisch S, Saalfeld S, Schindelin J, Tomancak P.

Nat Methods. 2010 Jun;7(6):418-9. doi: 10.1038/nmeth0610-418. No abstract available.

PMID:
20508634
43.

Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach.

Cardona A, Saalfeld S, Tomancak P, Hartenstein V.

Cold Spring Harb Symp Quant Biol. 2009;74:235-48. doi: 10.1101/sqb.2009.74.037. Epub 2009 Dec 22.

44.

CATMAID: collaborative annotation toolkit for massive amounts of image data.

Saalfeld S, Cardona A, Hartenstein V, Tomancak P.

Bioinformatics. 2009 Aug 1;25(15):1984-6. doi: 10.1093/bioinformatics/btp266. Epub 2009 Apr 17.

45.

Globally optimal stitching of tiled 3D microscopic image acquisitions.

Preibisch S, Saalfeld S, Tomancak P.

Bioinformatics. 2009 Jun 1;25(11):1463-5. doi: 10.1093/bioinformatics/btp184. Epub 2009 Apr 3.

46.

[BiPAP therapy of respiratory disorders in patients with congenital neuromuscular diseases].

Müller-Pawlowski H, von Moers A, Raffenberg M, Petri M, Saalfeld S, Lode H.

Med Klin (Munich). 1995 Apr;90(1 Suppl 1):35-8. German.

PMID:
7616916
47.

[Use of microcomputers in polysomnography].

Freitag L, Teschler H, Schroer M, Saalfeld S, Konietzko N.

Pneumologie. 1989 Nov;43 Suppl 1:607-10. German.

PMID:
2608653
48.

Automatic thoughts questionnaire: a study of concurrent validity.

Deardorff PA, McIntosh JA, Adamek CA, Bier M, Saalfeld S.

Psychol Rep. 1985 Dec;57(3 Pt 1):831-4. No abstract available.

PMID:
4080913

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