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Items: 1 to 50 of 140

1.

A Guide to the Chloroplast Transcriptome Analysis Using RNA-Seq.

Michel EJS, Hotto AM, Strickler SR, Stern DB, Castandet B.

Methods Mol Biol. 2018;1829:295-313. doi: 10.1007/978-1-4939-8654-5_20.

PMID:
29987730
2.

How Does History Become Accessible? Reconstruction as an Emergent Product of the Interpersonal Field.

Stern DB.

J Am Psychoanal Assoc. 2018 Jun;66(3):493-506. doi: 10.1177/0003065118781493. No abstract available.

PMID:
29975131
3.

The evolution of gene expression underlying vision loss in cave animals.

Stern DB, Crandall KA.

Mol Biol Evol. 2018 May 21. doi: 10.1093/molbev/msy106. [Epub ahead of print]

PMID:
29788330
4.

Phototransduction gene expression and evolution in cave and surface crayfishes.

Stern DB, Crandall KA.

Integr Comp Biol. 2018 May 14. doi: 10.1093/icb/icy029. [Epub ahead of print]

PMID:
29762661
5.

Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end.

Stern DB, Breinholt J, Pedraza-Lara C, López-Mejía M, Owen CL, Bracken-Grissom H, Fetzner JW Jr, Crandall KA.

Evolution. 2017 Oct;71(10):2522-2532. doi: 10.1111/evo.13326. Epub 2017 Sep 20.

6.

Unformulated experience, dissociation, and Nachträglichkeit.

Stern DB.

J Anal Psychol. 2017 Sep;62(4):501-525. doi: 10.1111/1468-5922.12334. Review.

PMID:
28776648
7.

DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants.

Stern DB, Castro Nallar E, Rathod J, Crandall KA.

PeerJ. 2017 Apr 25;5:e3234. doi: 10.7717/peerj.3234. eCollection 2017.

8.

ChloroSeq, an Optimized Chloroplast RNA-Seq Bioinformatic Pipeline, Reveals Remodeling of the Organellar Transcriptome Under Heat Stress.

Castandet B, Hotto AM, Strickler SR, Stern DB.

G3 (Bethesda). 2016 Sep 8;6(9):2817-27. doi: 10.1534/g3.116.030783.

9.

Activation of an Endoribonuclease by Non-intein Protein Splicing.

Campbell SJ, Stern DB.

J Biol Chem. 2016 Jul 29;291(31):15911-15922. doi: 10.1074/jbc.M116.727768. Epub 2016 Jun 16.

10.

Age-related striatal BOLD changes without changes in behavioral loss aversion.

Viswanathan V, Lee S, Gilman JM, Kim BW, Lee N, Chamberlain L, Livengood SL, Raman K, Lee MJ, Kuster J, Stern DB, Calder B, Mulhern FJ, Blood AJ, Breiter HC.

Front Hum Neurosci. 2015 Apr 30;9:176. doi: 10.3389/fnhum.2015.00176. eCollection 2015.

11.

Arabidopsis chloroplast mini-ribonuclease III participates in rRNA maturation and intron recycling.

Hotto AM, Castandet B, Gilet L, Higdon A, Condon C, Stern DB.

Plant Cell. 2015 Mar;27(3):724-40. doi: 10.1105/tpc.114.134452. Epub 2015 Feb 27.

12.

Redefining neuromarketing as an integrated science of influence.

Breiter HC, Block M, Blood AJ, Calder B, Chamberlain L, Lee N, Livengood S, Mulhern FJ, Raman K, Schultz D, Stern DB, Viswanathan V, Zhang FZ.

Front Hum Neurosci. 2015 Feb 12;8:1073. doi: 10.3389/fnhum.2014.01073. eCollection 2014.

13.

A response to LaFarge.

Stern DB.

Int J Psychoanal. 2014 Dec;95(6):1283-97. doi: 10.1111/1745-8315.12291. No abstract available.

PMID:
25532735
14.

The relationship between self-report of depression and media usage.

Block M, Stern DB, Raman K, Lee S, Carey J, Humphreys AA, Mulhern F, Calder B, Schultz D, Rudick CN, Blood AJ, Breiter HC.

Front Hum Neurosci. 2014 Sep 12;8:712. doi: 10.3389/fnhum.2014.00712. eCollection 2014.

15.

A protein with an inactive pterin-4a-carbinolamine dehydratase domain is required for Rubisco biogenesis in plants.

Feiz L, Williams-Carrier R, Belcher S, Montano M, Barkan A, Stern DB.

Plant J. 2014 Dec;80(5):862-9. doi: 10.1111/tpj.12686.

16.

Strand-specific RNA sequencing uncovers chloroplast ribonuclease functions.

Castandet B, Hotto AM, Fei Z, Stern DB.

FEBS Lett. 2013 Sep 17;587(18):3096-101. doi: 10.1016/j.febslet.2013.08.004. Epub 2013 Aug 14.

17.

RNase J participates in a pentatricopeptide repeat protein-mediated 5' end maturation of chloroplast mRNAs.

Luro S, Germain A, Sharwood RE, Stern DB.

Nucleic Acids Res. 2013 Oct;41(19):9141-51. doi: 10.1093/nar/gkt640. Epub 2013 Aug 6.

18.

Relational freedom and therapeutic action.

Stern DB.

J Am Psychoanal Assoc. 2013 Apr;61(2):227-56. doi: 10.1177/0003065113484060. Epub 2013 Mar 28.

PMID:
23539661
19.

RNA processing and decay in plastids.

Germain A, Hotto AM, Barkan A, Stern DB.

Wiley Interdiscip Rev RNA. 2013 May-Jun;4(3):295-316. doi: 10.1002/wrna.1161. Epub 2013 Mar 27. Review.

PMID:
23536311
20.

Arabidopsis chloroplast quantitative editotype.

Ruwe H, Castandet B, Schmitz-Linneweber C, Stern DB.

FEBS Lett. 2013 May 2;587(9):1429-33. doi: 10.1016/j.febslet.2013.03.022. Epub 2013 Mar 21.

21.

Ribonuclease II preserves chloroplast RNA homeostasis by increasing mRNA decay rates, and cooperates with polynucleotide phosphorylase in 3' end maturation.

Germain A, Kim SH, Gutierrez R, Stern DB.

Plant J. 2012 Dec;72(6):960-71. doi: 10.1111/tpj.12006. Epub 2012 Oct 18.

22.

Plastid non-coding RNAs: emerging candidates for gene regulation.

Hotto AM, Germain A, Stern DB.

Trends Plant Sci. 2012 Dec;17(12):737-44. doi: 10.1016/j.tplants.2012.08.002. Epub 2012 Sep 13. Review.

PMID:
22981395
23.

Ribulose-1,5-bis-phosphate carboxylase/oxygenase accumulation factor1 is required for holoenzyme assembly in maize.

Feiz L, Williams-Carrier R, Wostrikoff K, Belcher S, Barkan A, Stern DB.

Plant Cell. 2012 Aug;24(8):3435-46. Epub 2012 Aug 31.

24.

More meaning: commentary on Vivona.

Stern DB.

J Am Psychoanal Assoc. 2012 Apr;60(2):297-303; discussion 305-10. doi: 10.1177/0003065112440728. No abstract available.

PMID:
22582319
25.
26.

Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome.

Hotto AM, Schmitz RJ, Fei Z, Ecker JR, Stern DB.

G3 (Bethesda). 2011 Dec;1(7):559-70. doi: 10.1534/g3.111.000752. Epub 2011 Dec 1.

27.

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.

Sharwood RE, Halpert M, Luro S, Schuster G, Stern DB.

RNA. 2011 Dec;17(12):2165-76. doi: 10.1261/rna.028043.111. Epub 2011 Oct 27.

28.

Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation.

Germain A, Herlich S, Larom S, Kim SH, Schuster G, Stern DB.

Plant J. 2011 Aug;67(3):381-94. doi: 10.1111/j.1365-313X.2011.04601.x. Epub 2011 May 25.

29.

Developmental and cell type characterization of bundle sheath and mesophyll chloroplast transcript abundance in maize.

Sharpe RM, Mahajan A, Takacs EM, Stern DB, Cahoon AB.

Curr Genet. 2011 Apr;57(2):89-102. doi: 10.1007/s00294-010-0329-8. Epub 2010 Dec 10.

PMID:
21152918
30.

Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro.

Sharwood RE, Hotto AM, Bollenbach TJ, Stern DB.

RNA. 2011 Feb;17(2):230-43. doi: 10.1261/rna.2336611. Epub 2010 Dec 9.

31.

Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth.

Hotto AM, Huston ZE, Stern DB.

BMC Plant Biol. 2010 Sep 29;10:213. doi: 10.1186/1471-2229-10-213.

32.
33.

Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize.

Williams-Carrier R, Stiffler N, Belcher S, Kroeger T, Stern DB, Monde RA, Coalter R, Barkan A.

Plant J. 2010 Jul 1;63(1):167-77. doi: 10.1111/j.1365-313X.2010.04231.x. Epub 2010 Apr 19.

34.

Chloroplast RNA metabolism.

Stern DB, Goldschmidt-Clermont M, Hanson MR.

Annu Rev Plant Biol. 2010;61:125-55. doi: 10.1146/annurev-arplant-042809-112242. Review.

PMID:
20192740
35.

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

Alverson AJ, Wei X, Rice DW, Stern DB, Barry K, Palmer JD.

Mol Biol Evol. 2010 Jun;27(6):1436-48. doi: 10.1093/molbev/msq029. Epub 2010 Jan 29.

36.

MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.

Johnson X, Wostrikoff K, Finazzi G, Kuras R, Schwarz C, Bujaldon S, Nickelsen J, Stern DB, Wollman FA, Vallon O.

Plant Cell. 2010 Jan;22(1):234-48. doi: 10.1105/tpc.109.066266. Epub 2010 Jan 22.

37.

Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids.

Sattarzadeh A, Fuller J, Moguel S, Wostrikoff K, Sato S, Covshoff S, Clemente T, Hanson M, Stern DB.

Plant Biotechnol J. 2010 Feb;8(2):112-25. doi: 10.1111/j.1467-7652.2009.00463.x. Epub 2009 Dec 28.

38.

Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis.

Marchive C, Yehudai-Resheff S, Germain A, Fei Z, Jiang X, Judkins J, Wu H, Fernie AR, Fait A, Stern DB.

Plant Physiol. 2009 Oct;151(2):905-24. doi: 10.1104/pp.109.145144. Epub 2009 Aug 26.

39.

Partners in thought: a clinical process theory of narrative.

Stern DB.

Psychoanal Q. 2009 Jul;78(3):701-31.

PMID:
19685811
40.

Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.

Zimmer SL, Schein A, Zipor G, Stern DB, Schuster G.

Plant J. 2009 Jul;59(1):88-99. doi: 10.1111/j.1365-313X.2009.03853.x. Epub 2009 Feb 26.

41.

The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.

Bollenbach TJ, Sharwood RE, Gutierrez R, Lerbs-Mache S, Stern DB.

Plant Mol Biol. 2009 Mar;69(5):541-52. doi: 10.1007/s11103-008-9436-z. Epub 2008 Dec 9.

PMID:
19067181
42.
43.

Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient.

Cahoon AB, Takacs EM, Sharpe RM, Stern DB.

Plant Mol Biol. 2008 Jan;66(1-2):33-46. Epub 2007 Oct 12.

PMID:
17932771
44.

Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii.

Yehudai-Resheff S, Zimmer SL, Komine Y, Stern DB.

Plant Cell. 2007 Mar;19(3):1023-38. Epub 2007 Mar 9.

45.
46.
48.

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach.

Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW.

BMC Evol Biol. 2006 Feb 9;6:13.

49.

Chlamydomonas reinhardtii encodes a single sigma70-like factor which likely functions in chloroplast transcription.

Bohne AV, Irihimovitch V, Weihe A, Stern DB.

Curr Genet. 2006 May;49(5):333-40. Epub 2006 Feb 2.

PMID:
16453112
50.

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