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Items: 1 to 50 of 70

1.

methyl-ATAC-seq measures DNA methylation at accessible chromatin.

Spektor R, Tippens ND, Mimoso CA, Soloway PD.

Genome Res. 2019 Jun;29(6):969-977. doi: 10.1101/gr.245399.118. Epub 2019 Jun 3.

PMID:
31160376
2.

Imprinted DNA methylation reconstituted at a non-imprinted locus.

Taylor DH, McLean CM, Wu WL, Wang AB, Soloway PD.

Epigenetics Chromatin. 2016 Sep 22;9:41. doi: 10.1186/s13072-016-0094-0. eCollection 2016.

3.

Analysis of Combinatorial Epigenomic States.

Soloway PD.

ACS Chem Biol. 2016 Mar 18;11(3):621-31. doi: 10.1021/acschembio.5b00833. Review.

PMID:
26555135
4.

Long non-coding RNA regulation of reproduction and development.

Taylor DH, Chu ET, Spektor R, Soloway PD.

Mol Reprod Dev. 2015 Dec;82(12):932-56. doi: 10.1002/mrd.22581. Epub 2015 Oct 30. Review.

5.

Role of PRDM16 and its PR domain in the epigenetic regulation of myogenic and adipogenic genes during transdifferentiation of C2C12 cells.

Li X, Wang J, Jiang Z, Guo F, Soloway PD, Zhao R.

Gene. 2015 Oct 10;570(2):191-8. doi: 10.1016/j.gene.2015.06.017. Epub 2015 Jun 10.

PMID:
26071185
6.

Single molecule and single cell epigenomics.

Hyun BR, McElwee JL, Soloway PD.

Methods. 2015 Jan 15;72:41-50. doi: 10.1016/j.ymeth.2014.08.015. Epub 2014 Sep 7. Review.

7.

Epigenomics: one molecule at a time.

Hagarman JA, Soloway PD.

Cell Cycle. 2013 Nov 15;12(22):3451-2. doi: 10.4161/cc.26694. Epub 2013 Oct 8. No abstract available.

8.

Possible chemical initiators of cognitive dysfunction in phenylketonuria, Parkinson's disease and Alzheimer's disease.

Soloway AH, Soloway PD, Warner VD.

Med Hypotheses. 2013 Oct;81(4):690-4. doi: 10.1016/j.mehy.2013.07.028. Epub 2013 Aug 12.

PMID:
23942032
9.

Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells.

Murphy PJ, Cipriany BR, Wallin CB, Ju CY, Szeto K, Hagarman JA, Benitez JJ, Craighead HG, Soloway PD.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7772-7. doi: 10.1073/pnas.1218495110. Epub 2013 Apr 22.

10.

Coordinate regulation of DNA methylation and H3K27me3 in mouse embryonic stem cells.

Hagarman JA, Motley MP, Kristjansdottir K, Soloway PD.

PLoS One. 2013;8(1):e53880. doi: 10.1371/journal.pone.0053880. Epub 2013 Jan 11.

11.

Microfluidic extraction, stretching and analysis of human chromosomal DNA from single cells.

Benítez JJ, Topolancik J, Tian HC, Wallin CB, Latulippe DR, Szeto K, Murphy PJ, Cipriany BR, Levy SL, Soloway PD, Craighead HG.

Lab Chip. 2012 Nov 21;12(22):4848-54. doi: 10.1039/c2lc40955k.

12.

Breed-dependent transcriptional regulation of 5'-untranslated GR (NR3C1) exon 1 mRNA variants in the liver of newborn piglets.

Zou H, Li R, Jia Y, Yang X, Ni Y, Cong R, Soloway PD, Zhao R.

PLoS One. 2012;7(7):e40432. doi: 10.1371/journal.pone.0040432. Epub 2012 Jul 5.

13.

Real-time analysis and selection of methylated DNA by fluorescence-activated single molecule sorting in a nanofluidic channel.

Cipriany BR, Murphy PJ, Hagarman JA, Cerf A, Latulippe D, Levy SL, Benítez JJ, Tan CP, Topolancik J, Soloway PD, Craighead HG.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):8477-82. doi: 10.1073/pnas.1117549109. Epub 2012 May 14.

14.

Sequences sufficient for programming imprinted germline DNA methylation defined.

Park YJ, Herman H, Gao Y, Lindroth AM, Hu BY, Murphy PJ, Putnam JR, Soloway PD.

PLoS One. 2012;7(3):e33024. doi: 10.1371/journal.pone.0033024. Epub 2012 Mar 5.

15.

Methylation on the mind.

Flax JD, Soloway PD.

Nat Neurosci. 2011 Nov 23;14(12):1494-6. doi: 10.1038/nn.2988. No abstract available.

PMID:
22119946
16.

A survey for novel imprinted genes in the mouse placenta by mRNA-seq.

Wang X, Soloway PD, Clark AG.

Genetics. 2011 Sep;189(1):109-22. doi: 10.1534/genetics.111.130088. Epub 2011 Jul 29.

17.

Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K, Soloway PD, Sasaki H.

Science. 2011 May 13;332(6031):848-52. doi: 10.1126/science.1203919.

18.

Imprinted Rasgrf1 expression in neonatal mice affects olfactory learning and memory.

Drake NM, DeVito LM, Cleland TA, Soloway PD.

Genes Brain Behav. 2011 Jun;10(4):392-403. doi: 10.1111/j.1601-183X.2011.00678.x. Epub 2011 Feb 10.

19.

A non-coding RNA within the Rasgrf1 locus in mouse is imprinted and regulated by its homologous chromosome in trans.

Brideau CM, Kauppinen KP, Holmes R, Soloway PD.

PLoS One. 2010 Nov 2;5(11):e13784. doi: 10.1371/journal.pone.0013784.

20.

Paternally biased X inactivation in mouse neonatal brain.

Wang X, Soloway PD, Clark AG.

Genome Biol. 2010;11(7):R79. doi: 10.1186/gb-2010-11-7-r79. Epub 2010 Jul 27.

21.

Successful computational prediction of novel imprinted genes from epigenomic features.

Brideau CM, Eilertson KE, Hagarman JA, Bustamante CD, Soloway PD.

Mol Cell Biol. 2010 Jul;30(13):3357-70. doi: 10.1128/MCB.01355-09. Epub 2010 Apr 26.

22.

Single molecule epigenetic analysis in a nanofluidic channel.

Cipriany BR, Zhao R, Murphy PJ, Levy SL, Tan CP, Craighead HG, Soloway PD.

Anal Chem. 2010 Mar 15;82(6):2480-7. doi: 10.1021/ac9028642.

23.

TIMP2 deficiency accelerates adverse post-myocardial infarction remodeling because of enhanced MT1-MMP activity despite lack of MMP2 activation.

Kandalam V, Basu R, Abraham T, Wang X, Soloway PD, Jaworski DM, Oudit GY, Kassiri Z.

Circ Res. 2010 Mar 5;106(4):796-808. doi: 10.1161/CIRCRESAHA.109.209189. Epub 2010 Jan 7.

PMID:
20056917
24.

Imprint switch mutations at Rasgrf1 support conflict hypothesis of imprinting and define a growth control mechanism upstream of IGF1.

Drake NM, Park YJ, Shirali AS, Cleland TA, Soloway PD.

Mamm Genome. 2009 Sep-Oct;20(9-10):654-63. doi: 10.1007/s00335-009-9192-7. Epub 2009 Jun 10.

25.

Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain.

Wang X, Sun Q, McGrath SD, Mardis ER, Soloway PD, Clark AG.

PLoS One. 2008;3(12):e3839. doi: 10.1371/journal.pone.0003839. Epub 2008 Dec 4.

26.

Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus.

Lindroth AM, Park YJ, McLean CM, Dokshin GA, Persson JM, Herman H, Pasini D, Miró X, Donohoe ME, Lee JT, Helin K, Soloway PD.

PLoS Genet. 2008 Aug 1;4(8):e1000145. doi: 10.1371/journal.pgen.1000145.

27.

Tissue inhibitor of metalloproteinase-2 (TIMP-2) regulates myogenesis and beta1 integrin expression in vitro.

Lluri G, Langlois GD, Soloway PD, Jaworski DM.

Exp Cell Res. 2008 Jan 1;314(1):11-24. Epub 2007 Jun 27.

28.
29.

Persistent macrophage/microglial activation and myelin disruption after experimental autoimmune encephalomyelitis in tissue inhibitor of metalloproteinase-1-deficient mice.

Crocker SJ, Whitmire JK, Frausto RF, Chertboonmuang P, Soloway PD, Whitton JL, Campbell IL.

Am J Pathol. 2006 Dec;169(6):2104-16.

30.

Timing and sequence requirements defined for embryonic maintenance of imprinted DNA methylation at Rasgrf1.

Holmes R, Chang Y, Soloway PD.

Mol Cell Biol. 2006 Dec;26(24):9564-70. Epub 2006 Oct 9.

31.

Tissue inhibitor of metalloproteinase-2 (TIMP-2) regulates neuromuscular junction development via a beta1 integrin-mediated mechanism.

Lluri G, Langlois GD, McClellan B, Soloway PD, Jaworski DM.

J Neurobiol. 2006 Oct;66(12):1365-77.

32.

Involvement of tissue inhibition of metalloproteinases-1 in learning and memory in mice.

Chaillan FA, Rivera S, Marchetti E, Jourquin J, Werb Z, Soloway PD, Khrestchatisky M, Roman FS.

Behav Brain Res. 2006 Oct 16;173(2):191-8. Epub 2006 Jul 24.

33.

Gene nutrient interactions and evolution.

Soloway PD.

Nutr Rev. 2006 May;64(5 Pt 2):S52-4; discussion S72-91. Review.

PMID:
16770954
34.

Genetics: paramutable possibilities.

Soloway PD.

Nature. 2006 May 25;441(7092):413-4. No abstract available.

PMID:
16724044
35.

Regulation of imprinted DNA methylation.

Holmes R, Soloway PD.

Cytogenet Genome Res. 2006;113(1-4):122-9. Review.

PMID:
16575171
36.

Individual Timp deficiencies differentially impact pro-MMP-2 activation.

English JL, Kassiri Z, Koskivirta I, Atkinson SJ, Di Grappa M, Soloway PD, Nagase H, Vuorio E, Murphy G, Khokha R.

J Biol Chem. 2006 Apr 14;281(15):10337-46. Epub 2006 Feb 9.

37.

Astrocyte reactivity to Fas activation is attenuated in TIMP-1 deficient mice, an in vitro study.

Ogier C, Creidy R, Boucraut J, Soloway PD, Khrestchatisky M, Rivera S.

BMC Neurosci. 2005 Nov 29;6:68.

38.

Rasgrf1 imprinting is regulated by a CTCF-dependent methylation-sensitive enhancer blocker.

Yoon B, Herman H, Hu B, Park YJ, Lindroth A, Bell A, West AG, Chang Y, Stablewski A, Piel JC, Loukinov DI, Lobanenkov VV, Soloway PD.

Mol Cell Biol. 2005 Dec;25(24):11184-90.

39.

Tissue inhibitor of metalloproteinases-1 (TIMP-1) modulates neuronal death, axonal plasticity, and learning and memory.

Jourquin J, Tremblay E, Bernard A, Charton G, Chaillan FA, Marchetti E, Roman FS, Soloway PD, Dive V, Yiotakis A, Khrestchatisky M, Rivera S.

Eur J Neurosci. 2005 Nov;22(10):2569-78.

PMID:
16307599
40.

Tissue inhibitor of metalloproteinase-1 deficiency amplifies acute lung injury in bleomycin-exposed mice.

Kim KH, Burkhart K, Chen P, Frevert CW, Randolph-Habecker J, Hackman RC, Soloway PD, Madtes DK.

Am J Respir Cell Mol Biol. 2005 Sep;33(3):271-9. Epub 2005 Jun 9.

41.

Metalloproteinase inhibitor TIMP-1 affects hepatocyte cell cycle via HGF activation in murine liver regeneration.

Mohammed FF, Pennington CJ, Kassiri Z, Rubin JS, Soloway PD, Ruther U, Edwards DR, Khokha R.

Hepatology. 2005 Apr;41(4):857-67.

PMID:
15726641
42.

Tissue inhibitor of metalloproteinase 1 regulates resistance to infection.

Lee MM, Yoon BJ, Osiewicz K, Preston M, Bundy B, van Heeckeren AM, Werb Z, Soloway PD.

Infect Immun. 2005 Jan;73(1):661-5.

43.

Differential inhibition of membrane type 3 (MT3)-matrix metalloproteinase (MMP) and MT1-MMP by tissue inhibitor of metalloproteinase (TIMP)-2 and TIMP-3 rgulates pro-MMP-2 activation.

Zhao H, Bernardo MM, Osenkowski P, Sohail A, Pei D, Nagase H, Kashiwagi M, Soloway PD, DeClerck YA, Fridman R.

J Biol Chem. 2004 Mar 5;279(10):8592-601. Epub 2003 Dec 16.

44.

Trans allele methylation and paramutation-like effects in mice.

Herman H, Lu M, Anggraini M, Sikora A, Chang Y, Yoon BJ, Soloway PD.

Nat Genet. 2003 Jun;34(2):199-202.

45.

Biologic contribution of P1 promoter-mediated expression of ST6Gal I sialyltransferase.

Appenheimer MM, Huang RY, Chandrasekaran EV, Dalziel M, Hu YP, Soloway PD, Wuensch SA, Matta KL, Lau JT.

Glycobiology. 2003 Aug;13(8):591-600. Epub 2003 Apr 2.

PMID:
12672700
46.
47.

Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1.

Fitzpatrick GV, Soloway PD, Higgins MJ.

Nat Genet. 2002 Nov;32(3):426-31. Epub 2002 Sep 9.

PMID:
12410230
48.

DNA methylation, imprinting and cancer.

Plass C, Soloway PD.

Eur J Hum Genet. 2002 Jan;10(1):6-16. Review.

49.

Regulation of DNA methylation of Rasgrf1.

Yoon BJ, Herman H, Sikora A, Smith LT, Plass C, Soloway PD.

Nat Genet. 2002 Jan;30(1):92-6. Epub 2001 Dec 20.

50.

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