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Best matches for Söderberg O[au]:

Crosstalk between Hippo and TGFβ: Subcellular Localization of YAP/TAZ/Smad Complexes. Grannas K et al. J Mol Biol. (2015)

Let There Be Light! Raykova D et al. Proteomes. (2016)

Direct observation of individual endogenous protein complexes in situ by proximity ligation. Söderberg O et al. Nat Methods. (2006)

Search results

Items: 1 to 50 of 114

1.

Dynamin inhibitors impair platelet-derived growth factor β-receptor dimerization and signaling.

Heldin J, Sander MR, Leino M, Thomsson S, Lennartsson J, Söderberg O.

Exp Cell Res. 2019 Jul 1;380(1):69-79. doi: 10.1016/j.yexcr.2019.04.004. Epub 2019 Apr 7.

2.

In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation.

Wu CC, Klaesson A, Buskas J, Ranefall P, Mirzazadeh R, Söderberg O, Wolf JBW.

J Exp Biol. 2019 Mar 8;222(Pt 5). pii: jeb194431. doi: 10.1242/jeb.194431.

3.

Correction: WRAP53 Is Essential for Cajal Body Formation and for Targeting the Survival of Motor Neuron Complex to Cajal Bodies.

Mahmoudi S, Henriksson S, Weibrecht I, Smith S, Söderberg O, Strömblad S, Wiman KG, Farnebo M.

PLoS Biol. 2018 Sep 25;16(9):e3000030. doi: 10.1371/journal.pbio.3000030. eCollection 2018 Sep.

4.

Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes.

Klaesson A, Grannas K, Ebai T, Heldin J, Koos B, Leino M, Raykova D, Oelrich J, Arngården L, Söderberg O, Landegren U.

Sci Rep. 2018 Mar 29;8(1):5400. doi: 10.1038/s41598-018-23582-1.

5.

Corrigendum: Insufficient antibody validation challenges oestrogen receptor beta research.

Andersson S, Sundberg M, Pristovsek N, Ibrahim A, Jonsson P, Katona B, Clausson CM, Zieba A, Ramström M, Söderberg O, Williams C, Asplund A.

Nat Commun. 2017 Nov 29;8:16164. doi: 10.1038/ncomms16164.

6.

Detection of Extracellular Vesicles Using Proximity Ligation Assay with Flow Cytometry Readout-ExoPLA.

Löf L, Arngården L, Ebai T, Landegren U, Söderberg O, Kamali-Moghaddam M.

Curr Protoc Cytom. 2017 Jul 5;81:4.8.1-4.8.10. doi: 10.1002/cpcy.22.

PMID:
28678418
7.

Insufficient antibody validation challenges oestrogen receptor beta research.

Andersson S, Sundberg M, Pristovsek N, Ibrahim A, Jonsson P, Katona B, Clausson CM, Zieba A, Ramström M, Söderberg O, Williams C, Asplund A.

Nat Commun. 2017 Jun 15;8:15840. doi: 10.1038/ncomms15840. Erratum in: Nat Commun. 2017 Nov 29;8:16164.

8.

Flow Cytometric Measurement of Blood Cells with BCR-ABL1 Fusion Protein in Chronic Myeloid Leukemia.

Löf L, Arngården L, Olsson-Strömberg U, Siart B, Jansson M, Dahlin JS, Thörn I, Christiansson L, Hermansson M, Larsson A, Ahlstrand E, Wålinder G, Söderberg O, Rosenquist R, Landegren U, Kamali-Moghaddam M.

Sci Rep. 2017 Apr 4;7(1):623. doi: 10.1038/s41598-017-00755-y.

9.

Let There Be Light!

Raykova D, Koos B, Asplund A, Gelléri M, Ivarsson Y, Danielson UH, Söderberg O.

Proteomes. 2016 Nov 29;4(4). pii: E36. doi: 10.3390/proteomes4040036. Review.

10.

Detecting individual extracellular vesicles using a multicolor in situ proximity ligation assay with flow cytometric readout.

Löf L, Ebai T, Dubois L, Wik L, Ronquist KG, Nolander O, Lundin E, Söderberg O, Landegren U, Kamali-Moghaddam M.

Sci Rep. 2016 Sep 29;6:34358. doi: 10.1038/srep34358.

11.

In Situ Proximity Ligation Assay (In Situ PLA) to Assess PTP-Protein Interactions.

Koch S, Helbing I, Böhmer SA, Hayashi M, Claesson-Welsh L, Söderberg O, Böhmer FD.

Methods Mol Biol. 2016;1447:217-42. doi: 10.1007/978-1-4939-3746-2_13.

PMID:
27514809
12.

Designing and Applying Proximity-Dependent Hybridization Chain Reaction.

Koos B, Söderberg O.

Curr Protoc Protein Sci. 2016 Aug 1;85:19.28.1-19.28.13. doi: 10.1002/cpps.9.

PMID:
27479504
13.

Antagonists of IGF:Vitronectin Interactions Inhibit IGF-I-Induced Breast Cancer Cell Functions.

Kashyap AS, Shooter GK, Shokoohmand A, McGovern J, Sivaramakrishnan M, Croll TI, Cane G, Leavesley DI, Söderberg O, Upton Z, Hollier BG.

Mol Cancer Ther. 2016 Jul;15(7):1602-13. doi: 10.1158/1535-7163.MCT-15-0907. Epub 2016 May 9. Erratum in: Mol Cancer Ther. 2016 Dec;15(12 ):3120.

14.

Single Chain Antibodies as Tools to Study transforming growth factor-β-Regulated SMAD Proteins in Proximity Ligation-Based Pharmacological Screens.

Blokzijl A, Zieba A, Hust M, Schirrmann T, Helmsing S, Grannas K, Hertz E, Moren A, Chen L, Söderberg O, Moustakas A, Dübel S, Landegren U.

Mol Cell Proteomics. 2016 Jun;15(6):1848-56. doi: 10.1074/mcp.M115.055756. Epub 2016 Feb 29.

15.

The protein kinase LKB1 negatively regulates bone morphogenetic protein receptor signaling.

Raja E, Tzavlaki K, Vuilleumier R, Edlund K, Kahata K, Zieba A, Morén A, Watanabe Y, Voytyuk I, Botling J, Söderberg O, Micke P, Pyrowolakis G, Heldin CH, Moustakas A.

Oncotarget. 2016 Jan 12;7(2):1120-43. doi: 10.18632/oncotarget.6683.

16.

Closing in on life: proximity dependent methods for life sciences.

Koos B, Söderberg O.

Oncotarget. 2015 Jul 20;6(20):17867-8. No abstract available.

17.

E-cadherin can limit the transforming properties of activating β-catenin mutations.

Huels DJ, Ridgway RA, Radulescu S, Leushacke M, Campbell AD, Biswas S, Leedham S, Serra S, Chetty R, Moreaux G, Parry L, Matthews J, Song F, Hedley A, Kalna G, Ceteci F, Reed KR, Meniel VS, Maguire A, Doyle B, Söderberg O, Barker N, Watson A, Larue L, Clarke AR, Sansom OJ.

EMBO J. 2015 Sep 14;34(18):2321-33. doi: 10.15252/embj.201591739. Epub 2015 Aug 3.

18.

Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio.

Clausson CM, Arngården L, Ishaq O, Klaesson A, Kühnemund M, Grannas K, Koos B, Qian X, Ranefall P, Krzywkowski T, Brismar H, Nilsson M, Wählby C, Söderberg O.

Sci Rep. 2015 Jul 23;5:12317. doi: 10.1038/srep12317.

19.

Proximity-dependent initiation of hybridization chain reaction.

Koos B, Cane G, Grannas K, Löf L, Arngården L, Heldin J, Clausson CM, Klaesson A, Hirvonen MK, de Oliveira FM, Talibov VO, Pham NT, Auer M, Danielson UH, Haybaeck J, Kamali-Moghaddam M, Söderberg O.

Nat Commun. 2015 Jun 12;6:7294. doi: 10.1038/ncomms8294.

20.

Functional loss of IκBε leads to NF-κB deregulation in aggressive chronic lymphocytic leukemia.

Mansouri L, Sutton LA, Ljungström V, Bondza S, Arngården L, Bhoi S, Larsson J, Cortese D, Kalushkova A, Plevova K, Young E, Gunnarsson R, Falk-Sörqvist E, Lönn P, Muggen AF, Yan XJ, Sander B, Enblad G, Smedby KE, Juliusson G, Belessi C, Rung J, Chiorazzi N, Strefford JC, Langerak AW, Pospisilova S, Davi F, Hellström M, Jernberg-Wiklund H, Ghia P, Söderberg O, Stamatopoulos K, Nilsson M, Rosenquist R.

J Exp Med. 2015 Jun 1;212(6):833-43. doi: 10.1084/jem.20142009. Epub 2015 May 18.

21.

Crosstalk between Hippo and TGFβ: Subcellular Localization of YAP/TAZ/Smad Complexes.

Grannas K, Arngården L, Lönn P, Mazurkiewicz M, Blokzijl A, Zieba A, Söderberg O.

J Mol Biol. 2015 Oct 23;427(21):3407-15. doi: 10.1016/j.jmb.2015.04.015. Epub 2015 May 1.

PMID:
25937570
22.

Next-generation pathology--surveillance of tumor microecology.

Koos B, Kamali-Moghaddam M, David L, Sobrinho-Simões M, Dimberg A, Nilsson M, Wählby C, Söderberg O.

J Mol Biol. 2015 Jun 5;427(11):2013-22. doi: 10.1016/j.jmb.2015.02.017. Epub 2015 Feb 26. Review.

23.

Detection of glyco-mucin profiles improves specificity of MUC16 and MUC1 biomarkers in ovarian serous tumours.

Ricardo S, Marcos-Silva L, Pereira D, Pinto R, Almeida R, Söderberg O, Mandel U, Clausen H, Felix A, Lunet N, David L.

Mol Oncol. 2015 Feb;9(2):503-12. doi: 10.1016/j.molonc.2014.10.005. Epub 2014 Oct 22.

24.

Fine-tuning of Smad protein function by poly(ADP-ribose) polymerases and poly(ADP-ribose) glycohydrolase during transforming growth factor β signaling.

Dahl M, Maturi V, Lönn P, Papoutsoglou P, Zieba A, Vanlandewijck M, van der Heide LP, Watanabe Y, Söderberg O, Hottiger MO, Heldin CH, Moustakas A.

PLoS One. 2014 Aug 18;9(8):e103651. doi: 10.1371/journal.pone.0103651. eCollection 2014.

25.

Analysis of protein interactions in situ by proximity ligation assays.

Koos B, Andersson L, Clausson CM, Grannas K, Klaesson A, Cane G, Söderberg O.

Curr Top Microbiol Immunol. 2014;377:111-26. doi: 10.1007/82_2013_334.

PMID:
23921974
26.

Association of the protein-tyrosine phosphatase DEP-1 with its substrate FLT3 visualized by in situ proximity ligation assay.

Böhmer SA, Weibrecht I, Söderberg O, Böhmer FD.

PLoS One. 2013 May 1;8(5):e62871. doi: 10.1371/journal.pone.0062871. Print 2013.

27.

Parallel visualization of multiple protein complexes in individual cells in tumor tissue.

Leuchowius KJ, Clausson CM, Grannas K, Erbilgin Y, Botling J, Zieba A, Landegren U, Söderberg O.

Mol Cell Proteomics. 2013 Jun;12(6):1563-71. doi: 10.1074/mcp.O112.023374. Epub 2013 Feb 22.

28.

In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay.

Weibrecht I, Lundin E, Kiflemariam S, Mignardi M, Grundberg I, Larsson C, Koos B, Nilsson M, Söderberg O.

Nat Protoc. 2013 Feb;8(2):355-72. doi: 10.1038/nprot.2013.006. Epub 2013 Jan 24.

PMID:
23348363
29.

P-cadherin functional role is dependent on E-cadherin cellular context: a proof of concept using the breast cancer model.

Ribeiro AS, Sousa B, Carreto L, Mendes N, Nobre AR, Ricardo S, Albergaria A, Cameselle-Teijeiro JF, Gerhard R, Söderberg O, Seruca R, Santos MA, Schmitt F, Paredes J.

J Pathol. 2013 Apr;229(5):705-18. doi: 10.1002/path.4143. Epub 2013 Jan 24. Erratum in: J Pathol. 2016 May;239(1):122.

PMID:
23180380
30.

Specific interactions between Smad proteins and AP-1 components determine TGFβ-induced breast cancer cell invasion.

Sundqvist A, Zieba A, Vasilaki E, Herrera Hidalgo C, Söderberg O, Koinuma D, Miyazono K, Heldin CH, Landegren U, Ten Dijke P, van Dam H.

Oncogene. 2013 Aug 1;32(31):3606-15. doi: 10.1038/onc.2012.370. Epub 2012 Aug 27.

PMID:
22926518
31.

The importance of E-cadherin binding partners to evaluate the pathogenicity of E-cadherin missense mutations associated to HDGC.

Figueiredo J, Söderberg O, Simões-Correia J, Grannas K, Suriano G, Seruca R.

Eur J Hum Genet. 2013 Mar;21(3):301-9. doi: 10.1038/ejhg.2012.159. Epub 2012 Aug 1.

32.

Transcriptional profiling of human glioblastoma vessels indicates a key role of VEGF-A and TGFβ2 in vascular abnormalization.

Dieterich LC, Mellberg S, Langenkamp E, Zhang L, Zieba A, Salomäki H, Teichert M, Huang H, Edqvist PH, Kraus T, Augustin HG, Olofsson T, Larsson E, Söderberg O, Molema G, Pontén F, Georgii-Hemming P, Alafuzoff I, Dimberg A.

J Pathol. 2012 Nov;228(3):378-90. doi: 10.1002/path.4072. Epub 2012 Aug 31.

PMID:
22786655
33.

Methods for analysis of the cancer microenvironment and their potential for disease prediction, monitoring and personalized treatments.

Clausson CM, Grundberg I, Weibrecht I, Nilsson M, Söderberg O.

EPMA J. 2012 Mar 22;3(1):7. doi: 10.1007/s13167-012-0140-3.

34.

Protein tag-mediated conjugation of oligonucleotides to recombinant affinity binders for proximity ligation.

Gu GJ, Friedman M, Jost C, Johnsson K, Kamali-Moghaddam M, Plückthun A, Landegren U, Söderberg O.

N Biotechnol. 2013 Jan 25;30(2):144-52. doi: 10.1016/j.nbt.2012.05.005. Epub 2012 Jun 2.

PMID:
22664266
35.

Molecular tools for companion diagnostics.

Zieba A, Grannas K, Söderberg O, Gullberg M, Nilsson M, Landegren U.

N Biotechnol. 2012 Sep 15;29(6):634-40. doi: 10.1016/j.nbt.2012.05.004. Epub 2012 May 24. Review.

PMID:
22634023
36.

Intercellular variation in signaling through the TGF-β pathway and its relation to cell density and cell cycle phase.

Zieba A, Pardali K, Söderberg O, Lindbom L, Nyström E, Moustakas A, Heldin CH, Landegren U.

Mol Cell Proteomics. 2012 Jul;11(7):M111.013482. doi: 10.1074/mcp.M111.013482. Epub 2012 Mar 22.

37.

Functional overlap between chondroitin and heparan sulfate proteoglycans during VEGF-induced sprouting angiogenesis.

Le Jan S, Hayashi M, Kasza Z, Eriksson I, Bishop JR, Weibrecht I, Heldin J, Holmborn K, Jakobsson L, Söderberg O, Spillmann D, Esko JD, Claesson-Welsh L, Kjellén L, Kreuger J.

Arterioscler Thromb Vasc Biol. 2012 May;32(5):1255-63. doi: 10.1161/ATVBAHA.111.240622. Epub 2012 Feb 16.

38.

Increasing the dynamic range of in situ PLA.

Clausson CM, Allalou A, Weibrecht I, Mahmoudi S, Farnebo M, Landegren U, Wählby C, Söderberg O.

Nat Methods. 2011 Oct 28;8(11):892-3. doi: 10.1038/nmeth.1743. No abstract available.

PMID:
22036742
39.

Visualising individual sequence-specific protein-DNA interactions in situ.

Weibrecht I, Gavrilovic M, Lindbom L, Landegren U, Wählby C, Söderberg O.

N Biotechnol. 2012 Jun 15;29(5):589-98. doi: 10.1016/j.nbt.2011.08.002. Epub 2011 Aug 31.

PMID:
21906700
40.

Identification of new cancer biomarkers based on aberrant mucin glycoforms by in situ proximity ligation.

Pinto R, Carvalho AS, Conze T, Magalhães A, Picco G, Burchell JM, Taylor-Papadimitriou J, Reis CA, Almeida R, Mandel U, Clausen H, Söderberg O, David L.

J Cell Mol Med. 2012 Jul;16(7):1474-84. doi: 10.1111/j.1582-4934.2011.01436.x.

41.

ADP-ribosylation factor 6 mediates E-cadherin recovery by chemical chaperones.

Figueiredo J, Simões-Correia J, Söderberg O, Suriano G, Seruca R.

PLoS One. 2011;6(8):e23188. doi: 10.1371/journal.pone.0023188. Epub 2011 Aug 10.

42.

Western blotting via proximity ligation for high performance protein analysis.

Liu Y, Gu J, Hagner-McWhirter Å, Sathiyanarayanan P, Gullberg M, Söderberg O, Johansson J, Hammond M, Ivansson D, Landegren U.

Mol Cell Proteomics. 2011 Nov;10(11):O111.011031. doi: 10.1074/mcp.O111.011031. Epub 2011 Aug 2.

43.

Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.

Gavrilovic M, Weibrecht I, Conze T, Söderberg O, Wählby C.

Cytometry A. 2011 Jul;79(7):518-27. doi: 10.1002/cyto.a.21087. Epub 2011 Jun 10.

44.

Simultaneous visualization of both signaling cascade activity and end-point gene expression in single cells.

Weibrecht I, Grundberg I, Nilsson M, Söderberg O.

PLoS One. 2011;6(5):e20148. doi: 10.1371/journal.pone.0020148. Epub 2011 May 25.

45.

In situ proximity ligation assay for microscopy and flow cytometry.

Leuchowius KJ, Weibrecht I, Söderberg O.

Curr Protoc Cytom. 2011 Apr;Chapter 9:Unit 9.36. doi: 10.1002/0471142956.cy0936s56.

PMID:
21455970
46.

WRAP53 is essential for Cajal body formation and for targeting the survival of motor neuron complex to Cajal bodies.

Mahmoudi S, Henriksson S, Weibrecht I, Smith S, Söderberg O, Strömblad S, Wiman KG, Farnebo M.

PLoS Biol. 2010 Nov 2;8(11):e1000521. doi: 10.1371/journal.pbio.1000521. Erratum in: PLoS Biol. 2018 Sep 25;16(9):e3000030.

47.

Analysis of genes, transcripts, and proteins via DNA ligation.

Conze T, Shetye A, Tanaka Y, Gu J, Larsson C, Göransson J, Tavoosidana G, Söderberg O, Nilsson M, Landegren U.

Annu Rev Anal Chem (Palo Alto Calif). 2009;2:215-39. doi: 10.1146/annurev-anchem-060908-155239. Review.

PMID:
20636060
48.

Prognostic but not predictive role of platelet-derived growth factor receptors in patients with recurrent glioblastoma.

Paulsson J, Lindh MB, Jarvius M, Puputti M, Nistér M, Nupponen NN, Paulus W, Söderberg O, Dresemann G, von Deimling A, Joensuu H, Ostman A, Hasselblatt M.

Int J Cancer. 2011 Apr 15;128(8):1981-8. doi: 10.1002/ijc.25528.

49.

Proximity ligation assays: a recent addition to the proteomics toolbox.

Weibrecht I, Leuchowius KJ, Clausson CM, Conze T, Jarvius M, Howell WM, Kamali-Moghaddam M, Söderberg O.

Expert Rev Proteomics. 2010 Jun;7(3):401-9. doi: 10.1586/epr.10.10. Review.

PMID:
20536310
50.

In situ detection and genotyping of individual mRNA molecules.

Larsson C, Grundberg I, Söderberg O, Nilsson M.

Nat Methods. 2010 May;7(5):395-7. doi: 10.1038/nmeth.1448. Epub 2010 Apr 11.

PMID:
20383134

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