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Items: 24

1.

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data.

Hicks AL, Wheeler N, Sánchez-Busó L, Rakeman JL, Harris SR, Grad YH.

PLoS Comput Biol. 2019 Sep 3;15(9):e1007349. doi: 10.1371/journal.pcbi.1007349. eCollection 2019 Sep.

2.

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex.

Chiner-Oms Á, Sánchez-Busó L, Corander J, Gagneux S, Harris SR, Young D, González-Candelas F, Comas I.

Sci Adv. 2019 Jun 12;5(6):eaaw3307. doi: 10.1126/sciadv.aaw3307. eCollection 2019 Jun.

3.

Genome-wide epistasis and co-selection study using mutual information.

Pensar J, Puranen S, Arnold B, MacAlasdair N, Kuronen J, Tonkin-Hill G, Pesonen M, Xu Y, Sipola A, Sánchez-Busó L, Lees JA, Chewapreecha C, Bentley SD, Harris SR, Parkhill J, Croucher NJ, Corander J.

Nucleic Acids Res. 2019 Jul 30. pii: gkz656. doi: 10.1093/nar/gkz656. [Epub ahead of print]

PMID:
31361894
4.

The impact of antimicrobials on gonococcal evolution.

Sánchez-Busó L, Golparian D, Corander J, Grad YH, Ohnishi M, Flemming R, Parkhill J, Bentley SD, Unemo M, Harris SR.

Nat Microbiol. 2019 Jul 29. doi: 10.1038/s41564-019-0501-y. [Epub ahead of print]

PMID:
31358980
5.

Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana.

Otchere ID, van Tonder AJ, Asante-Poku A, Sánchez-Busó L, Coscollá M, Osei-Wusu S, Asare P, Aboagye SY, Ekuban SA, Yahayah AI, Forson A, Baddoo A, Laryea C, Parkhill J, Harris SR, Gagneux S, Yeboah-Manu D.

PLoS One. 2019 Mar 4;14(3):e0209395. doi: 10.1371/journal.pone.0209395. eCollection 2019.

6.

Using genomics to understand antimicrobial resistance and transmission in Neisseria gonorrhoeae.

Sánchez-Busó L, Harris SR.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000239. Epub 2019 Jan 30. Review.

7.

Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer.

Golparian D, Donà V, Sánchez-Busó L, Foerster S, Harris S, Endimiani A, Low N, Unemo M.

Sci Rep. 2018 Dec 4;8(1):17596. doi: 10.1038/s41598-018-35750-4.

8.

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches.

Otchere ID, Coscollá M, Sánchez-Busó L, Asante-Poku A, Brites D, Loiseau C, Meehan C, Osei-Wusu S, Forson A, Laryea C, Yahayah AI, Baddoo A, Ansa GA, Aboagye SY, Asare P, Borrell S, Gehre F, Beckert P, Kohl TA, N'dira S, Beisel C, Antonio M, Niemann S, de Jong BC, Parkhill J, Harris SR, Gagneux S, Yeboah-Manu D.

Sci Rep. 2018 Jul 26;8(1):11269. doi: 10.1038/s41598-018-29620-2.

9.

Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.

Harris SR, Cole MJ, Spiteri G, Sánchez-Busó L, Golparian D, Jacobsson S, Goater R, Abudahab K, Yeats CA, Bercot B, Borrego MJ, Crowley B, Stefanelli P, Tripodo F, Abad R, Aanensen DM, Unemo M; Euro-GASP study group.

Lancet Infect Dis. 2018 Jul;18(7):758-768. doi: 10.1016/S1473-3099(18)30225-1. Epub 2018 May 15.

10.

Correction: Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila.

David S, Sánchez-Busó L, Harris SR, Marttinen P, Rusniok C, Buchrieser C, Harrison TG, Parkhill J.

PLoS Genet. 2017 Dec 1;13(12):e1007116. doi: 10.1371/journal.pgen.1007116. eCollection 2017 Dec.

11.

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads.

Hunt M, Mather AE, Sánchez-Busó L, Page AJ, Parkhill J, Keane JA, Harris SR.

Microb Genom. 2017 Sep 4;3(10):e000131. doi: 10.1099/mgen.0.000131. eCollection 2017 Oct.

12.

Genomic epidemiology of a national outbreak of post-surgical Mycobacterium abscessus wound infections in Brazil.

Everall I, Nogueira CL, Bryant JM, Sánchez-Busó L, Chimara E, Duarte RDS, Ramos JP, Lima KVB, Lopes ML, Palaci M, Kipnis A, Monego F, Floto RA, Parkhill J, Leão SC, Harris SR.

Microb Genom. 2017 May 3;3(5):e000111. doi: 10.1099/mgen.0.000111. eCollection 2017 May.

13.

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila.

David S, Sánchez-Busó L, Harris SR, Marttinen P, Rusniok C, Buchrieser C, Harrison TG, Parkhill J.

PLoS Genet. 2017 Jun 26;13(6):e1006855. doi: 10.1371/journal.pgen.1006855. eCollection 2017 Jun. Erratum in: PLoS Genet. 2017 Dec 1;13(12 ):e1007116.

14.

Bringing Treponema into the spotlight.

Everall I, Sánchez-Busó L.

Nat Rev Microbiol. 2017 Mar 13;15(4):196. doi: 10.1038/nrmicro.2017.23. No abstract available.

PMID:
28286342
15.

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.

Arora N, Schuenemann VJ, Jäger G, Peltzer A, Seitz A, Herbig A, Strouhal M, Grillová L, Sánchez-Busó L, Kühnert D, Bos KI, Davis LR, Mikalová L, Bruisten S, Komericki P, French P, Grant PR, Pando MA, Vaulet LG, Fermepin MR, Martinez A, Centurion Lara A, Giacani L, Norris SJ, Šmajs D, Bosshard PP, González-Candelas F, Nieselt K, Krause J, Bagheri HC.

Nat Microbiol. 2016 Dec 5;2:16245. doi: 10.1038/nmicrobiol.2016.245.

16.

Linking an unchained malady.

Sánchez-Busó L, Harris SR.

Nat Rev Microbiol. 2016 Sep 13;14(10):608. doi: 10.1038/nrmicro.2016.137. No abstract available.

PMID:
27620944
17.

The novel 2016 WHO Neisseria gonorrhoeae reference strains for global quality assurance of laboratory investigations: phenotypic, genetic and reference genome characterization.

Unemo M, Golparian D, Sánchez-Busó L, Grad Y, Jacobsson S, Ohnishi M, Lahra MM, Limnios A, Sikora AE, Wi T, Harris SR.

J Antimicrob Chemother. 2016 Nov;71(11):3096-3108. Epub 2016 Jul 17.

18.

Genomic Investigation of a Legionellosis Outbreak in a Persistently Colonized Hotel.

Sánchez-Busó L, Guiral S, Crespi S, Moya V, Camaró ML, Olmos MP, Adrián F, Morera V, González-Morán F, Vanaclocha H, González-Candelas F.

Front Microbiol. 2016 Jan 21;6:1556. doi: 10.3389/fmicb.2015.01556. eCollection 2015.

19.

Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013.

Sánchez-Busó L, Coscollà M, Palero F, Camaró ML, Gimeno A, Moreno P, Escribano I, López Perezagua MM, Colomina J, Vanaclocha H, González-Candelas F.

Appl Environ Microbiol. 2015 Oct;81(20):7106-13. doi: 10.1128/AEM.02196-15. Epub 2015 Jul 31.

20.

Phylogenetic analysis of environmental Legionella pneumophila isolates from an endemic area (Alcoy, Spain).

Sánchez-Busó L, Olmos MP, Camaró ML, Adrián F, Calafat JM, González-Candelas F.

Infect Genet Evol. 2015 Mar;30:45-54. doi: 10.1016/j.meegid.2014.12.008. Epub 2014 Dec 13.

PMID:
25511251
21.

[Molecular epidemiology studies on the immigrant population in Spain].

González-Candelas F, Alma Bracho M, Comas I, d'Auria G, D Unková M, García R, Gosalbes MJ, Isaac S, Latorre A, López-Labrador FX, Patiño Galindo JÁ, Palero F, Pérez-Brocal V, Pérez-Cobas AE, Sánchez-Busó L, Silva FJ, Vázquez-Castellanos JF, Moya A.

Rev Esp Salud Publica. 2014 Nov-Dec;88(6):819-28. doi: 10.4321/S1135-57272014000600013. Review. Spanish.

22.

Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates.

Sánchez-Busó L, Comas I, Jorques G, González-Candelas F.

Nat Genet. 2014 Nov;46(11):1205-11. doi: 10.1038/ng.3114. Epub 2014 Oct 5.

PMID:
25282102
23.

Mixed infection by Legionella pneumophila in outbreak patients.

Coscollá M, Fernández C, Colomina J, Sánchez-Busó L, González-Candelas F.

Int J Med Microbiol. 2014 May;304(3-4):307-13. doi: 10.1016/j.ijmm.2013.11.002. Epub 2013 Nov 14.

PMID:
24309206
24.

Genetic Characterization of Legionella pneumophila Isolated from a Common Watershed in Comunidad Valenciana, Spain.

Sánchez-Busó L, Coscollá M, Pinto-Carbó M, Catalán V, González-Candelas F.

PLoS One. 2013 Apr 25;8(4):e61564. doi: 10.1371/journal.pone.0061564. Print 2013.

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