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Burkholderia cepacia Complex Species Differ in the Frequency of Variation of the Lipopolysaccharide O-Antigen Expression During Cystic Fibrosis Chronic Respiratory Infection.

Hassan AA, Coutinho CP, Sá-Correia I.

Front Cell Infect Microbiol. 2019 Jul 31;9:273. doi: 10.3389/fcimb.2019.00273. eCollection 2019.


Physiological Genomics of the Highly Weak-Acid-Tolerant Food Spoilage Yeasts of Zygosaccharomyces bailii sensu lato.

Palma M, Sá-Correia I.

Prog Mol Subcell Biol. 2019;58:85-109. doi: 10.1007/978-3-030-13035-0_4. Review.


Physiological Genomics of Multistress Resistance in the Yeast Cell Model and Factory: Focus on MDR/MXR Transporters.

Godinho CP, Sá-Correia I.

Prog Mol Subcell Biol. 2019;58:1-35. doi: 10.1007/978-3-030-13035-0_1. Review.


Molecular and physiological basis of Saccharomyces cerevisiae tolerance to adverse lignocellulose-based process conditions.

Cunha JT, Romaní A, Costa CE, Sá-Correia I, Domingues L.

Appl Microbiol Biotechnol. 2019 Jan;103(1):159-175. doi: 10.1007/s00253-018-9478-3. Epub 2018 Nov 5. Review.


The Paralogous Genes PDR18 and SNQ2, Encoding Multidrug Resistance ABC Transporters, Derive From a Recent Duplication Event, PDR18 Being Specific to the Saccharomyces Genus.

Godinho CP, Dias PJ, Ponçot E, Sá-Correia I.

Front Genet. 2018 Oct 15;9:476. doi: 10.3389/fgene.2018.00476. eCollection 2018.


Transcriptional profiling of Zygosaccharomyces bailii early response to acetic acid or copper stress mediated by ZbHaa1.

Antunes M, Palma M, Sá-Correia I.

Sci Rep. 2018 Sep 20;8(1):14122. doi: 10.1038/s41598-018-32266-9.


Pdr18 is involved in yeast response to acetic acid stress counteracting the decrease of plasma membrane ergosterol content and order.

Godinho CP, Prata CS, Pinto SN, Cardoso C, Bandarra NM, Fernandes F, Sá-Correia I.

Sci Rep. 2018 May 18;8(1):7860. doi: 10.1038/s41598-018-26128-7.


HAA1 and PRS3 overexpression boosts yeast tolerance towards acetic acid improving xylose or glucose consumption: unravelling the underlying mechanisms.

Cunha JT, Costa CE, Ferraz L, Romaní A, Johansson B, Sá-Correia I, Domingues L.

Appl Microbiol Biotechnol. 2018 May;102(10):4589-4600. doi: 10.1007/s00253-018-8955-z. Epub 2018 Apr 2.


Adaptive Response and Tolerance to Acetic Acid in Saccharomyces cerevisiae and Zygosaccharomyces bailii: A Physiological Genomics Perspective.

Palma M, Guerreiro JF, Sá-Correia I.

Front Microbiol. 2018 Feb 21;9:274. doi: 10.3389/fmicb.2018.00274. eCollection 2018. Review.


YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae.

Teixeira MC, Monteiro PT, Palma M, Costa C, Godinho CP, Pais P, Cavalheiro M, Antunes M, Lemos A, Pedreira T, Sá-Correia I.

Nucleic Acids Res. 2018 Jan 4;46(D1):D348-D353. doi: 10.1093/nar/gkx842.


Membrane Phosphoproteomics of Yeast Early Response to Acetic Acid: Role of Hrk1 Kinase and Lipid Biosynthetic Pathways, in Particular Sphingolipids.

Guerreiro JF, Mira NP, Santos AXS, Riezman H, Sá-Correia I.

Front Microbiol. 2017 Jul 12;8:1302. doi: 10.3389/fmicb.2017.01302. eCollection 2017.


Heterologous expression of the yeast Tpo1p or Pdr5p membrane transporters in Arabidopsis confers plant xenobiotic tolerance.

Remy E, Niño-González M, Godinho CP, Cabrito TR, Teixeira MC, Sá-Correia I, Duque P.

Sci Rep. 2017 Jul 3;7(1):4529. doi: 10.1038/s41598-017-04534-7.


Structure of O-Antigen and Hybrid Biosynthetic Locus in Burkholderia cenocepacia Clonal Variants Recovered from a Cystic Fibrosis Patient.

Hassan AA, Maldonado RF, Dos Santos SC, Di Lorenzo F, Silipo A, Coutinho CP, Cooper VS, Molinaro A, Valvano MA, Sá-Correia I.

Front Microbiol. 2017 Jun 8;8:1027. doi: 10.3389/fmicb.2017.01027. eCollection 2017.


Genome sequence of the highly weak-acid-tolerant Zygosaccharomyces bailii IST302, amenable to genetic manipulations and physiological studies.

Palma M, Münsterkötter M, Peça J, Güldener U, Sá-Correia I.

FEMS Yeast Res. 2017 Jun 1;17(4). doi: 10.1093/femsyr/fox025.


Yeast response and tolerance to benzoic acid involves the Gcn4- and Stp1-regulated multidrug/multixenobiotic resistance transporter Tpo1.

Godinho CP, Mira NP, Cabrito TR, Teixeira MC, Alasoo K, Guerreiro JF, Sá-Correia I.

Appl Microbiol Biotechnol. 2017 Jun;101(12):5005-5018. doi: 10.1007/s00253-017-8277-6. Epub 2017 Apr 13.


3D map distribution of metallic nanoparticles in whole cells using MeV ion microscopy.

Vasco MS, Alves LC, Corregidor V, Correia D, Godinho CP, Sá-Correia I, Bettiol A, Watt F, Pinheiro T.

J Microsc. 2017 Aug;267(2):227-236. doi: 10.1111/jmi.12561. Epub 2017 Apr 10.


Improvement of yeast tolerance to acetic acid through Haa1 transcription factor engineering: towards the underlying mechanisms.

Swinnen S, Henriques SF, Shrestha R, Ho PW, Sá-Correia I, Nevoigt E.

Microb Cell Fact. 2017 Jan 9;16(1):7. doi: 10.1186/s12934-016-0621-5.


1H-NMR-Based Endometabolome Profiles of Burkholderia cenocepacia Clonal Variants Retrieved from a Cystic Fibrosis Patient during Chronic Infection.

Moreira AS, Lourenço AB, Sá-Correia I.

Front Microbiol. 2016 Dec 20;7:2024. doi: 10.3389/fmicb.2016.02024. eCollection 2016.


Using dendritic cells to evaluate how Burkholderia cenocepacia clonal isolates from a chronically infected cystic fibrosis patient subvert immune functions.

Guadalupe Cabral M, Pereira M, Silva Z, Iria I, Coutinho C, Lopes A, Sá-Correia I, Videira PA.

Med Microbiol Immunol. 2017 Apr;206(2):111-123. doi: 10.1007/s00430-016-0488-4. Epub 2016 Dec 16.


The CgHaa1-Regulon Mediates Response and Tolerance to Acetic Acid Stress in the Human Pathogen Candida glabrata.

Bernardo RT, Cunha DV, Wang C, Pereira L, Silva S, Salazar SB, Schröder MS, Okamoto M, Takahashi-Nakaguchi A, Chibana H, Aoyama T, Sá-Correia I, Azeredo J, Butler G, Mira NP.

G3 (Bethesda). 2017 Jan 5;7(1):1-18. doi: 10.1534/g3.116.034660.


A quantitative proteomic approach to highlight Phragmites sp. adaptation mechanisms to chemical stress induced by a textile dyeing pollutant.

Ferreira RA, Roma-Rodrigues C, Davies LC, Sá-Correia I, Martins-Dias S.

Sci Total Environ. 2016 Dec 15;573:788-798. doi: 10.1016/j.scitotenv.2016.08.169. Epub 2016 Sep 1.


Sphingolipid biosynthesis upregulation by TOR complex 2-Ypk1 signaling during yeast adaptive response to acetic acid stress.

Guerreiro JF, Muir A, Ramachandran S, Thorner J, Sá-Correia I.

Biochem J. 2016 Dec 1;473(23):4311-4325. Epub 2016 Sep 26.


Variation of Burkholderia cenocepacia virulence potential during cystic fibrosis chronic lung infection.

Moreira AS, Mil-Homens D, Sousa SA, Coutinho CP, Pinto-de-Oliveira A, Ramos CG, Dos Santos SC, Fialho AM, Leitão JH, Sá-Correia I.

Virulence. 2017 Aug 18;8(6):782-796. doi: 10.1080/21505594.2016.1237334. Epub 2016 Sep 21.


The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts.

Monteiro PT, Pais P, Costa C, Manna S, Sá-Correia I, Teixeira MC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D597-D603. doi: 10.1093/nar/gkw817. Epub 2016 Sep 12.


Lipopolysaccharide modification in Gram-negative bacteria during chronic infection.

Maldonado RF, Sá-Correia I, Valvano MA.

FEMS Microbiol Rev. 2016 Jul;40(4):480-93. doi: 10.1093/femsre/fuw007. Epub 2016 Apr 12. Review.


Mitochondrial proteomics of the acetic acid - induced programmed cell death response in a highly tolerant Zygosaccharomyces bailii - derived hybrid strain.

Guerreiro JF, Sampaio-Marques B, Soares R, Coelho AV, Leão C, Ludovico P, Sá-Correia I.

Microb Cell. 2016 Jan 22;3(2):65-78. doi: 10.15698/mic2016.02.477.


Search for genes responsible for the remarkably high acetic acid tolerance of a Zygosaccharomyces bailii-derived interspecies hybrid strain.

Palma M, Roque Fde C, Guerreiro JF, Mira NP, Queiroz L, Sá-Correia I.

BMC Genomics. 2015 Dec 16;16:1070. doi: 10.1186/s12864-015-2278-6.


SNaPBceBcon: a Practical Tool for Identification and Genotyping of Burkholderia cepacia and Burkholderia contaminans.

Araujo R, Caramalho R, Coutinho C, Sá-Correia I.

J Clin Microbiol. 2016 Feb;54(2):483-8. doi: 10.1128/JCM.02476-15. Epub 2015 Dec 9.


Predicting Gene and Genomic Regulation in Saccharomyces cerevisiae, using the YEASTRACT Database: A Step-by-Step Guided Analysis.

Teixeira MC, Monteiro PT, Sá-Correia I.

Methods Mol Biol. 2016;1361:391-404. doi: 10.1007/978-1-4939-3079-1_22.


Phenotypic characterization of an international Pseudomonas aeruginosa reference panel: strains of cystic fibrosis (CF) origin show less in vivo virulence than non-CF strains.

Cullen L, Weiser R, Olszak T, Maldonado RF, Moreira AS, Slachmuylders L, Brackman G, Paunova-Krasteva TS, Zarnowiec P, Czerwonka G, Reilly J, Drevinek P, Kaca W, Melter O, De Soyza A, Perry A, Winstanley C, Stoitsova SR, Lavigne R, Mahenthiralingam E, Sá-Correia I, Coenye T, Drulis-Kawa Z, Augustyniak D, Valvano MA, McClean S.

Microbiology. 2015 Oct;161(10):1961-77. doi: 10.1099/mic.0.000155. Epub 2015 Aug 6.


Incidence of Burkholderia contaminans at a cystic fibrosis centre with an unusually high representation of Burkholderia cepacia during 15 years of epidemiological surveillance.

Coutinho CP, Barreto C, Pereira L, Lito L, Melo Cristino J, Sá-Correia I.

J Med Microbiol. 2015 Aug;64(8):927-35. doi: 10.1099/jmm.0.000094. Epub 2015 May 22.


Yeast toxicogenomics: lessons from a eukaryotic cell model and cell factory.

dos Santos SC, Sá-Correia I.

Curr Opin Biotechnol. 2015 Jun;33:183-91. doi: 10.1016/j.copbio.2015.03.001. Epub 2015 Mar 24. Review.


Investigation of the multifaceted iron acquisition strategies of Burkholderia cenocepacia.

Tyrrell J, Whelan N, Wright C, Sá-Correia I, McClean S, Thomas M, Callaghan M.

Biometals. 2015 Apr;28(2):367-80. doi: 10.1007/s10534-015-9840-1. Epub 2015 Mar 1.


The major facilitator superfamily transporter ZIFL2 modulates cesium and potassium homeostasis in Arabidopsis.

Remy E, Cabrito TR, Batista RA, Teixeira MC, Sá-Correia I, Duque P.

Plant Cell Physiol. 2015 Jan;56(1):148-62. doi: 10.1093/pcp/pcu157. Epub 2014 Nov 4.


Genome-wide screening of Saccharomyces cerevisiae genes required to foster tolerance towards industrial wheat straw hydrolysates.

Pereira FB, Teixeira MC, Mira NP, Sá-Correia I, Domingues L.

J Ind Microbiol Biotechnol. 2014 Dec;41(12):1753-61. doi: 10.1007/s10295-014-1519-z. Epub 2014 Oct 7.


Transmission line model analysis of transcription factors binding to oligoduplexes - differentiation of the effect of single nucleotide modifications.

Rodrigues RM, de-Carvalho J, Henriques SF, Mira NP, Sá-Correia I, Ferreira GN.

Analyst. 2014 Aug 21;139(16):3871-4. doi: 10.1039/c4an00709c.


Phylogenetic and syntenic analyses of the 12-spanner drug:H(+) antiporter family 1 (DHA1) in pathogenic Candida species: evolution of MDR1 and FLU1 genes.

Dias PJ, Sá-Correia I.

Genomics. 2014 Jul;104(1):45-57. doi: 10.1016/j.ygeno.2014.05.005. Epub 2014 Jun 5.


MFS multidrug transporters in pathogenic fungi: do they have real clinical impact?

Costa C, Dias PJ, Sá-Correia I, Teixeira MC.

Front Physiol. 2014 May 28;5:197. doi: 10.3389/fphys.2014.00197. eCollection 2014. Review.


MFS transporters required for multidrug/multixenobiotic (MD/MX) resistance in the model yeast: understanding their physiological function through post-genomic approaches.

Dos Santos SC, Teixeira MC, Dias PJ, Sá-Correia I.

Front Physiol. 2014 May 8;5:180. doi: 10.3389/fphys.2014.00180. eCollection 2014. Review.


Intron retention in the 5'UTR of the novel ZIF2 transporter enhances translation to promote zinc tolerance in arabidopsis.

Remy E, Cabrito TR, Batista RA, Hussein MA, Teixeira MC, Athanasiadis A, Sá-Correia I, Duque P.

PLoS Genet. 2014 May 15;10(5):e1004375. doi: 10.1371/journal.pgen.1004375. eCollection 2014.


Burkholderia dolosa phenotypic variation during the decline in lung function of a cystic fibrosis patient during 5.5 years of chronic colonization.

Moreira AS, Coutinho CP, Azevedo P, Lito L, Melo-Cristino J, Sá-Correia I.

J Med Microbiol. 2014 Apr;63(Pt 4):594-601. doi: 10.1099/jmm.0.069849-0. Epub 2014 Jan 27.


The genome sequence of the highly acetic acid-tolerant Zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant.

Mira NP, Münsterkötter M, Dias-Valada F, Santos J, Palma M, Roque FC, Guerreiro JF, Rodrigues F, Sousa MJ, Leão C, Güldener U, Sá-Correia I.

DNA Res. 2014 Jun;21(3):299-313. doi: 10.1093/dnares/dst058. Epub 2014 Jan 21.


Conformational and mechanical changes of DNA upon transcription factor binding detected by a QCM and transmission line model.

de-Carvalho J, Rodrigues RM, Tomé B, Henriques SF, Mira NP, Sá-Correia I, Ferreira GN.

Analyst. 2014 Apr 21;139(8):1847-55. doi: 10.1039/c3an01682j.


Proteomic profiling of Burkholderia cenocepacia clonal isolates with different virulence potential retrieved from a cystic fibrosis patient during chronic lung infection.

Madeira A, dos Santos SC, Santos PM, Coutinho CP, Tyrrell J, McClean S, Callaghan M, Sá-Correia I.

PLoS One. 2013 Dec 13;8(12):e83065. doi: 10.1371/journal.pone.0083065. eCollection 2013.


Developing an international Pseudomonas aeruginosa reference panel.

De Soyza A, Hall AJ, Mahenthiralingam E, Drevinek P, Kaca W, Drulis-Kawa Z, Stoitsova SR, Toth V, Coenye T, Zlosnik JE, Burns JL, Sá-Correia I, De Vos D, Pirnay JP, Kidd TJ, Reid D, Manos J, Klockgether J, Wiehlmann L, Tümmler B, McClean S, Winstanley C; EU FP7 funded COST Action BM1003 “Cell surface virulence determinants of cystic fibrosis pathogens”.

Microbiologyopen. 2013 Dec;2(6):1010-23. doi: 10.1002/mbo3.141. Epub 2013 Nov 11.


The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae.

Teixeira MC, Monteiro PT, Guerreiro JF, Gonçalves JP, Mira NP, dos Santos SC, Cabrito TR, Palma M, Costa C, Francisco AP, Madeira SC, Oliveira AL, Freitas AT, Sá-Correia I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D161-6. doi: 10.1093/nar/gkt1015. Epub 2013 Oct 28.


The dual role of candida glabrata drug:H+ antiporter CgAqr1 (ORF CAGL0J09944g) in antifungal drug and acetic acid resistance.

Costa C, Henriques A, Pires C, Nunes J, Ohno M, Chibana H, Sá-Correia I, Teixeira MC.

Front Microbiol. 2013 Jun 26;4:170. doi: 10.3389/fmicb.2013.00170. eCollection 2013.

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