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Items: 30

1.

Fecal Host Transcriptomics for Non-Invasive Human Mucosal Immune Profiling: Proof of Concept in Clostridium Difficile Infection.

Schlaberg R, Barrett A, Edes K, Graves M, Paul L, Rychert J, Lopansri BK, Leung DT.

Pathog Immun. 2018;3(2):164-180. doi: 10.20411/pai.v3i2.250. Epub 2018 Sep 12.

2.

Evaluation of the Vitek MS v3.0 Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry System for Identification of Mycobacterium and Nocardia Species.

Body BA, Beard MA, Slechta ES, Hanson KE, Barker AP, Babady NE, McMillen T, Tang YW, Brown-Elliott BA, Iakhiaeva E, Vasireddy R, Vasireddy S, Smith T, Wallace RJ Jr, Turner S, Curtis L, Butler-Wu S, Rychert J.

J Clin Microbiol. 2018 May 25;56(6). pii: e00237-18. doi: 10.1128/JCM.00237-18. Print 2018 Jun.

3.

Multicenter Evaluation of the Vitek MS v3.0 System for the Identification of Filamentous Fungi.

Rychert J, Slechta ES, Barker AP, Miranda E, Babady NE, Tang YW, Gibas C, Wiederhold N, Sutton D, Hanson KE.

J Clin Microbiol. 2018 Jan 24;56(2). pii: e01353-17. doi: 10.1128/JCM.01353-17. Print 2018 Feb.

4.

Acute Infections, Cost per Infection and Turnaround Time in Three United States Hospital Laboratories Using Fourth-Generation Antigen-Antibody Human Immunodeficiency Virus Immunoassays.

Wesolowski LG, Nasrullah M, Coombs RW, Rosenberg E, Ethridge SF, Hutchinson AB, Dragavon J, Rychert J, Nolte FS, Madory JE, Werner BG.

Open Forum Infect Dis. 2015 Dec 9;3(1):ofv188. doi: 10.1093/ofid/ofv188. eCollection 2016 Jan.

5.

Multicenter evaluation of the BD max enteric bacterial panel PCR assay for rapid detection of Salmonella spp., Shigella spp., Campylobacter spp. (C. jejuni and C. coli), and Shiga toxin 1 and 2 genes.

Harrington SM, Buchan BW, Doern C, Fader R, Ferraro MJ, Pillai DR, Rychert J, Doyle L, Lainesse A, Karchmer T, Mortensen JE.

J Clin Microbiol. 2015 May;53(5):1639-47. doi: 10.1128/JCM.03480-14. Epub 2015 Mar 4.

6.

Immunogenicity of the Bivalent Oral Cholera Vaccine Shanchol in Haitian Adults With HIV Infection.

Ivers LC, Charles RC, Hilaire IJ, Mayo-Smith LM, Teng JE, Jerome JG, Rychert J, LaRocque RC, Xu P, Kovácˇ P, Ryan ET, Qadri F, Almazor CP, Franke MF, Harris JB.

J Infect Dis. 2015 Sep 1;212(5):779-83. doi: 10.1093/infdis/jiv108. Epub 2015 Feb 26.

7.

Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of Vibrio cholerae.

Rychert J, Creely D, Mayo-Smith LM, Calderwood SB, Ivers LC, Ryan ET, Boncy J, Qadri F, Ahmed D, Ferraro MJ, Harris JB.

J Clin Microbiol. 2015 Jan;53(1):329-31. doi: 10.1128/JCM.02666-14. Epub 2014 Nov 12.

8.

Multicenter comparison of laboratory performance in cytomegalovirus and Epstein-Barr virus viral load testing using international standards.

Rychert J, Danziger-Isakov L, Yen-Lieberman B, Storch G, Buller R, Sweet SC, Mehta AK, Cheeseman JA, Heeger P, Rosenberg ES, Fishman JA.

Clin Transplant. 2014 Dec;28(12):1416-23. doi: 10.1111/ctr.12473. Epub 2014 Nov 13.

9.

Tumor necrosis factor α is associated with viral control and early disease progression in patients with HIV type 1 infection.

Vaidya SA, Korner C, Sirignano MN, Amero M, Bazner S, Rychert J, Allen TM, Rosenberg ES, Bosch RJ, Altfeld M.

J Infect Dis. 2014 Oct 1;210(7):1042-6. doi: 10.1093/infdis/jiu206. Epub 2014 Mar 31.

10.

Multicenter validation of the VITEK MS v2.0 MALDI-TOF mass spectrometry system for the identification of fastidious gram-negative bacteria.

Branda JA, Rychert J, Burnham CA, Bythrow M, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia LF, Westblade LF, Ferraro MJ.

Diagn Microbiol Infect Dis. 2014 Feb;78(2):129-31. doi: 10.1016/j.diagmicrobio.2013.08.013. Epub 2013 Dec 8.

PMID:
24321357
11.

Temporal effect of HLA-B*57 on viral control during primary HIV-1 infection.

Vaidya SA, Streeck H, Beckwith N, Ghebremichael M, Pereyra F, Kwon DS, Addo MM, Rychert J, Routy JP, Jessen H, Kelleher AD, Hecht F, Sekaly RP, Carrington M, Walker BD, Allen TM, Rosenberg ES, Altfeld M.

Retrovirology. 2013 Nov 18;10:139. doi: 10.1186/1742-4690-10-139.

12.

Reply to "risks of 'blind' automated identification systems in medical microbiology".

Westblade LF, Jennemann R, Branda JA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Burnham CA.

J Clin Microbiol. 2013 Nov;51(11):3912. doi: 10.1128/JCM.02349-13. No abstract available.

13.

Multi-center evaluation of the VITEK® MS system for mass spectrometric identification of non-Enterobacteriaceae Gram-negative bacilli.

Manji R, Bythrow M, Branda JA, Burnham CA, Ferraro MJ, Garner OB, Jennemann R, Lewinski MA, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Westblade LF, Ginocchio CC.

Eur J Clin Microbiol Infect Dis. 2014 Mar;33(3):337-46. doi: 10.1007/s10096-013-1961-2. Epub 2013 Sep 10.

PMID:
24019163
14.

Multi-centre evaluation of mass spectrometric identification of anaerobic bacteria using the VITEK® MS system.

Garner O, Mochon A, Branda J, Burnham CA, Bythrow M, Ferraro M, Ginocchio C, Jennemann R, Manji R, Procop GW, Richter S, Rychert J, Sercia L, Westblade L, Lewinski M.

Clin Microbiol Infect. 2014 Apr;20(4):335-9. doi: 10.1111/1469-0691.12317. Epub 2013 Aug 9.

15.

Identification of Enterobacteriaceae by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry using the VITEK MS system.

Richter SS, Sercia L, Branda JA, Burnham CA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Rychert JA, Westblade LF, Procop GW.

Eur J Clin Microbiol Infect Dis. 2013 Dec;32(12):1571-8. doi: 10.1007/s10096-013-1912-y. Epub 2013 Jul 2.

PMID:
23818163
16.

Performance of the Vitek MS v2.0 system in distinguishing Streptococcus pneumoniae from nonpneumococcal species of the Streptococcus mitis group.

Branda JA, Markham RP, Garner CD, Rychert JA, Ferraro MJ.

J Clin Microbiol. 2013 Sep;51(9):3079-82. doi: 10.1128/JCM.00824-13. Epub 2013 Jun 19.

17.

Multicenter study evaluating the Vitek MS system for identification of medically important yeasts.

Westblade LF, Jennemann R, Branda JA, Bythrow M, Ferraro MJ, Garner OB, Ginocchio CC, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Rychert JA, Sercia L, Burnham CA.

J Clin Microbiol. 2013 Jul;51(7):2267-72. doi: 10.1128/JCM.00680-13. Epub 2013 May 8.

18.

Multicenter evaluation of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria.

Rychert J, Burnham CA, Bythrow M, Garner OB, Ginocchio CC, Jennemann R, Lewinski MA, Manji R, Mochon AB, Procop GW, Richter SS, Sercia L, Westblade LF, Ferraro MJ, Branda JA.

J Clin Microbiol. 2013 Jul;51(7):2225-31. doi: 10.1128/JCM.00682-13. Epub 2013 May 8.

19.

A monoclonal antibody against lymphocyte function-associated antigen-1 decreases HIV-1 replication by inducing the secretion of an antiviral soluble factor.

Rychert J, Jones L, McGrath G, Bazner S, Rosenberg ES.

Virol J. 2013 Apr 18;10:120. doi: 10.1186/1743-422X-10-120.

20.

Functional characterization of HLA-G⁺ regulatory T cells in HIV-1 infection.

Li C, Toth I, Schulze Zur Wiesch J, Pereyra F, Rychert J, Rosenberg ES, van Lunzen J, Lichterfeld M, Yu XG.

PLoS Pathog. 2013 Jan;9(1):e1003140. doi: 10.1371/journal.ppat.1003140. Epub 2013 Jan 31.

21.

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, Macalalad AR, Berlin AM, Malboeuf CM, Ryan EM, Gnerre S, Zody MC, Erlich RL, Green LM, Berical A, Wang Y, Casali M, Streeck H, Bloom AK, Dudek T, Tully D, Newman R, Axten KL, Gladden AD, Battis L, Kemper M, Zeng Q, Shea TP, Gujja S, Zedlack C, Gasser O, Brander C, Hess C, Günthard HF, Brumme ZL, Brumme CJ, Bazner S, Rychert J, Tinsley JP, Mayer KH, Rosenberg E, Pereyra F, Levin JZ, Young SK, Jessen H, Altfeld M, Birren BW, Walker BD, Allen TM.

PLoS Pathog. 2012;8(3):e1002529. doi: 10.1371/journal.ppat.1002529. Epub 2012 Mar 8.

22.

HIV-specific cytolytic CD4 T cell responses during acute HIV infection predict disease outcome.

Soghoian DZ, Jessen H, Flanders M, Sierra-Davidson K, Cutler S, Pertel T, Ranasinghe S, Lindqvist M, Davis I, Lane K, Rychert J, Rosenberg ES, Piechocka-Trocha A, Brass AL, Brenchley JM, Walker BD, Streeck H.

Sci Transl Med. 2012 Feb 29;4(123):123ra25. doi: 10.1126/scitranslmed.3003165.

23.

Dendritic cell dysfunction during primary HIV-1 infection.

Huang J, Yang Y, Al-Mozaini M, Burke PS, Beamon J, Carrington MF, Seiss K, Rychert J, Rosenberg ES, Lichterfeld M, Yu XG.

J Infect Dis. 2011 Nov 15;204(10):1557-62. doi: 10.1093/infdis/jir616. Epub 2011 Oct 3.

24.

Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers.

Vigneault F, Woods M, Buzon MJ, Li C, Pereyra F, Crosby SD, Rychert J, Church G, Martinez-Picado J, Rosenberg ES, Telenti A, Yu XG, Lichterfeld M.

J Virol. 2011 Mar;85(6):3015-9. doi: 10.1128/JVI.01846-10. Epub 2010 Dec 22.

25.

HIV-1-specific interleukin-21+ CD4+ T cell responses contribute to durable viral control through the modulation of HIV-specific CD8+ T cell function.

Chevalier MF, Jülg B, Pyo A, Flanders M, Ranasinghe S, Soghoian DZ, Kwon DS, Rychert J, Lian J, Muller MI, Cutler S, McAndrew E, Jessen H, Pereyra F, Rosenberg ES, Altfeld M, Walker BD, Streeck H.

J Virol. 2011 Jan;85(2):733-41. doi: 10.1128/JVI.02030-10. Epub 2010 Nov 3.

26.

Detection of HIV gp120 in plasma during early HIV infection is associated with increased proinflammatory and immunoregulatory cytokines.

Rychert J, Strick D, Bazner S, Robinson J, Rosenberg E.

AIDS Res Hum Retroviruses. 2010 Oct;26(10):1139-45. doi: 10.1089/aid.2009.0290. Epub 2010 Aug 19.

27.

Sequence variation occurs in CD4 epitopes during early HIV infection.

Rychert J, Saindon S, Placek S, Daskalakis D, Rosenberg E.

J Acquir Immune Defic Syndr. 2007 Nov 1;46(3):261-7.

PMID:
18167642
28.
29.

The antibody response to SIV in lactating rhesus macaques.

Rychert J, Amedee AM.

J Acquir Immune Defic Syndr. 2005 Feb 1;38(2):135-41.

PMID:
15671797
30.

Viral and immunological factors associated with breast milk transmission of SIV in rhesus macaques.

Amedee AM, Rychert J, Lacour N, Fresh L, Ratterree M.

Retrovirology. 2004 Jul 14;1:17.

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