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Items: 1 to 50 of 72


The interplay between cerebellum and basal ganglia in motor adaptation: A modeling study.

Todorov DI, Capps RA, Barnett WH, Latash EM, Kim T, Hamade KC, Markin SN, Rybak IA, Molkov YI.

PLoS One. 2019 Apr 12;14(4):e0214926. doi: 10.1371/journal.pone.0214926. eCollection 2019.


The Functional Role of Striatal Cholinergic Interneurons in Reinforcement Learning From Computational Perspective.

Kim T, Capps RA, Hamade KC, Barnett WH, Todorov DI, Latash EM, Markin SN, Rybak IA, Molkov YI.

Front Neural Circuits. 2019 Feb 21;13:10. doi: 10.3389/fncir.2019.00010. eCollection 2019.


Computational modeling of brainstem circuits controlling locomotor frequency and gait.

Ausborn J, Shevtsova NA, Caggiano V, Danner SM, Rybak IA.

Elife. 2019 Jan 21;8. pii: e43587. doi: 10.7554/eLife.43587.


Organization of the core respiratory network: Insights from optogenetic and modeling studies.

Ausborn J, Koizumi H, Barnett WH, John TT, Zhang R, Molkov YI, Smith JC, Rybak IA.

PLoS Comput Biol. 2018 Apr 26;14(4):e1006148. doi: 10.1371/journal.pcbi.1006148. eCollection 2018 Apr.


Intralimb and Interlimb Cutaneous Reflexes during Locomotion in the Intact Cat.

Hurteau MF, Thibaudier Y, Dambreville C, Danner SM, Rybak IA, Frigon A.

J Neurosci. 2018 Apr 25;38(17):4104-4122. doi: 10.1523/JNEUROSCI.3288-17.2018. Epub 2018 Mar 21.


Computational modeling of spinal circuits controlling limb coordination and gaits in quadrupeds.

Danner SM, Shevtsova NA, Frigon A, Rybak IA.

Elife. 2017 Nov 22;6. pii: e31050. doi: 10.7554/eLife.31050.


State-dependent rhythmogenesis and frequency control in a half-center locomotor CPG.

Ausborn J, Snyder AC, Shevtsova NA, Rybak IA, Rubin JE.

J Neurophysiol. 2018 Jan 1;119(1):96-117. doi: 10.1152/jn.00550.2017. Epub 2017 Oct 4. Erratum in: J Neurophysiol. 2018 Mar 1;119(3):1248-1250.


From the motor cortex to the movement and back again.

Teka WW, Hamade KC, Barnett WH, Kim T, Markin SN, Rybak IA, Molkov YI.

PLoS One. 2017 Jun 20;12(6):e0179288. doi: 10.1371/journal.pone.0179288. eCollection 2017.


Reward Based Motor Adaptation Mediated by Basal Ganglia.

Kim T, Hamade KC, Todorov D, Barnett WH, Capps RA, Latash EM, Markin SN, Rybak IA, Molkov YI.

Front Comput Neurosci. 2017 Mar 31;11:19. doi: 10.3389/fncom.2017.00019. eCollection 2017.


Computational models of the neural control of breathing.

Molkov YI, Rubin JE, Rybak IA, Smith JC.

Wiley Interdiscip Rev Syst Biol Med. 2017 Mar;9(2). doi: 10.1002/wsbm.1371. Epub 2016 Dec 23. Review.


Organization of flexor-extensor interactions in the mammalian spinal cord: insights from computational modelling.

Shevtsova NA, Rybak IA.

J Physiol. 2016 Nov 1;594(21):6117-6131. doi: 10.1113/JP272437. Epub 2016 Jul 21.


Central control of interlimb coordination and speed-dependent gait expression in quadrupeds.

Danner SM, Wilshin SD, Shevtsova NA, Rybak IA.

J Physiol. 2016 Dec 1;594(23):6947-6967. doi: 10.1113/JP272787. Epub 2016 Nov 8.


Chemoreception and neuroplasticity in respiratory circuits.

Barnett WH, Abdala AP, Paton JF, Rybak IA, Zoccal DB, Molkov YI.

Exp Neurol. 2017 Jan;287(Pt 2):153-164. doi: 10.1016/j.expneurol.2016.05.036. Epub 2016 May 27. Review.


Perturbations of Respiratory Rhythm and Pattern by Disrupting Synaptic Inhibition within Pre-Bötzinger and Bötzinger Complexes.

Marchenko V, Koizumi H, Mosher B, Koshiya N, Tariq MF, Bezdudnaya TG, Zhang R, Molkov YI, Rybak IA, Smith JC.

eNeuro. 2016 May 13;3(2). pii: ENEURO.0011-16.2016. doi: 10.1523/ENEURO.0011-16.2016. eCollection 2016 Mar-Apr.


Mixed-mode oscillations and population bursting in the pre-Bötzinger complex.

Bacak BJ, Kim T, Smith JC, Rubin JE, Rybak IA.

Elife. 2016 Mar 14;5:e13403. doi: 10.7554/eLife.13403.


Organization of the Mammalian Locomotor CPG: Review of Computational Model and Circuit Architectures Based on Genetically Identified Spinal Interneurons(1,2,3).

Rybak IA, Dougherty KJ, Shevtsova NA.

eNeuro. 2015 Sep 22;2(5). pii: ENEURO.0069-15.2015. doi: 10.1523/ENEURO.0069-15.2015. eCollection 2015 Sep. Review.


Mechanisms of left-right coordination in mammalian locomotor pattern generation circuits: a mathematical modeling view.

Molkov YI, Bacak BJ, Talpalar AE, Rybak IA.

PLoS Comput Biol. 2015 May 13;11(5):e1004270. doi: 10.1371/journal.pcbi.1004270. eCollection 2015 May.


Organization of left-right coordination of neuronal activity in the mammalian spinal cord: Insights from computational modelling.

Shevtsova NA, Talpalar AE, Markin SN, Harris-Warrick RM, Kiehn O, Rybak IA.

J Physiol. 2015 Jun 1;593(11):2403-26. doi: 10.1113/JP270121.


A closed-loop model of the respiratory system: focus on hypercapnia and active expiration.

Molkov YI, Shevtsova NA, Park C, Ben-Tal A, Smith JC, Rubin JE, Rybak IA.

PLoS One. 2014 Oct 10;9(10):e109894. doi: 10.1371/journal.pone.0109894. eCollection 2014.


Physiological and pathophysiological interactions between the respiratory central pattern generator and the sympathetic nervous system.

Molkov YI, Zoccal DB, Baekey DM, Abdala AP, Machado BH, Dick TE, Paton JF, Rybak IA.

Prog Brain Res. 2014;212:1-23. doi: 10.1016/B978-0-444-63488-7.00001-X. Review.


Effects of glycinergic inhibition failure on respiratory rhythm and pattern generation.

Shevtsova NA, Büsselberg D, Molkov YI, Bischoff AM, Smith JC, Richter DW, Rybak IA.

Prog Brain Res. 2014;209:25-38. doi: 10.1016/B978-0-444-63274-6.00002-3.


Rhythmic bursting in the pre-Bötzinger complex: mechanisms and models.

Rybak IA, Molkov YI, Jasinski PE, Shevtsova NA, Smith JC.

Prog Brain Res. 2014;209:1-23. doi: 10.1016/B978-0-444-63274-6.00001-1.


Modelling genetic reorganization in the mouse spinal cord affecting left-right coordination during locomotion.

Rybak IA, Shevtsova NA, Kiehn O.

J Physiol. 2013 Nov 15;591(22):5491-508. doi: 10.1113/jphysiol.2013.261115. Epub 2013 Sep 30.


Computational models and emergent properties of respiratory neural networks.

Lindsey BG, Rybak IA, Smith JC.

Compr Physiol. 2012 Jul;2(3):1619-70. Review.


Activity-dependent changes in extracellular Ca2+ and K+ reveal pacemakers in the spinal locomotor-related network.

Brocard F, Shevtsova NA, Bouhadfane M, Tazerart S, Heinemann U, Rybak IA, Vinay L.

Neuron. 2013 Mar 20;77(6):1047-54. doi: 10.1016/j.neuron.2013.01.026.


Control of breathing by interacting pontine and pulmonary feedback loops.

Molkov YI, Bacak BJ, Dick TE, Rybak IA.

Front Neural Circuits. 2013 Feb 13;7:16. doi: 10.3389/fncir.2013.00016. eCollection 2013.


Brainstem respiratory networks: building blocks and microcircuits.

Smith JC, Abdala AP, Borgmann A, Rybak IA, Paton JF.

Trends Neurosci. 2013 Mar;36(3):152-62. doi: 10.1016/j.tins.2012.11.004. Epub 2012 Dec 17. Review.


Sodium and calcium mechanisms of rhythmic bursting in excitatory neural networks of the pre-Bötzinger complex: a computational modelling study.

Jasinski PE, Molkov YI, Shevtsova NA, Smith JC, Rybak IA.

Eur J Neurosci. 2013 Jan;37(2):212-30. doi: 10.1111/ejn.12042. Epub 2012 Nov 4.


Neuronal activity in the isolated mouse spinal cord during spontaneous deletions in fictive locomotion: insights into locomotor central pattern generator organization.

Zhong G, Shevtsova NA, Rybak IA, Harris-Warrick RM.

J Physiol. 2012 Oct 1;590(19):4735-59. doi: 10.1113/jphysiol.2012.240895. Epub 2012 Aug 6.


Motoneuronal and muscle synergies involved in cat hindlimb control during fictive and real locomotion: a comparison study.

Markin SN, Lemay MA, Prilutsky BI, Rybak IA.

J Neurophysiol. 2012 Apr;107(8):2057-71. doi: 10.1152/jn.00865.2011. Epub 2011 Dec 21.


A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: II. Phase asymmetry.

Spardy LE, Markin SN, Shevtsova NA, Prilutsky BI, Rybak IA, Rubin JE.

J Neural Eng. 2011 Dec;8(6):065004. doi: 10.1088/1741-2560/8/6/065004. Epub 2011 Nov 4.


A dynamical systems analysis of afferent control in a neuromechanical model of locomotion: I. Rhythm generation.

Spardy LE, Markin SN, Shevtsova NA, Prilutsky BI, Rybak IA, Rubin JE.

J Neural Eng. 2011 Dec;8(6):065003. doi: 10.1088/1741-2560/8/6/065003. Epub 2011 Nov 4.


Computational modelling of 5-HT receptor-mediated reorganization of the brainstem respiratory network.

Shevtsova NA, Manzke T, Molkov YI, Bischoff A, Smith JC, Rybak IA, Richter DW.

Eur J Neurosci. 2011 Oct;34(8):1276-91. doi: 10.1111/j.1460-9568.2011.07825.x. Epub 2011 Sep 7.


Vagal-dependent nonlinear variability in the respiratory pattern of anesthetized, spontaneously breathing rats.

Dhingra RR, Jacono FJ, Fishman M, Loparo KA, Rybak IA, Dick TE.

J Appl Physiol (1985). 2011 Jul;111(1):272-84. doi: 10.1152/japplphysiol.91196.2008. Epub 2011 Apr 28.


Intermittent hypoxia-induced sensitization of central chemoreceptors contributes to sympathetic nerve activity during late expiration in rats.

Molkov YI, Zoccal DB, Moraes DJ, Paton JF, Machado BH, Rybak IA.

J Neurophysiol. 2011 Jun;105(6):3080-91. doi: 10.1152/jn.00070.2011. Epub 2011 Apr 6.


Interacting oscillations in neural control of breathing: modeling and qualitative analysis.

Rubin JE, Bacak BJ, Molkov YI, Shevtsova NA, Smith JC, Rybak IA.

J Comput Neurosci. 2011 Jun;30(3):607-32. doi: 10.1007/s10827-010-0281-0. Epub 2010 Oct 7.


Late-expiratory activity: emergence and interactions with the respiratory CpG.

Molkov YI, Abdala AP, Bacak BJ, Smith JC, Paton JF, Rybak IA.

J Neurophysiol. 2010 Nov;104(5):2713-29. doi: 10.1152/jn.00334.2010. Epub 2010 Sep 8.


Effect of baroreceptor stimulation on the respiratory pattern: insights into respiratory-sympathetic interactions.

Baekey DM, Molkov YI, Paton JF, Rybak IA, Dick TE.

Respir Physiol Neurobiol. 2010 Nov 30;174(1-2):135-45. doi: 10.1016/j.resp.2010.09.006. Epub 2010 Sep 15.


Afferent control of locomotor CPG: insights from a simple neuromechanical model.

Markin SN, Klishko AN, Shevtsova NA, Lemay MA, Prilutsky BI, Rybak IA.

Ann N Y Acad Sci. 2010 Jun;1198:21-34. doi: 10.1111/j.1749-6632.2010.05435.x.


Learning to breathe: control of the inspiratory-expiratory phase transition shifts from sensory- to central-dominated during postnatal development in rats.

Dutschmann M, Mörschel M, Rybak IA, Dick TE.

J Physiol. 2009 Oct 15;587(Pt 20):4931-48. doi: 10.1113/jphysiol.2009.174599. Epub 2009 Aug 24.


Structural and functional architecture of respiratory networks in the mammalian brainstem.

Smith JC, Abdala AP, Rybak IA, Paton JF.

Philos Trans R Soc Lond B Biol Sci. 2009 Sep 12;364(1529):2577-87. doi: 10.1098/rstb.2009.0081. Review.


Multiple pontomedullary mechanisms of respiratory rhythmogenesis.

Abdala AP, Rybak IA, Smith JC, Zoccal DB, Machado BH, St-John WM, Paton JF.

Respir Physiol Neurobiol. 2009 Aug 31;168(1-2):19-25. doi: 10.1016/j.resp.2009.06.011. Epub 2009 Jun 18.


Abdominal expiratory activity in the rat brainstem-spinal cord in situ: patterns, origins and implications for respiratory rhythm generation.

Abdala AP, Rybak IA, Smith JC, Paton JF.

J Physiol. 2009 Jul 15;587(Pt 14):3539-59. doi: 10.1113/jphysiol.2008.167502. Epub 2009 Jun 2.


Multiple rhythmic states in a model of the respiratory central pattern generator.

Rubin JE, Shevtsova NA, Ermentrout GB, Smith JC, Rybak IA.

J Neurophysiol. 2009 Apr;101(4):2146-65. doi: 10.1152/jn.90958.2008. Epub 2009 Feb 4.


Control of oscillation periods and phase durations in half-center central pattern generators: a comparative mechanistic analysis.

Daun S, Rubin JE, Rybak IA.

J Comput Neurosci. 2009 Aug;27(1):3-36. doi: 10.1007/s10827-008-0124-4. Epub 2009 Jan 6.


Reconfiguration of the pontomedullary respiratory network: a computational modeling study with coordinated in vivo experiments.

Rybak IA, O'Connor R, Ross A, Shevtsova NA, Nuding SC, Segers LS, Shannon R, Dick TE, Dunin-Barkowski WL, Orem JM, Solomon IC, Morris KF, Lindsey BG.

J Neurophysiol. 2008 Oct;100(4):1770-99. doi: 10.1152/jn.90416.2008. Epub 2008 Jul 23.


Organization of mammalian locomotor rhythm and pattern generation.

McCrea DA, Rybak IA.

Brain Res Rev. 2008 Jan;57(1):134-46. Epub 2007 Sep 5. Review.


Modeling the mammalian locomotor CPG: insights from mistakes and perturbations.

McCrea DA, Rybak IA.

Prog Brain Res. 2007;165:235-53. Review.


Spatial organization and state-dependent mechanisms for respiratory rhythm and pattern generation.

Rybak IA, Abdala AP, Markin SN, Paton JF, Smith JC.

Prog Brain Res. 2007;165:201-20. Review.


Spatial and functional architecture of the mammalian brain stem respiratory network: a hierarchy of three oscillatory mechanisms.

Smith JC, Abdala AP, Koizumi H, Rybak IA, Paton JF.

J Neurophysiol. 2007 Dec;98(6):3370-87. Epub 2007 Oct 3.

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