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Publication of UK NICE Clinical Guidelines 168 has not significantly changed the management of leg ulcers in primary care: An analysis of The Health Improvement Network database.

Davies HO, Popplewell M, Bate G, Ryan RP, Marshall TP, Bradbury AW.

Phlebology. 2019 Jun;34(5):311-316. doi: 10.1177/0268355518805658. Epub 2018 Oct 18.


Analysis of Effect of National Institute for Health and Care Excellence Clinical Guideline CG168 on Management of Varicose Veins in Primary Care Using the Health Improvement Network Database.

Davies HOB, Popplewell M, Bate G, Ryan RP, Marshall TP, Bradbury AW.

Eur J Vasc Endovasc Surg. 2018 Dec;56(6):880-884. doi: 10.1016/j.ejvs.2018.07.023. Epub 2018 Aug 24.


Correction to "Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK".

Chin KH, Liang JM, Yang JG, Shih MS, Tu ZL, Wang YC, Sun XH, Hu NJ, Liang ZX, Dow JM, Ryan RP, Chou SH.

Biochemistry. 2018 Jul 17;57(28):4236. doi: 10.1021/acs.biochem.8b00686. Epub 2018 Jul 9. No abstract available.


Predictors of human immunodeficiency virus (HIV) infection in primary care among adults living in developed countries: a systematic review.

Rumbwere Dube BN, Marshall TP, Ryan RP, Omonijo M.

Syst Rev. 2018 Jun 2;7(1):82. doi: 10.1186/s13643-018-0744-3.


Retraction for Fouhy et al., "Diffusible Signal Factor-Dependent Cell-Cell Signaling and Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia".

Fouhy Y, Scanlon K, Schouest K, Spillane C, Crossman L, Avison MB, Ryan RP, Dow JM.

J Bacteriol. 2018 May 24;200(12). pii: e00235-18. doi: 10.1128/JB.00235-18. Print 2018 Jun 15. No abstract available.


Retraction for McCarthy et al., "The Ax21 Protein Is a Cell-Cell Signal That Regulates Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia".

McCarthy Y, Dow JM, Ryan RP.

J Bacteriol. 2017 Apr 25;199(10). pii: e00156-17. doi: 10.1128/JB.00156-17. Print 2017 May 15. No abstract available.


Predictors of human immunodeficiency virus (HIV) infection in primary care: a systematic review protocol.

Rumbwere Dube BN, Marshall TP, Ryan RP.

Syst Rev. 2016 Sep 20;5(1):158. doi: 10.1186/s13643-016-0333-2.


Combating chronic bacterial infections by manipulating cyclic nucleotide-regulated biofilm formation.

An SQ, Ryan RP.

Future Med Chem. 2016 Jun;8(9):949-61. doi: 10.4155/fmc-2015-0002. Epub 2016 Jun 15. Review.


Functional and genomic insights into the pathogenesis of Burkholderia species to rice.

Naughton LM, An SQ, Hwang I, Chou SH, He YQ, Tang JL, Ryan RP, Dow JM.

Environ Microbiol. 2016 Mar;18(3):780-90. doi: 10.1111/1462-2920.13189. Epub 2016 Jan 21. Review.


Evidence of the Importance of Nox4 in Production of Hypertension in Dahl Salt-Sensitive Rats.

Cowley AW Jr, Yang C, Zheleznova NN, Staruschenko A, Kurth T, Rein L, Kumar V, Sadovnikov K, Dayton A, Hoffman M, Ryan RP, Skelton MM, Salehpour F, Ranji M, Geurts A.

Hypertension. 2016 Feb;67(2):440-50. doi: 10.1161/HYPERTENSIONAHA.115.06280. Epub 2015 Dec 7.


The DSF Family of Cell-Cell Signals: An Expanding Class of Bacterial Virulence Regulators.

Ryan RP, An SQ, Allan JH, McCarthy Y, Dow JM.

PLoS Pathog. 2015 Jul 16;11(7):e1004986. doi: 10.1371/journal.ppat.1004986. eCollection 2015 Jul. Review.


Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK.

Chin KH, Liang JM, Yang JG, Shih MS, Tu ZL, Wang YC, Sun XH, Hu NJ, Liang ZX, Dow JM, Ryan RP, Chou SH.

Biochemistry. 2015 Aug 11;54(31):4936-51. doi: 10.1021/acs.biochem.5b00633. Epub 2015 Jul 27. Erratum in: Biochemistry. 2018 Jul 17;57(28):4236.


Haemophilus influenzae responds to glucocorticoids used in asthma therapy by modulation of biofilm formation and antibiotic resistance.

Earl CS, Keong TW, An SQ, Murdoch S, McCarthy Y, Garmendia J, Ward J, Dow JM, Yang L, O'Toole GA, Ryan RP.

EMBO Mol Med. 2015 Aug;7(8):1018-33. doi: 10.15252/emmm.201505088. Retraction in: EMBO Mol Med. 2018 Mar 12;:.


The changing face of asthma and its relation with microbes.

Earl CS, An SQ, Ryan RP.

Trends Microbiol. 2015 Jul;23(7):408-18. doi: 10.1016/j.tim.2015.03.005. Epub 2015 Mar 31. Review.


Null mutation of the nicotinamide adenine dinucleotide phosphate-oxidase subunit p67phox protects the Dahl-S rat from salt-induced reductions in medullary blood flow and glomerular filtration rate.

Evans LC, Ryan RP, Broadway E, Skelton MM, Kurth T, Cowley AW Jr.

Hypertension. 2015 Mar;65(3):561-8. doi: 10.1161/HYPERTENSIONAHA.114.04468. Epub 2014 Dec 8.


Novel cyclic di-GMP effectors of the YajQ protein family control bacterial virulence.

An SQ, Caly DL, McCarthy Y, Murdoch SL, Ward J, Febrer M, Dow JM, Ryan RP.

PLoS Pathog. 2014 Oct 16;10(10):e1004429. doi: 10.1371/journal.ppat.1004429. eCollection 2014 Oct.


Targeting cyclic di-GMP signalling: a strategy to control biofilm formation?

Caly DL, Bellini D, Walsh MA, Dow JM, Ryan RP.

Curr Pharm Des. 2015;21(1):12-24. Review.


Communication, cooperation, and social interactions: a report from the third Young Microbiologists Symposium on microbe signalling, organisation, and pathogenesis.

Caly DL, Coulthurst SJ, An SQ, Helaine S, Malone JG, Ryan RP.

J Bacteriol. 2014 Oct;196(20):3527-33. doi: 10.1128/JB.02029-14. Epub 2014 Jul 28.


Heterogeneity in ess transcriptional organization and variable contribution of the Ess/Type VII protein secretion system to virulence across closely related Staphylocccus aureus strains.

Kneuper H, Cao ZP, Twomey KB, Zoltner M, Jäger F, Cargill JS, Chalmers J, van der Kooi-Pol MM, van Dijl JM, Ryan RP, Hunter WN, Palmer T.

Mol Microbiol. 2014 Sep;93(5):928-43. doi: 10.1111/mmi.12707. Epub 2014 Jul 30.


Polybacterial human disease: the ills of social networking.

Short FL, Murdoch SL, Ryan RP.

Trends Microbiol. 2014 Sep;22(9):508-16. doi: 10.1016/j.tim.2014.05.007. Epub 2014 Jun 14. Review.


The PAS domain-containing histidine kinase RpfS is a second sensor for the diffusible signal factor of Xanthomonas campestris.

An SQ, Allan JH, McCarthy Y, Febrer M, Dow JM, Ryan RP.

Mol Microbiol. 2014 May;92(3):586-97. doi: 10.1111/mmi.12577. Epub 2014 Apr 2.


Microbiota and metabolite profiling reveal specific alterations in bacterial community structure and environment in the cystic fibrosis airway during exacerbation.

Twomey KB, Alston M, An SQ, O'Connell OJ, McCarthy Y, Swarbreck D, Febrer M, Dow JM, Plant BJ, Ryan RP.

PLoS One. 2013 Dec 17;8(12):e82432. doi: 10.1371/journal.pone.0082432. eCollection 2013.


Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.

Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero Á, Poulin L, Díaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robène-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A.

PLoS One. 2013 Nov 22;8(11):e79704. doi: 10.1371/journal.pone.0079704. eCollection 2013.


Crystal structure of an HD-GYP domain cyclic-di-GMP phosphodiesterase reveals an enzyme with a novel trinuclear catalytic iron centre.

Bellini D, Caly DL, McCarthy Y, Bumann M, An SQ, Dow JM, Ryan RP, Walsh MA.

Mol Microbiol. 2014 Jan;91(1):26-38. doi: 10.1111/mmi.12447. Epub 2013 Nov 24.


A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis.

An SQ, Chin KH, Febrer M, McCarthy Y, Yang JG, Liu CL, Swarbreck D, Rogers J, Maxwell Dow J, Chou SH, Ryan RP.

EMBO J. 2013 Sep 11;32(18):2430-8. doi: 10.1038/emboj.2013.165. Epub 2013 Jul 23. Erratum in: EMBO J. 2013 Oct 16;32(20):2779-81.


Proteomics analysis of the regulatory role of Rpf/DSF cell-to-cell signaling system in the virulence of Xanthomonas campestris.

O'Connell A, An SQ, McCarthy Y, Schulte F, Niehaus K, He YQ, Tang JL, Ryan RP, Dow JM.

Mol Plant Microbe Interact. 2013 Oct;26(10):1131-7. doi: 10.1094/MPMI-05-13-0155-R. Erratum in: Mol Plant Microbe Interact. 2017 Feb;30(2):cx.


Cyclic di-GMP signalling and the regulation of bacterial virulence.

Ryan RP.

Microbiology. 2013 Jul;159(Pt 7):1286-97. doi: 10.1099/mic.0.068189-0. Epub 2013 May 23. Review.


Progression of glomerular filtration rate reduction determined in conscious Dahl salt-sensitive hypertensive rats.

Cowley AW Jr, Ryan RP, Kurth T, Skelton MM, Schock-Kusch D, Gretz N.

Hypertension. 2013 Jul;62(1):85-90. doi: 10.1161/HYPERTENSIONAHA.113.01194. Epub 2013 Apr 29.


High-resolution transcriptional analysis of the regulatory influence of cell-to-cell signalling reveals novel genes that contribute to Xanthomonas phytopathogenesis.

An SQ, Febrer M, McCarthy Y, Tang DJ, Clissold L, Kaithakottil G, Swarbreck D, Tang JL, Rogers J, Dow JM, Ryan RP.

Mol Microbiol. 2013 Jun;88(6):1058-69. doi: 10.1111/mmi.12229. Epub 2013 Apr 26. Erratum in: Mol Microbiol. 2017 May;104(4):693-694.


Real-time electrochemical detection of ATP and H₂O₂ release in freshly isolated kidneys.

Palygin O, Levchenko V, Ilatovskaya DV, Pavlov TS, Ryan RP, Cowley AW Jr, Staruschenko A.

Am J Physiol Renal Physiol. 2013 Jul 1;305(1):F134-41. doi: 10.1152/ajprenal.00129.2013. Epub 2013 Apr 17.


Comparative transcriptomic analysis of the Burkholderia cepacia tyrosine kinase bceF mutant reveals a role in tolerance to stress, biofilm formation, and virulence.

Ferreira AS, Silva IN, Oliveira VH, Becker JD, Givskov M, Ryan RP, Fernandes F, Moreira LM.

Appl Environ Microbiol. 2013 May;79(9):3009-20. doi: 10.1128/AEM.00222-13. Epub 2013 Feb 22.


RsmA regulates biofilm formation in Xanthomonas campestris through a regulatory network involving cyclic di-GMP and the Clp transcription factor.

Lu XH, An SQ, Tang DJ, McCarthy Y, Tang JL, Dow JM, Ryan RP.

PLoS One. 2012;7(12):e52646. doi: 10.1371/journal.pone.0052646. Epub 2012 Dec 21.


Modelling co-infection of the cystic fibrosis lung by Pseudomonas aeruginosa and Burkholderia cenocepacia reveals influences on biofilm formation and host response.

Bragonzi A, Farulla I, Paroni M, Twomey KB, Pirone L, Lorè NI, Bianconi I, Dalmastri C, Ryan RP, Bevivino A.

PLoS One. 2012;7(12):e52330. doi: 10.1371/journal.pone.0052330. Epub 2012 Dec 21.


The exopolysaccharide gene cluster Bcam1330-Bcam1341 is involved in Burkholderia cenocepacia biofilm formation, and its expression is regulated by c-di-GMP and Bcam1349.

Fazli M, McCarthy Y, Givskov M, Ryan RP, Tolker-Nielsen T.

Microbiologyopen. 2013 Feb;2(1):105-22. doi: 10.1002/mbo3.61. Epub 2012 Dec 25.


Increased proliferative cells in the medullary thick ascending limb of the loop of Henle in the Dahl salt-sensitive rat.

Yang C, Stingo FC, Ahn KW, Liu P, Vannucci M, Laud PW, Skelton M, O'Connor P, Kurth T, Ryan RP, Moreno C, Tsaih SW, Patone G, Hummel O, Jacob HJ, Liang M, Cowley AW Jr.

Hypertension. 2013 Jan;61(1):208-15. doi: 10.1161/HYPERTENSIONAHA.112.199380. Epub 2012 Nov 26.


Socializing, networking and development: a report from the second 'Young Microbiologists Symposium on Microbe Signalling, Organization and Pathogenesis'.

Caly DL, Coulthurst SJ, Geoghegan JA, Malone JG, Ryan RP.

Mol Microbiol. 2012 Nov;86(3):501-12. doi: 10.1111/mmi.12016. Epub 2012 Sep 18.


Dynamic complex formation between HD-GYP, GGDEF and PilZ domain proteins regulates motility in Xanthomonas campestris.

Ryan RP, McCarthy Y, Kiely PA, O'Connor R, Farah CS, Armitage JP, Dow JM.

Mol Microbiol. 2012 Nov;86(3):557-67. doi: 10.1111/mmi.12000. Epub 2012 Aug 31. Retraction in: Mol Microbiol. 2017 May;104(3):533.


An orphan chemotaxis sensor regulates virulence and antibiotic tolerance in the human pathogen Pseudomonas aeruginosa.

McLaughlin HP, Caly DL, McCarthy Y, Ryan RP, Dow JM.

PLoS One. 2012;7(8):e42205. doi: 10.1371/journal.pone.0042205. Epub 2012 Aug 1.


Mitochondrial proteomic analysis reveals deficiencies in oxygen utilization in medullary thick ascending limb of Henle in the Dahl salt-sensitive rat.

Zheleznova NN, Yang C, Ryan RP, Halligan BD, Liang M, Greene AS, Cowley AW Jr.

Physiol Genomics. 2012 Sep 1;44(17):829-42. doi: 10.1152/physiolgenomics.00060.2012. Epub 2012 Jul 17.


When the PilZ don't work: effectors for cyclic di-GMP action in bacteria.

Ryan RP, Tolker-Nielsen T, Dow JM.

Trends Microbiol. 2012 May;20(5):235-42. doi: 10.1016/j.tim.2012.02.008. Epub 2012 Mar 21. Review.


Bacterial cis-2-unsaturated fatty acids found in the cystic fibrosis airway modulate virulence and persistence of Pseudomonas aeruginosa.

Twomey KB, O'Connell OJ, McCarthy Y, Dow JM, O'Toole GA, Plant BJ, Ryan RP.

ISME J. 2012 May;6(5):939-50. doi: 10.1038/ismej.2011.167. Epub 2011 Dec 1.


Increase of sodium delivery stimulates the mitochondrial respiratory chain H2O2 production in rat renal medullary thick ascending limb.

Ohsaki Y, O'Connor P, Mori T, Ryan RP, Dickinson BC, Chang CJ, Lu Y, Ito S, Cowley AW Jr.

Am J Physiol Renal Physiol. 2012 Jan 1;302(1):F95-F102. doi: 10.1152/ajprenal.00469.2011. Epub 2011 Oct 5.


The Ax21 protein is a cell-cell signal that regulates virulence in the nosocomial pathogen Stenotrophomonas maltophilia.

McCarthy Y, Dow JM, Ryan RP.

J Bacteriol. 2011 Nov;193(22):6375-8. doi: 10.1128/JB.05949-11. Epub 2011 Sep 9. Retraction in: J Bacteriol. 2017 Apr 25;199(10 ):.


The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia.

Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M, Ryan RP, Tolker-Nielsen T.

Mol Microbiol. 2011 Oct;82(2):327-41. doi: 10.1111/j.1365-2958.2011.07814.x. Epub 2011 Sep 7.


Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.


Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing.

Febrer M, McLay K, Caccamo M, Twomey KB, Ryan RP.

Trends Biotechnol. 2011 Nov;29(11):586-94. doi: 10.1016/j.tibtech.2011.06.004. Epub 2011 Jul 20. Review.


Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM.

Nat Rev Microbiol. 2011 May;9(5):344-55. doi: 10.1038/nrmicro2558. Epub 2011 Apr 11. Review.


NSAIDs acutely inhibit TRPC channels in freshly isolated rat glomeruli.

Ilatovskaya DV, Levchenko V, Ryan RP, Cowley AW Jr, Staruschenko A.

Biochem Biophys Res Commun. 2011 May 6;408(2):242-7. doi: 10.1016/j.bbrc.2011.04.005. Epub 2011 Apr 5.


Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.

Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB.

BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/1471-2164-12-146.

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