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Items: 26

1.

Temporal changes in genetic diversity and forage yield of perennial ryegrass in monoculture and in combination with red clover in swards.

Verwimp C, Ruttink T, Muylle H, Van Glabeke S, Cnops G, Quataert P, Honnay O, Roldán-Ruiz I.

PLoS One. 2018 Nov 8;13(11):e0206571. doi: 10.1371/journal.pone.0206571. eCollection 2018.

2.

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne).

Veeckman E, Van Glabeke S, Haegeman A, Muylle H, van Parijs FRD, Byrne SL, Asp T, Studer B, Rohde A, Roldán-Ruiz I, Vandepoele K, Ruttink T.

DNA Res. 2019 Feb 1;26(1):1-12. doi: 10.1093/dnares/dsy033.

PMID:
30325414
3.

Impact of Cross-Contamination Concentrations of Doxycycline Hyclate on the Microbial Ecosystem in an Ex Vivo Model of the Pig's Cecum.

De Mulder T, Rasschaert G, Van Coillie E, Van den Meersche T, Haegeman A, Ruttink T, de Wiele TV, Heyndrickx M.

Microb Drug Resist. 2018 Sep 19. doi: 10.1089/mdr.2018.0034. [Epub ahead of print]

PMID:
30234420
4.

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits.

Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F.

Nat Plants. 2018 Jul;4(7):473-484. doi: 10.1038/s41477-018-0166-1. Epub 2018 Jun 11.

PMID:
29892093
5.

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.

De Tender C, Devriese LI, Haegeman A, Maes S, Vangeyte J, Cattrijsse A, Dawyndt P, Ruttink T.

Environ Sci Technol. 2017 Jul 5;51(13):7350-7360. doi: 10.1021/acs.est.7b00697. Epub 2017 Jun 19.

PMID:
28562015
6.

An integrated strategy combining DNA walking and NGS to detect GMOs.

Fraiture MA, Herman P, Papazova N, De Loose M, Deforce D, Ruttink T, Roosens NH.

Food Chem. 2017 Oct 1;232:351-358. doi: 10.1016/j.foodchem.2017.03.067. Epub 2017 Mar 18.

7.

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

De Mulder T, Goossens K, Peiren N, Vandaele L, Haegeman A, De Tender C, Ruttink T, de Wiele TV, De Campeneere S.

FEMS Microbiol Ecol. 2017 Mar 1;93(3). doi: 10.1093/femsec/fiw251.

PMID:
28011597
8.

Orthology Guided Transcriptome Assembly of Italian Ryegrass and Meadow Fescue for Single-Nucleotide Polymorphism Discovery.

Stočes Š, Ruttink T, Bartoš J, Studer B, Yates S, Zwierzykowski Z, Abrouk M, Roldán-Ruiz I, Książczyk T, Rey E, Doležel J, Kopecký D.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.02.0017.

9.

Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences.

Veeckman E, Ruttink T, Vandepoele K.

Plant Cell. 2016 Aug;28(8):1759-68. doi: 10.1105/tpc.16.00349. Epub 2016 Aug 10.

10.

High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis.

Lootens P, Ruttink T, Rohde A, Combes D, Barre P, Roldán-Ruiz I.

Plant Methods. 2016 Jun 10;12:32. doi: 10.1186/s13007-016-0132-8. eCollection 2016.

11.

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing.

Willems S, Fraiture MA, Deforce D, De Keersmaecker SC, De Loose M, Ruttink T, Herman P, Van Nieuwerburgh F, Roosens N.

Food Chem. 2016 Feb 1;192:788-98. doi: 10.1016/j.foodchem.2015.07.074. Epub 2015 Jul 21.

12.

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.

De Tender CA, Devriese LI, Haegeman A, Maes S, Ruttink T, Dawyndt P.

Environ Sci Technol. 2015 Aug 18;49(16):9629-38. doi: 10.1021/acs.est.5b01093. Epub 2015 Aug 6.

PMID:
26204244
13.

Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne.

van Parijs FR, Ruttink T, Boerjan W, Haesaert G, Byrne SL, Asp T, Roldán-Ruiz I, Muylle H.

Plant Biol (Stuttg). 2015 Jul;17(4):877-92. doi: 10.1111/plb.12316. Epub 2015 Mar 13.

PMID:
25683375
14.

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification.

Yates SA, Swain MT, Hegarty MJ, Chernukin I, Lowe M, Allison GG, Ruttink T, Abberton MT, Jenkins G, Skøt L.

BMC Genomics. 2014 Jun 9;15:453. doi: 10.1186/1471-2164-15-453.

15.

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne.

Ruttink T, Sterck L, Rohde A, Bendixen C, Rouzé P, Asp T, Van de Peer Y, Roldan-Ruiz I.

Plant Biotechnol J. 2013 Jun;11(5):605-17. doi: 10.1111/pbi.12051. Epub 2013 Feb 21.

16.

Characterization of the cinnamoyl-coA reductase gene family of Lolium perenne.

Van Parijs FR, Ruttink T, Roldán-Ruiz I, Haesaert G, Van Bockstaele E, Muylle H.

Commun Agric Appl Biol Sci. 2012;77(1):257-61. No abstract available.

PMID:
22558792
17.

Bud set in poplar--genetic dissection of a complex trait in natural and hybrid populations.

Rohde A, Storme V, Jorge V, Gaudet M, Vitacolonna N, Fabbrini F, Ruttink T, Zaina G, Marron N, Dillen S, Steenackers M, Sabatti M, Morgante M, Boerjan W, Bastien C.

New Phytol. 2011 Jan;189(1):106-21. doi: 10.1111/j.1469-8137.2010.03469.x. Epub 2010 Oct 6.

18.

Molecular toolbox for the identification of unknown genetically modified organisms.

Ruttink T, Demeyer R, Van Gulck E, Van Droogenbroeck B, Querci M, Taverniers I, De Loose M.

Anal Bioanal Chem. 2010 Mar;396(6):2073-89. doi: 10.1007/s00216-009-3287-6. Epub 2009 Nov 25.

PMID:
19937431
19.

Knowledge-technology-based discovery of unauthorized genetically modified organisms.

Ruttink T, Morisset D, Van Droogenbroeck B, Lavrac N, Van Den Eede GL, Zel J, De Loose M.

Anal Bioanal Chem. 2010 Mar;396(6):1951-9. doi: 10.1007/s00216-009-3218-6. No abstract available.

PMID:
19911176
20.

Assessment of primer/template mismatch effects on real-time PCR amplification of target taxa for GMO quantification.

Ghedira R, Papazova N, Vuylsteke M, Ruttink T, Taverniers I, De Loose M.

J Agric Food Chem. 2009 Oct 28;57(20):9370-7. doi: 10.1021/jf901976a.

PMID:
19778057
21.

Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar.

Rohde A, Ruttink T, Hostyn V, Sterck L, Van Driessche K, Boerjan W.

J Exp Bot. 2007;58(15-16):4047-60. Epub 2007 Nov 26.

PMID:
18039739
22.

A molecular timetable for apical bud formation and dormancy induction in poplar.

Ruttink T, Arend M, Morreel K, Storme V, Rombauts S, Fromm J, Bhalerao RP, Boerjan W, Rohde A.

Plant Cell. 2007 Aug;19(8):2370-90. Epub 2007 Aug 10.

23.

ENOD40 affects elongation growth in tobacco Bright Yellow-2 cells by alteration of ethylene biosynthesis kinetics.

Ruttink T, Boot K, Kijne J, Bisseling T, Franssen H.

J Exp Bot. 2006;57(12):3271-82. Epub 2006 Sep 6.

PMID:
16957021
24.

Identification and characterization of a Zea mays line carrying a transposon-tagged ENOD40.

Compaan B, Ruttink T, Albrecht C, Meeley R, Bisseling T, Franssen H.

Biochim Biophys Acta. 2003 Oct 1;1629(1-3):84-91.

PMID:
14522083
25.

Quantitative NMR microscopy of osmotic stress responses in maize and pearl millet.

van der Weerd L, Claessens MM, Ruttink T, Vergeldt FJ, Schaafsma TJ, Van As H.

J Exp Bot. 2001 Dec;52(365):2333-43.

PMID:
11709583
26.

Characterization of position-induced spatial and temporal regulation of transgene promoter activity in plants.

van Leeuwen W, Ruttink T, Borst-Vrenssen AW, van der Plas LH, van der Krol AR.

J Exp Bot. 2001 May;52(358):949-59.

PMID:
11432912

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