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Items: 37

1.

IgG Fc galactosylation predicts response to methotrexate in early rheumatoid arthritis.

Lundström SL, Hensvold AH, Rutishauser D, Klareskog L, Ytterberg AJ, Zubarev RA, Catrina AI.

Arthritis Res Ther. 2017 Aug 9;19(1):182. doi: 10.1186/s13075-017-1389-7.

2.

Expression proteomics study to determine metallodrug targets and optimal drug combinations.

Lee RFS, Chernobrovkin A, Rutishauser D, Allardyce CS, Hacker D, Johnsson K, Zubarev RA, Dyson PJ.

Sci Rep. 2017 May 8;7(1):1590. doi: 10.1038/s41598-017-01643-1.

3.

SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics.

Lundström SL, Zhang B, Rutishauser D, Aarsland D, Zubarev RA.

Sci Rep. 2017 Feb 7;7:41929. doi: 10.1038/srep41929.

4.

Periostin is identified as a putative metastatic marker in breast cancer-derived exosomes.

Vardaki I, Ceder S, Rutishauser D, Baltatzis G, Foukakis T, Panaretakis T.

Oncotarget. 2016 Nov 15;7(46):74966-74978. doi: 10.18632/oncotarget.11663.

5.

Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples.

Heyder T, Kohler M, Tarasova NK, Haag S, Rutishauser D, Rivera NV, Sandin C, Mia S, Malmström V, Wheelock ÅM, Wahlström J, Holmdahl R, Eklund A, Zubarev RA, Grunewald J, Ytterberg AJ.

Mol Cell Proteomics. 2016 Sep;15(9):3017-29. doi: 10.1074/mcp.M116.060764. Epub 2016 Jul 24.

6.

Identification of proteins from human permanent erupted enamel.

Castiblanco GA, Rutishauser D, Ilag LL, Martignon S, Castellanos JE, Mejía W.

Eur J Oral Sci. 2015 Dec;123(6):390-5. doi: 10.1111/eos.12214. Epub 2015 Oct 3.

PMID:
26432388
7.

The Nucleus-Localized Epidermal Growth Factor Receptor Is SUMOylated.

Packham S, Lin Y, Zhao Z, Warsito D, Rutishauser D, Larsson O.

Biochemistry. 2015 Aug 25;54(33):5157-66. doi: 10.1021/acs.biochem.5b00640. Epub 2015 Aug 14.

PMID:
26244656
8.

Diagnostic urinary proteome profile for immunoglobulin a nephropathy.

Samavat S, Kalantari S, Nafar M, Rutishauser D, Rezaei-Tavirani M, Parvin M, Zubarev RA.

Iran J Kidney Dis. 2015 May;9(3):239-48.

9.

Effect of host plant and immune challenge on the levels of chemosensory and odorant-binding proteins in caterpillar salivary glands.

Celorio-Mancera Mde L, Ytterberg AJ, Rutishauser D, Janz N, Zubarev RA.

Insect Biochem Mol Biol. 2015 Jun;61:34-45. doi: 10.1016/j.ibmb.2015.04.006. Epub 2015 Apr 29. Erratum in: Insect Biochem Mol Biol. 2015 Sep;64:128.

PMID:
25934166
10.

Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel.

Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullén A, Yachnin J, Nilsson S, Panaretakis T.

Oncotarget. 2015 Aug 28;6(25):21740-54.

11.

Predictive urinary biomarkers for steroid-resistant and steroid-sensitive focal segmental glomerulosclerosis using high resolution mass spectrometry and multivariate statistical analysis.

Kalantari S, Nafar M, Rutishauser D, Samavat S, Rezaei-Tavirani M, Yang H, Zubarev RA.

BMC Nephrol. 2014 Sep 2;15:141. doi: 10.1186/1471-2369-15-141.

12.

Urinary prognostic biomarkers in patients with focal segmental glomerulosclerosis.

Kalantari S, Nafar M, Samavat S, Rezaei-Tavirani M, Rutishauser D, Zubarev R.

Nephrourol Mon. 2014 Mar 9;6(2):e16806. doi: 10.5812/numonthly.16806. eCollection 2014 Mar.

13.

Identification of a large protein network involved in epigenetic transmission in replicating DNA of embryonic stem cells.

Aranda S, Rutishauser D, Ernfors P.

Nucleic Acids Res. 2014 Jun;42(11):6972-86. doi: 10.1093/nar/gku374. Epub 2014 May 22.

14.

Shared immunological targets in the lungs and joints of patients with rheumatoid arthritis: identification and validation.

Ytterberg AJ, Joshua V, Reynisdottir G, Tarasova NK, Rutishauser D, Ossipova E, Haj Hensvold A, Eklund A, Sköld CM, Grunewald J, Malmström V, Jakobsson PJ, Rönnelid J, Padyukov L, Zubarev RA, Klareskog L, Catrina AI.

Ann Rheum Dis. 2015 Sep;74(9):1772-7. doi: 10.1136/annrheumdis-2013-204912. Epub 2014 May 9.

PMID:
24817415
15.

Binding of Pro-Gly-Pro at the active site of leukotriene A4 hydrolase/aminopeptidase and development of an epoxide hydrolase selective inhibitor.

Stsiapanava A, Olsson U, Wan M, Kleinschmidt T, Rutishauser D, Zubarev RA, Samuelsson B, Rinaldo-Matthis A, Haeggström JZ.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4227-32. doi: 10.1073/pnas.1402136111. Epub 2014 Mar 3.

16.

Prognostic polypeptide blood plasma biomarkers of Alzheimer's disease progression.

Yang H, Lyutvinskiy Y, Herukka SK, Soininen H, Rutishauser D, Zubarev RA.

J Alzheimers Dis. 2014;40(3):659-66. doi: 10.3233/JAD-132102.

PMID:
24503613
17.

Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography.

Kalantari S, Rutishauser D, Samavat S, Nafar M, Mahmudieh L, Rezaei-Tavirani M, Zubarev RA.

PLoS One. 2013 Dec 5;8(12):e80830. doi: 10.1371/journal.pone.0080830. eCollection 2013.

18.

Protein biomarkers in vernix with potential to predict the development of atopic eczema in early childhood.

Holm T, Rutishauser D, Kai-Larsen Y, Lyutvinskiy Y, Stenius F, Zubarev RA, Agerberth B, Alm J, Scheynius A.

Allergy. 2014 Jan;69(1):104-12. doi: 10.1111/all.12308. Epub 2013 Nov 11.

19.

Blood plasma IgG Fc glycans are significantly altered in Alzheimer's disease and progressive mild cognitive impairment.

Lundström SL, Yang H, Lyutvinskiy Y, Rutishauser D, Herukka SK, Soininen H, Zubarev RA.

J Alzheimers Dis. 2014;38(3):567-79. doi: 10.3233/JAD-131088.

PMID:
24028868
20.

Wobble decoding by the Escherichia coli selenocysteine insertion machinery.

Xu J, Croitoru V, Rutishauser D, Cheng Q, Arnér ES.

Nucleic Acids Res. 2013 Nov;41(21):9800-11. doi: 10.1093/nar/gkt764. Epub 2013 Aug 27.

21.

Employment of complementary dissociation techniques for body fluid characterization and biomarker discovery.

Good DM, Rutishauser D.

Methods Mol Biol. 2013;1002:223-32. doi: 10.1007/978-1-62703-360-2_18.

PMID:
23625407
22.

In silico instrumental response correction improves precision of label-free proteomics and accuracy of proteomics-based predictive models.

Lyutvinskiy Y, Yang H, Rutishauser D, Zubarev RA.

Mol Cell Proteomics. 2013 Aug;12(8):2324-31. doi: 10.1074/mcp.O112.023804. Epub 2013 Apr 15.

23.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.

Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, Svozil J, Wuyts N, Stitt M, Hilson P, Granier C, Gruissem W.

Mol Syst Biol. 2012;8:606. doi: 10.1038/msb.2012.39.

24.

Chemosensory proteins, major salivary factors in caterpillar mandibular glands.

Celorio-Mancera Mde L, Sundmalm SM, Vogel H, Rutishauser D, Ytterberg AJ, Zubarev RA, Janz N.

Insect Biochem Mol Biol. 2012 Oct;42(10):796-805. doi: 10.1016/j.ibmb.2012.07.008. Epub 2012 Aug 4.

PMID:
22885177
25.

PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios.

Bauer C, Kleinjung F, Rutishauser D, Panse C, Chadt A, Dreja T, Al-Hasani H, Reinert K, Schlapbach R, Schuchhardt J.

BMC Bioinformatics. 2012 Feb 16;13:34. doi: 10.1186/1471-2105-13-34.

26.

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).

Reiland S, Finazzi G, Endler A, Willig A, Baerenfaller K, Grossmann J, Gerrits B, Rutishauser D, Gruissem W, Rochaix JD, Baginsky S.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12955-60. doi: 10.1073/pnas.1104734108. Epub 2011 Jul 18.

27.

Extracellular hemoglobin polarizes the macrophage proteome toward Hb-clearance, enhanced antioxidant capacity and suppressed HLA class 2 expression.

Kaempfer T, Duerst E, Gehrig P, Roschitzki B, Rutishauser D, Grossmann J, Schoedon G, Vallelian F, Schaer DJ.

J Proteome Res. 2011 May 6;10(5):2397-408. doi: 10.1021/pr101230y. Epub 2011 Apr 14.

PMID:
21405025
28.

A crosstalk between β1 and β3 integrins controls glycine receptor and gephyrin trafficking at synapses.

Charrier C, Machado P, Tweedie-Cullen RY, Rutishauser D, Mansuy IM, Triller A.

Nat Neurosci. 2010 Nov;13(11):1388-95. doi: 10.1038/nn.2645. Epub 2010 Oct 10.

PMID:
20935643
29.

Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods.

Grossmann J, Roschitzki B, Panse C, Fortes C, Barkow-Oesterreicher S, Rutishauser D, Schlapbach R.

J Proteomics. 2010 Aug 5;73(9):1740-6. doi: 10.1016/j.jprot.2010.05.011. Epub 2010 May 31.

PMID:
20576481
30.

PARP1 ADP-ribosylates lysine residues of the core histone tails.

Messner S, Altmeyer M, Zhao H, Pozivil A, Roschitzki B, Gehrig P, Rutishauser D, Huang D, Caflisch A, Hottiger MO.

Nucleic Acids Res. 2010 Oct;38(19):6350-62. doi: 10.1093/nar/gkq463. Epub 2010 Jun 4.

31.

Phosphorylated serine and threonine residues promote site-specific fragmentation of singly charged, arginine-containing peptide ions.

Gehrig PM, Roschitzki B, Rutishauser D, Reiland S, Schlapbach R.

Rapid Commun Mass Spectrom. 2009 May;23(10):1435-45. doi: 10.1002/rcm.4019.

PMID:
19353557
32.

The comprehensive native interactome of a fully functional tagged prion protein.

Rutishauser D, Mertz KD, Moos R, Brunner E, Rülicke T, Calella AM, Aguzzi A.

PLoS One. 2009;4(2):e4446. doi: 10.1371/journal.pone.0004446. Epub 2009 Feb 11.

33.

The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry.

Potthast F, Gerrits B, Häkkinen J, Rutishauser D, Ahrens CH, Roschitzki B, Baerenfaller K, Munton RP, Walther P, Gehrig P, Seif P, Seeberger PH, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jul 1;854(1-2):173-82. Epub 2007 Apr 25.

PMID:
17513179
34.

Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations.

Munton RP, Tweedie-Cullen R, Livingstone-Zatchej M, Weinandy F, Waidelich M, Longo D, Gehrig P, Potthast F, Rutishauser D, Gerrits B, Panse C, Schlapbach R, Mansuy IM.

Mol Cell Proteomics. 2007 Feb;6(2):283-93. Epub 2006 Nov 17.

35.

Proteomic analysis of synaptosomes using isotope-coded affinity tags and mass spectrometry.

Schrimpf SP, Meskenaite V, Brunner E, Rutishauser D, Walther P, Eng J, Aebersold R, Sonderegger P.

Proteomics. 2005 Jul;5(10):2531-41.

PMID:
15984043
36.

Database independent detection of isotopically labeled MS/MS spectrum peptide pairs.

Potthast F, Ocenasek J, Rutishauser D, Pelikan M, Schlapbach R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2005 Mar 25;817(2):225-30.

PMID:
15686989
37.

Why is creatine kinase a dimer? Evidence for cooperativity between the two subunits.

Hornemann T, Rutishauser D, Wallimann T.

Biochim Biophys Acta. 2000 Jul 14;1480(1-2):365-73.

PMID:
10899637

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