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Items: 8


Boosting forward-time population genetic simulators through genotype compression.

Ruths T, Nakhleh L.

BMC Bioinformatics. 2013 Jun 14;14:192. doi: 10.1186/1471-2105-14-192.


Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topology.

Ruths T, Nakhleh L.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7754-9. doi: 10.1073/pnas.1217630110. Epub 2013 Apr 22.


Indirect and suboptimal control of gene expression is widespread in bacteria.

Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP.

Mol Syst Biol. 2013 Apr 16;9:660. doi: 10.1038/msb.2013.16.


ncDNA and drift drive binding site accumulation.

Ruths T, Nakhleh L.

BMC Evol Biol. 2012 Aug 30;12:159. doi: 10.1186/1471-2148-12-159.


Modeling protein structure at near atomic resolutions with Gorgon.

Baker ML, Abeysinghe SS, Schuh S, Coleman RA, Abrams A, Marsh MP, Hryc CF, Ruths T, Chiu W, Ju T.

J Struct Biol. 2011 May;174(2):360-73. doi: 10.1016/j.jsb.2011.01.015. Epub 2011 Feb 4.


GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L.

Bioinformatics. 2009 May 1;25(9):1178-84. doi: 10.1093/bioinformatics/btp128. Epub 2009 Mar 16.


Dynamics of supercooled liquids confined to the pores of sol-gel glass: a dynamic light scattering study.

Patkowski A, Ruths T, Fischer EW.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb;67(2 Pt 1):021501. Epub 2003 Feb 19.


Unusual features of long-range density fluctuations in glass-forming organic liquids: a Rayleigh and Rayleigh-Brillouin light scattering study.

Patkowski A, Fischer EW, Steffen W, Gläser H, Baumann M, Ruths T, Meier G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jun;63(6 Pt 1):061503. Epub 2001 May 23.


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