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Items: 18

1.

The Escherichia coli β-barrel assembly machinery is sensitized to perturbations under high membrane fluidity.

Storek KM, Vij R, Sun D, Smith PA, Koerber JT, Rutherford ST.

J Bacteriol. 2018 Oct 15. pii: JB.00517-18. doi: 10.1128/JB.00517-18. [Epub ahead of print]

2.

A targeted boost-and-sort immunization strategy using Escherichia coli BamA identifies rare growth inhibitory antibodies.

Vij R, Lin Z, Chiang N, Vernes JM, Storek KM, Park S, Chan J, Meng YG, Comps-Agrar L, Luan P, Lee S, Schneider K, Bevers J 3rd, Zilberleyb I, Tam C, Koth CM, Xu M, Gill A, Auerbach MR, Smith PA, Rutherford ST, Nakamura G, Seshasayee D, Payandeh J, Koerber JT.

Sci Rep. 2018 May 8;8(1):7136. doi: 10.1038/s41598-018-25609-z.

3.

Monoclonal antibody targeting the β-barrel assembly machine of Escherichia coli is bactericidal.

Storek KM, Auerbach MR, Shi H, Garcia NK, Sun D, Nickerson NN, Vij R, Lin Z, Chiang N, Schneider K, Wecksler AT, Skippington E, Nakamura G, Seshasayee D, Koerber JT, Payandeh J, Smith PA, Rutherford ST.

Proc Natl Acad Sci U S A. 2018 Apr 3;115(14):3692-3697. doi: 10.1073/pnas.1800043115. Epub 2018 Mar 19.

4.

Comprehensive analysis reveals how single nucleotides contribute to noncoding RNA function in bacterial quorum sensing.

Rutherford ST, Valastyan JS, Taillefumier T, Wingreen NS, Bassler BL.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E6038-47. doi: 10.1073/pnas.1518958112. Epub 2015 Oct 19.

5.

A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics.

Feng L, Rutherford ST, Papenfort K, Bagert JD, van Kessel JC, Tirrell DA, Wingreen NS, Bassler BL.

Cell. 2015 Jan 15;160(1-2):228-40. doi: 10.1016/j.cell.2014.11.051. Epub 2015 Jan 8.

6.

Quorum sensing regulates the osmotic stress response in Vibrio harveyi.

van Kessel JC, Rutherford ST, Cong JP, Quinodoz S, Healy J, Bassler BL.

J Bacteriol. 2015 Jan 1;197(1):73-80. doi: 10.1128/JB.02246-14. Epub 2014 Oct 13.

7.

Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation.

Shao Y, Feng L, Rutherford ST, Papenfort K, Bassler BL.

EMBO J. 2013 Jul 31;32(15):2158-71. doi: 10.1038/emboj.2013.155. Epub 2013 Jul 9.

8.

Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation.

Lennon CW, Ross W, Martin-Tumasz S, Toulokhonov I, Vrentas CE, Rutherford ST, Lee JH, Butcher SE, Gourse RL.

Genes Dev. 2012 Dec 1;26(23):2634-46. doi: 10.1101/gad.204693.112.

9.

Individual and combined roles of the master regulators AphA and LuxR in control of the Vibrio harveyi quorum-sensing regulon.

van Kessel JC, Rutherford ST, Shao Y, Utria AF, Bassler BL.

J Bacteriol. 2013 Feb;195(3):436-43. doi: 10.1128/JB.01998-12. Epub 2012 Nov 30.

10.

Bacterial quorum sensing: its role in virulence and possibilities for its control.

Rutherford ST, Bassler BL.

Cold Spring Harb Perspect Med. 2012 Nov 1;2(11). pii: a012427. doi: 10.1101/cshperspect.a012427. Review.

11.

AphA and LuxR/HapR reciprocally control quorum sensing in vibrios.

Rutherford ST, van Kessel JC, Shao Y, Bassler BL.

Genes Dev. 2011 Feb 15;25(4):397-408. doi: 10.1101/gad.2015011.

12.

Allosteric control of Escherichia coli rRNA promoter complexes by DksA.

Rutherford ST, Villers CL, Lee JH, Ross W, Gourse RL.

Genes Dev. 2009 Jan 15;23(2):236-48. doi: 10.1101/gad.1745409.

13.

Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein.

Lamour V, Rutherford ST, Kuznedelov K, Ramagopal UA, Gourse RL, Severinov K, Darst SA.

J Mol Biol. 2008 Nov 7;383(2):367-79. doi: 10.1016/j.jmb.2008.08.011. Epub 2008 Aug 12.

14.

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation.

Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Vassylyev DG, Ross W, Gourse RL.

J Mol Biol. 2008 Mar 21;377(2):551-64. doi: 10.1016/j.jmb.2008.01.042. Epub 2008 Jan 26. Erratum in: J Mol Biol. 2008 Jun 20;379(5):1130.

15.

Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase.

Rutherford ST, Lemke JJ, Vrentas CE, Gaal T, Ross W, Gourse RL.

J Mol Biol. 2007 Mar 2;366(4):1243-57. Epub 2006 Dec 12.

16.
17.

General pathway for turning on promoters transcribed by RNA polymerases containing alternative sigma factors.

Gourse RL, Ross W, Rutherford ST.

J Bacteriol. 2006 Jul;188(13):4589-91. Review. No abstract available.

18.

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