Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 53

1.

Bayesian counting of photobleaching steps with physical priors.

Garry J, Li Y, Shew B, Gradinaru CC, Rutenberg AD.

J Chem Phys. 2020 Jan 14;152(2):024110. doi: 10.1063/1.5132957.

PMID:
31941327
2.

Anomalously slow transport in single-file diffusion with slow binding kinetics.

Farrell SG, Rutenberg AD.

Phys Rev E. 2018 Aug;98(2-1):022114. doi: 10.1103/PhysRevE.98.022114.

PMID:
30253590
3.

Polymorphism of stable collagen fibrils.

Cameron S, Kreplak L, Rutenberg AD.

Soft Matter. 2018 Jun 13;14(23):4772-4783. doi: 10.1039/c8sm00377g.

PMID:
29799597
4.

Unlocking Collagen Proteolysis with a Gentle Pull.

Kreplak L, Rutenberg AD.

Biophys J. 2018 Feb 6;114(3):503-504. doi: 10.1016/j.bpj.2017.11.3788. No abstract available.

5.

Photobleaching of randomly rotating fluorescently decorated particles.

Taneja S, Rutenberg AD.

J Chem Phys. 2017 Sep 14;147(10):104105. doi: 10.1063/1.4989673.

PMID:
28915751
6.

Unifying aging and frailty through complex dynamical networks.

Rutenberg AD, Mitnitski AB, Farrell SG, Rockwood K.

Exp Gerontol. 2018 Jul 1;107:126-129. doi: 10.1016/j.exger.2017.08.027. Epub 2017 Aug 25. Review.

PMID:
28847723
7.

Aging, frailty and complex networks.

Mitnitski AB, Rutenberg AD, Farrell S, Rockwood K.

Biogerontology. 2017 Aug;18(4):433-446. doi: 10.1007/s10522-017-9684-x. Epub 2017 Mar 2. Review.

PMID:
28255823
8.

Network model of human aging: Frailty limits and information measures.

Farrell SG, Mitnitski AB, Rockwood K, Rutenberg AD.

Phys Rev E. 2016 Nov;94(5-1):052409. Epub 2016 Nov 18.

PMID:
27967091
9.

╬▒TAT1 controls longitudinal spreading of acetylation marks from open microtubules extremities.

Ly N, Elkhatib N, Bresteau E, Pi├ętrement O, Khaled M, Magiera MM, Janke C, Le Cam E, Rutenberg AD, Montagnac G.

Sci Rep. 2016 Oct 18;6:35624. doi: 10.1038/srep35624.

10.

Uniform spatial distribution of collagen fibril radii within tendon implies local activation of pC-collagen at individual fibrils.

Rutenberg AD, Brown AI, Kreplak L.

Phys Biol. 2016 Aug 25;13(4):046008. doi: 10.1088/1478-3975/13/4/046008.

PMID:
27559989
11.

Dynamical network model for age-related health deficits and mortality.

Taneja S, Mitnitski AB, Rockwood K, Rutenberg AD.

Phys Rev E. 2016 Feb;93(2):022309. doi: 10.1103/PhysRevE.93.022309. Epub 2016 Feb 29.

PMID:
26986354
12.

Single file diffusion into a semi-infinite tube.

Farrell SG, Brown AI, Rutenberg AD.

Phys Biol. 2015 Nov 23;12(6):064001. doi: 10.1088/1478-3975/12/6/064001.

PMID:
26595123
13.

Cluster coarsening on drops exhibits strong and sudden size-selectivity.

Brown AI, Rutenberg AD.

Soft Matter. 2015 May 21;11(19):3786-93. doi: 10.1039/c5sm00284b.

PMID:
25846269
14.

Lateral exchange smooths the way for vimentin filaments.

Kreplak L, Rutenberg AD.

Biophys J. 2014 Dec 16;107(12):2747-2748. doi: 10.1016/j.bpj.2014.10.050. No abstract available.

15.

An equilibrium double-twist model for the radial structure of collagen fibrils.

Brown AI, Kreplak L, Rutenberg AD.

Soft Matter. 2014 Nov 14;10(42):8500-11. doi: 10.1039/c4sm01359j.

PMID:
25238208
16.

Protein translocation without specific quality control in a computational model of the Tat system.

Nayak CR, Brown AI, Rutenberg AD.

Phys Biol. 2014 Aug 26;11(5):056005. doi: 10.1088/1478-3975/11/5/056005.

PMID:
25154305
17.

PEX16 contributes to peroxisome maintenance by constantly trafficking PEX3 via the ER.

Aranovich A, Hua R, Rutenberg AD, Kim PK.

J Cell Sci. 2014 Sep 1;127(Pt 17):3675-86. doi: 10.1242/jcs.146282. Epub 2014 Jul 7.

18.

Circumferential gap propagation in an anisotropic elastic bacterial sacculus.

Taneja S, Levitan BA, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012704. Epub 2014 Jan 7.

PMID:
24580254
19.

PEX5 and ubiquitin dynamics on mammalian peroxisome membranes.

Brown AI, Kim PK, Rutenberg AD.

PLoS Comput Biol. 2014 Jan;10(1):e1003426. doi: 10.1371/journal.pcbi.1003426. Epub 2014 Jan 16.

20.

A storage-based model of heterocyst commitment and patterning in cyanobacteria.

Brown AI, Rutenberg AD.

Phys Biol. 2014 Feb;11(1):016001. doi: 10.1088/1478-3975/11/1/016001. Epub 2014 Jan 3.

PMID:
24384886
21.

Stuttering Min oscillations within E. coli bacteria: a stochastic polymerization model.

Sengupta S, Derr J, Sain A, Rutenberg AD.

Phys Biol. 2012 Oct;9(5):056003. doi: 10.1088/1478-3975/9/5/056003. Epub 2012 Aug 29.

PMID:
22931851
22.

Heterocyst placement strategies to maximize the growth of cyanobacterial filaments.

Brown AI, Rutenberg AD.

Phys Biol. 2012 Aug;9(4):046002. doi: 10.1088/1478-3975/9/4/046002. Epub 2012 Jun 25.

PMID:
22733109
23.

Reconciling cyanobacterial fixed-nitrogen distributions and transport experiments with quantitative modelling.

Brown AI, Rutenberg AD.

Phys Biol. 2012 Feb;9(1):016007. doi: 10.1088/1478-3975/9/1/016007. Epub 2012 Feb 7.

PMID:
22313598
24.

Quantification of fluorophore copy number from intrinsic fluctuations during fluorescence photobleaching.

Nayak CR, Rutenberg AD.

Biophys J. 2011 Nov 2;101(9):2284-93. doi: 10.1016/j.bpj.2011.09.032. Epub 2011 Nov 1.

25.

Monodisperse domains by proteolytic control of the coarsening instability.

Derr J, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011928. Epub 2011 Jul 28.

PMID:
21867234
26.

Subcellular Min oscillations as a single-cell reporter of the action of polycations, protamine, and gentamicin on Escherichia coli.

Downing BP, Rutenberg AD, Touhami A, Jericho M.

PLoS One. 2009 Sep 30;4(9):e7285. doi: 10.1371/journal.pone.0007285.

27.

Effects of poly(L-lysine) substrates on attached Escherichia coli bacteria.

Colville K, Tompkins N, Rutenberg AD, Jericho MH.

Langmuir. 2010 Feb 16;26(4):2639-44. doi: 10.1021/la902826n.

PMID:
19761262
28.

Self-organization of the MinE protein ring in subcellular Min oscillations.

Derr J, Hopper JT, Sain A, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 1):011922. Epub 2009 Jul 27.

PMID:
19658744
29.

Pulling helices inside bacteria: imperfect helices and rings.

Allard JF, Rutenberg AD.

Phys Rev Lett. 2009 Apr 17;102(15):158105. Epub 2009 Apr 17.

PMID:
19518677
30.

Heterocyst patterns without patterning proteins in cyanobacterial filaments.

Allard JF, Hill AL, Rutenberg AD.

Dev Biol. 2007 Dec 1;312(1):427-34. Epub 2007 Sep 29.

31.

Steady-state helices of the actin homolog MreB inside bacteria: dynamics without motors.

Allard JF, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 1):031916. Epub 2007 Sep 14.

PMID:
17930280
32.

Clocking out: modeling phage-induced lysis of Escherichia coli.

Ryan GL, Rutenberg AD.

J Bacteriol. 2007 Jul;189(13):4749-55. Epub 2007 Apr 27. Erratum in: J Bacteriol. 2007 Sep;189(17):6506.

33.

Temperature dependence of MinD oscillation in Escherichia coli: running hot and fast.

Touhami A, Jericho M, Rutenberg AD.

J Bacteriol. 2006 Nov;188(21):7661-7. Epub 2006 Aug 25.

34.

Scaling state of dry two-dimensional froths: universal angle-deviations and structure.

Rutenberg AD, McCurdy MB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 1):011403. Epub 2006 Jan 13.

PMID:
16486136
35.

Maximally fast coarsening algorithms.

Cheng M, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 2):055701. Epub 2005 Nov 16.

PMID:
16383681
36.

Fast and accurate coarsening simulation with an unconditionally stable time step.

Vollmayr-Lee BP, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 2):066703. Epub 2003 Dec 23.

PMID:
14754351
37.

Diffusion of asymmetric swimmers.

Rutenberg AD, Richardson AJ, Montgomery CJ.

Phys Rev Lett. 2003 Aug 22;91(8):080601. Epub 2003 Aug 20.

PMID:
14525230
38.

Pattern formation inside bacteria: fluctuations due to the low copy number of proteins.

Howard M, Rutenberg AD.

Phys Rev Lett. 2003 Mar 28;90(12):128102. Epub 2003 Mar 27.

PMID:
12688905
39.
40.

Triangular anisotropies in driven diffusive systems: reconciliation of up and down.

Rutenberg AD, Yeung C.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Sep;60(3):2710-5.

PMID:
11970073
41.

Dynamical scaling: the two-dimensional XY model following a quench.

Rojas F, Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Jul;60(1):212-21.

PMID:
11969753
42.

Dynamic compartmentalization of bacteria: accurate division in E. coli.

Howard M, Rutenberg AD, de Vet S.

Phys Rev Lett. 2001 Dec 31;87(27 Pt 1):278102. Epub 2001 Dec 10.

PMID:
11800919
43.

Curved tails in polymerization-based bacterial motility.

Rutenberg AD, Grant M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Aug;64(2 Pt 1):021904. Epub 2001 Jul 19.

PMID:
11497617
44.

Stress-free spatial anisotropy in phase ordering.

Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Sep;54(3):R2181-R2184. No abstract available.

PMID:
9965436
45.

Nonequilibrium phase ordering with a global conservation law.

Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Jul;54(1):972-973. No abstract available.

PMID:
9965150
46.

Comment on "Theory of spinodal decomposition"

Rutenberg AD.

Phys Rev Lett. 1996 Jan 1;76(1):158. No abstract available.

PMID:
10060458
47.

Energy-scaling approach to phase-ordering growth laws.

Rutenberg AD, Bray AJ.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Jun;51(6):5499-5514. No abstract available.

PMID:
9963283
48.

Unwinding scaling violations in phase ordering.

Rutenberg AD, Bray AJ.

Phys Rev Lett. 1995 May 8;74(19):3836-3839. No abstract available.

PMID:
10058309
49.

Scaling violations with textures in two-dimensional phase ordering.

Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Apr;51(4):R2715-R2718. No abstract available.

PMID:
9963079
50.

Phase ordering of two-dimensional XY systems below the Kosterlitz-Thouless transition temperature.

Rutenberg AD, Bray AJ.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Mar;51(3):R1641-R1644. No abstract available.

PMID:
9962945

Supplemental Content

Loading ...
Support Center