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Items: 1 to 50 of 76

1.

Polymorphism of stable collagen fibrils.

Cameron S, Kreplak L, Rutenberg AD.

Soft Matter. 2018 Jun 13;14(23):4772-4783. doi: 10.1039/c8sm00377g.

PMID:
29799597
2.

Unlocking Collagen Proteolysis with a Gentle Pull.

Kreplak L, Rutenberg AD.

Biophys J. 2018 Feb 6;114(3):503-504. doi: 10.1016/j.bpj.2017.11.3788. No abstract available.

PMID:
29414694
3.

Soluble SLAMF6 Receptor Induces Strong CD8+ T-cell Effector Function and Improves Anti-Melanoma Activity In Vivo.

Eisenberg G, Engelstein R, Geiger-Maor A, Hajaj E, Merims S, Frankenburg S, Uzana R, Rutenberg A, Machlenkin A, Frei G, Peretz T, Lotem M.

Cancer Immunol Res. 2018 Feb;6(2):127-138. doi: 10.1158/2326-6066.CIR-17-0383. Epub 2018 Jan 5.

PMID:
29305520
4.

Photobleaching of randomly rotating fluorescently decorated particles.

Taneja S, Rutenberg AD.

J Chem Phys. 2017 Sep 14;147(10):104105. doi: 10.1063/1.4989673.

PMID:
28915751
5.

Unifying aging and frailty through complex dynamical networks.

Rutenberg AD, Mitnitski AB, Farrell SG, Rockwood K.

Exp Gerontol. 2018 Jul 1;107:126-129. doi: 10.1016/j.exger.2017.08.027. Epub 2017 Aug 25. Review.

PMID:
28847723
6.

Aging, frailty and complex networks.

Mitnitski AB, Rutenberg AD, Farrell S, Rockwood K.

Biogerontology. 2017 Aug;18(4):433-446. doi: 10.1007/s10522-017-9684-x. Epub 2017 Mar 2. Review.

PMID:
28255823
7.

Network model of human aging: Frailty limits and information measures.

Farrell SG, Mitnitski AB, Rockwood K, Rutenberg AD.

Phys Rev E. 2016 Nov;94(5-1):052409. Epub 2016 Nov 18.

PMID:
27967091
8.

αTAT1 controls longitudinal spreading of acetylation marks from open microtubules extremities.

Ly N, Elkhatib N, Bresteau E, Piétrement O, Khaled M, Magiera MM, Janke C, Le Cam E, Rutenberg AD, Montagnac G.

Sci Rep. 2016 Oct 18;6:35624. doi: 10.1038/srep35624.

9.

Uniform spatial distribution of collagen fibril radii within tendon implies local activation of pC-collagen at individual fibrils.

Rutenberg AD, Brown AI, Kreplak L.

Phys Biol. 2016 Aug 25;13(4):046008. doi: 10.1088/1478-3975/13/4/046008.

PMID:
27559989
10.

Dynamical network model for age-related health deficits and mortality.

Taneja S, Mitnitski AB, Rockwood K, Rutenberg AD.

Phys Rev E. 2016 Feb;93(2):022309. doi: 10.1103/PhysRevE.93.022309. Epub 2016 Feb 29.

PMID:
26986354
11.

Single file diffusion into a semi-infinite tube.

Farrell SG, Brown AI, Rutenberg AD.

Phys Biol. 2015 Nov 23;12(6):064001. doi: 10.1088/1478-3975/12/6/064001.

PMID:
26595123
12.

Cluster coarsening on drops exhibits strong and sudden size-selectivity.

Brown AI, Rutenberg AD.

Soft Matter. 2015 May 21;11(19):3786-93. doi: 10.1039/c5sm00284b.

PMID:
25846269
13.

Lateral exchange smooths the way for vimentin filaments.

Kreplak L, Rutenberg AD.

Biophys J. 2014 Dec 16;107(12):2747-2748. doi: 10.1016/j.bpj.2014.10.050. No abstract available.

14.

An equilibrium double-twist model for the radial structure of collagen fibrils.

Brown AI, Kreplak L, Rutenberg AD.

Soft Matter. 2014 Nov 14;10(42):8500-11. doi: 10.1039/c4sm01359j.

PMID:
25238208
15.

Protein translocation without specific quality control in a computational model of the Tat system.

Nayak CR, Brown AI, Rutenberg AD.

Phys Biol. 2014 Aug 26;11(5):056005. doi: 10.1088/1478-3975/11/5/056005.

PMID:
25154305
16.

PEX16 contributes to peroxisome maintenance by constantly trafficking PEX3 via the ER.

Aranovich A, Hua R, Rutenberg AD, Kim PK.

J Cell Sci. 2014 Sep 1;127(Pt 17):3675-86. doi: 10.1242/jcs.146282. Epub 2014 Jul 7.

17.

Circumferential gap propagation in an anisotropic elastic bacterial sacculus.

Taneja S, Levitan BA, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jan;89(1):012704. Epub 2014 Jan 7.

PMID:
24580254
18.

PEX5 and ubiquitin dynamics on mammalian peroxisome membranes.

Brown AI, Kim PK, Rutenberg AD.

PLoS Comput Biol. 2014 Jan;10(1):e1003426. doi: 10.1371/journal.pcbi.1003426. Epub 2014 Jan 16.

19.

A storage-based model of heterocyst commitment and patterning in cyanobacteria.

Brown AI, Rutenberg AD.

Phys Biol. 2014 Feb;11(1):016001. doi: 10.1088/1478-3975/11/1/016001. Epub 2014 Jan 3.

PMID:
24384886
20.

Synthesis and enhanced thermal stability of albumins@alumina: towards injectable sol-gel materials.

Rutenberg A, Vinogradov VV, Avnir D.

Chem Commun (Camb). 2013 Jun 25;49(50):5636-8. doi: 10.1039/c3cc41696h. Epub 2013 May 16.

PMID:
23682354
21.

Stuttering Min oscillations within E. coli bacteria: a stochastic polymerization model.

Sengupta S, Derr J, Sain A, Rutenberg AD.

Phys Biol. 2012 Oct;9(5):056003. doi: 10.1088/1478-3975/9/5/056003. Epub 2012 Aug 29.

PMID:
22931851
22.

Heterocyst placement strategies to maximize the growth of cyanobacterial filaments.

Brown AI, Rutenberg AD.

Phys Biol. 2012 Aug;9(4):046002. doi: 10.1088/1478-3975/9/4/046002. Epub 2012 Jun 25.

PMID:
22733109
23.

Intermolecular chiral assemblies in R(-) and S(+) 2-butanol detected by microcalorimetry measurements.

Cogan U, Shpigelman A, Portnaya I, Rutenberg A, Scolnik Y, Shinitzky M.

Chirality. 2012 Jul;24(7):500-5. doi: 10.1002/chir.22033. Epub 2012 May 9.

PMID:
22570171
24.

Reconciling cyanobacterial fixed-nitrogen distributions and transport experiments with quantitative modelling.

Brown AI, Rutenberg AD.

Phys Biol. 2012 Feb;9(1):016007. doi: 10.1088/1478-3975/9/1/016007. Epub 2012 Feb 7.

PMID:
22313598
25.

Quantification of fluorophore copy number from intrinsic fluctuations during fluorescence photobleaching.

Nayak CR, Rutenberg AD.

Biophys J. 2011 Nov 2;101(9):2284-93. doi: 10.1016/j.bpj.2011.09.032. Epub 2011 Nov 1.

26.

Monodisperse domains by proteolytic control of the coarsening instability.

Derr J, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011928. Epub 2011 Jul 28.

PMID:
21867234
27.

Quantitative digital in situ senescence-associated β-galactosidase assay.

Shlush LI, Itzkovitz S, Cohen A, Rutenberg A, Berkovitz R, Yehezkel S, Shahar H, Selig S, Skorecki K.

BMC Cell Biol. 2011 Apr 15;12:16. doi: 10.1186/1471-2121-12-16.

28.

Subcellular Min oscillations as a single-cell reporter of the action of polycations, protamine, and gentamicin on Escherichia coli.

Downing BP, Rutenberg AD, Touhami A, Jericho M.

PLoS One. 2009 Sep 30;4(9):e7285. doi: 10.1371/journal.pone.0007285.

29.

Effects of poly(L-lysine) substrates on attached Escherichia coli bacteria.

Colville K, Tompkins N, Rutenberg AD, Jericho MH.

Langmuir. 2010 Feb 16;26(4):2639-44. doi: 10.1021/la902826n.

PMID:
19761262
30.

Self-organization of the MinE protein ring in subcellular Min oscillations.

Derr J, Hopper JT, Sain A, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jul;80(1 Pt 1):011922. Epub 2009 Jul 27.

PMID:
19658744
31.

Pulling helices inside bacteria: imperfect helices and rings.

Allard JF, Rutenberg AD.

Phys Rev Lett. 2009 Apr 17;102(15):158105. Epub 2009 Apr 17.

PMID:
19518677
32.

Heterocyst patterns without patterning proteins in cyanobacterial filaments.

Allard JF, Hill AL, Rutenberg AD.

Dev Biol. 2007 Dec 1;312(1):427-34. Epub 2007 Sep 29.

33.

Steady-state helices of the actin homolog MreB inside bacteria: dynamics without motors.

Allard JF, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 1):031916. Epub 2007 Sep 14.

PMID:
17930280
34.
35.

Clocking out: modeling phage-induced lysis of Escherichia coli.

Ryan GL, Rutenberg AD.

J Bacteriol. 2007 Jul;189(13):4749-55. Epub 2007 Apr 27. Erratum in: J Bacteriol. 2007 Sep;189(17):6506.

36.

Temperature dependence of MinD oscillation in Escherichia coli: running hot and fast.

Touhami A, Jericho M, Rutenberg AD.

J Bacteriol. 2006 Nov;188(21):7661-7. Epub 2006 Aug 25.

37.

Scaling state of dry two-dimensional froths: universal angle-deviations and structure.

Rutenberg AD, McCurdy MB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 1):011403. Epub 2006 Jan 13.

PMID:
16486136
38.

Maximally fast coarsening algorithms.

Cheng M, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 2):055701. Epub 2005 Nov 16.

PMID:
16383681
39.

Fast and accurate coarsening simulation with an unconditionally stable time step.

Vollmayr-Lee BP, Rutenberg AD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 2):066703. Epub 2003 Dec 23.

PMID:
14754351
40.

Diffusion of asymmetric swimmers.

Rutenberg AD, Richardson AJ, Montgomery CJ.

Phys Rev Lett. 2003 Aug 22;91(8):080601. Epub 2003 Aug 20.

PMID:
14525230
41.

Pattern formation inside bacteria: fluctuations due to the low copy number of proteins.

Howard M, Rutenberg AD.

Phys Rev Lett. 2003 Mar 28;90(12):128102. Epub 2003 Mar 27.

PMID:
12688905
42.
43.

Triangular anisotropies in driven diffusive systems: reconciliation of up and down.

Rutenberg AD, Yeung C.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Sep;60(3):2710-5.

PMID:
11970073
44.

Dynamical scaling: the two-dimensional XY model following a quench.

Rojas F, Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 Jul;60(1):212-21.

PMID:
11969753
45.

Dynamic compartmentalization of bacteria: accurate division in E. coli.

Howard M, Rutenberg AD, de Vet S.

Phys Rev Lett. 2001 Dec 31;87(27 Pt 1):278102. Epub 2001 Dec 10.

PMID:
11800919
46.

Curved tails in polymerization-based bacterial motility.

Rutenberg AD, Grant M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Aug;64(2 Pt 1):021904. Epub 2001 Jul 19.

PMID:
11497617
47.

Stress-free spatial anisotropy in phase ordering.

Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Sep;54(3):R2181-R2184. No abstract available.

PMID:
9965436
48.

Nonequilibrium phase ordering with a global conservation law.

Rutenberg AD.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Jul;54(1):972-973. No abstract available.

PMID:
9965150
49.

Comment on "Theory of spinodal decomposition"

Rutenberg AD.

Phys Rev Lett. 1996 Jan 1;76(1):158. No abstract available.

PMID:
10060458
50.

Energy-scaling approach to phase-ordering growth laws.

Rutenberg AD, Bray AJ.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Jun;51(6):5499-5514. No abstract available.

PMID:
9963283

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