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Items: 1 to 50 of 180

1.

Evaluation of Human Milk Microbiota by 16S rRNA Gene Next-Generation Sequencing (NGS) and Cultivation/MALDI-TOF Mass Spectrometry Identification.

Treven P, Mahnič A, Rupnik M, Golob M, Pirš T, Matijašić BB, Lorbeg PM.

Front Microbiol. 2019 Nov 15;10:2612. doi: 10.3389/fmicb.2019.02612. eCollection 2019.

2.

Development and Implementation of Whole Genome Sequencing-Based Typing Schemes for Clostridioides difficile.

Janezic S, Rupnik M.

Front Public Health. 2019 Oct 24;7:309. doi: 10.3389/fpubh.2019.00309. eCollection 2019. Review.

3.

Proteotyping of Clostridioides difficile as Alternate Typing Method to Ribotyping Is Able to Distinguish the Ribotypes RT027 and RT176 From Other Ribotypes.

Emele MF, Joppe FM, Riedel T, Overmann J, Rupnik M, Cooper P, Kusumawati RL, Berger FK, Laukien F, Zimmermann O, Bohne W, Groß U, Bader O, Zautner AE.

Front Microbiol. 2019 Sep 10;10:2087. doi: 10.3389/fmicb.2019.02087. eCollection 2019.

4.

Clostridium (Clostridioides) difficile shedding by polar bears (Ursus maritimus) in the Canadian Arctic.

Weese JS, Salgado-Bierman F, Rupnik M, Smith DA, van Coeverden de Groot P.

Anaerobe. 2019 Jun;57:35-38. doi: 10.1016/j.anaerobe.2019.03.013. Epub 2019 Mar 14.

PMID:
30880150
5.

Molecular epidemiology of Clostridioides (previously Clostridium) difficile isolates from a university hospital in Minas Gerais, Brazil.

Diniz AN, de Oliveira Júnior CA, Vilela EG, Figueiredo HCP, Rupnik M, Wilcox MH, Fawley WN, Blanc DS, Faria Lobato FC, Silva ROS.

Anaerobe. 2019 Apr;56:34-39. doi: 10.1016/j.anaerobe.2019.01.010. Epub 2019 Jan 29.

PMID:
30703440
6.

MRSA diversity and the emergence of LA-MRSA in a large teaching hospital in Slovenia.

Kevorkijan BK, Petrovič Ž, Kocuvan A, Rupnik M.

Acta Microbiol Immunol Hung. 2019 Jun 1;66(2):235-246. doi: 10.1556/030.65.2018.052. Epub 2019 Jan 25.

PMID:
30678467
7.

Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort.

Mahnic A, Rupnik M.

PLoS One. 2018 Dec 20;13(12):e0209209. doi: 10.1371/journal.pone.0209209. eCollection 2018.

8.

High Clostridium difficile contamination rates of domestic and imported potatoes compared to some other vegetables in Slovenia.

Tkalec V, Janezic S, Skok B, Simonic T, Mesaric S, Vrabic T, Rupnik M.

Food Microbiol. 2019 Apr;78:194-200. doi: 10.1016/j.fm.2018.10.017. Epub 2018 Oct 30.

PMID:
30497603
9.

Prevalence and Strain Characterization of Clostridioides (Clostridium) difficile in Representative Regions of Germany, Ghana, Tanzania and Indonesia - A Comparative Multi-Center Cross-Sectional Study.

Seugendo M, Janssen I, Lang V, Hasibuan I, Bohne W, Cooper P, Daniel R, Gunka K, Kusumawati RL, Mshana SE, von Müller L, Okamo B, Ortlepp JR, Overmann J, Riedel T, Rupnik M, Zimmermann O, Groß U.

Front Microbiol. 2018 Aug 7;9:1843. doi: 10.3389/fmicb.2018.01843. eCollection 2018.

10.

Clinical epidemiology of Clostridium difficile infection among hospitalized patients with antibiotic-associated diarrhea in a university hospital of Brazil.

Lopes Cançado GG, Silveira Silva RO, Rupnik M, Nader AP, Starling de Carvalho J, Miana de Mattos Paixão G, Martins Resende BA, Faria Lobato FC, Vilela EG.

Anaerobe. 2018 Dec;54:65-71. doi: 10.1016/j.anaerobe.2018.08.005. Epub 2018 Aug 13.

PMID:
30114442
11.

Interactions Between Clostridioides difficile and Fecal Microbiota in in Vitro Batch Model: Growth, Sporulation, and Microbiota Changes.

Horvat S, Rupnik M.

Front Microbiol. 2018 Jul 24;9:1633. doi: 10.3389/fmicb.2018.01633. eCollection 2018.

12.

Clostridium difficile and Clostridioides difficile: Two validly published and correct names.

Oren A, Rupnik M.

Anaerobe. 2018 Aug;52:125-126. doi: 10.1016/j.anaerobe.2018.07.005. Epub 2018 Jul 20.

PMID:
30031828
13.

Dissemination of Clostridium difficile spores between environment and households: Dog paws and shoes.

Janezic S, Mlakar S, Rupnik M.

Zoonoses Public Health. 2018 Sep;65(6):669-674. doi: 10.1111/zph.12475. Epub 2018 Apr 23.

PMID:
29687626
14.

Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile.

Bletz S, Janezic S, Harmsen D, Rupnik M, Mellmann A.

J Clin Microbiol. 2018 May 25;56(6). pii: e01987-17. doi: 10.1128/JCM.01987-17. Print 2018 Jun.

15.

Loosening the shackles of scientific disciplines with network science: Reply to comments on "Network science of biological systems at different scales: A review".

Gosak M, Markovič R, Dolenšek J, Rupnik MS, Marhl M, Stožer A, Perc M.

Phys Life Rev. 2018 Mar;24:162-167. doi: 10.1016/j.plrev.2018.01.008. Epub 2018 Jan 31. No abstract available.

PMID:
29398557
16.

Non-human C. difficile Reservoirs and Sources: Animals, Food, Environment.

Rodriguez Diaz C, Seyboldt C, Rupnik M.

Adv Exp Med Biol. 2018;1050:227-243. doi: 10.1007/978-3-319-72799-8_13. Review.

PMID:
29383672
17.

Critical and Supercritical Spatiotemporal Calcium Dynamics in Beta Cells.

Gosak M, Stožer A, Markovič R, Dolenšek J, Perc M, Rupnik MS, Marhl M.

Front Physiol. 2017 Dec 22;8:1106. doi: 10.3389/fphys.2017.01106. eCollection 2017.

18.

The incidence of Clostridioides difficile and Clostridium perfringens netF-positive strains in diarrheic dogs.

Diniz AN, Coura FM, Rupnik M, Adams V, Stent TL, Rood JI, de Oliveira CA Jr, Lobato FCF, Silva ROS.

Anaerobe. 2018 Feb;49:58-62. doi: 10.1016/j.anaerobe.2017.12.003. Epub 2017 Dec 20.

PMID:
29274467
19.

Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans.

Knetsch CW, Kumar N, Forster SC, Connor TR, Browne HP, Harmanus C, Sanders IM, Harris SR, Turner L, Morris T, Perry M, Miyajima F, Roberts P, Pirmohamed M, Songer JG, Weese JS, Indra A, Corver J, Rupnik M, Wren BW, Riley TV, Kuijper EJ, Lawley TD.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01384-17. doi: 10.1128/JCM.01384-17. Print 2018 Mar.

20.

Evaluating the effect of Clostridium difficile conditioned medium on fecal microbiota community structure.

Horvat S, Mahnic A, Breskvar M, Dzeroski S, Rupnik M.

Sci Rep. 2017 Nov 27;7(1):16448. doi: 10.1038/s41598-017-15434-1.

21.

Low overlap between carbapenem resistant Pseudomonas aeruginosa genotypes isolated from hospitalized patients and wastewater treatment plants.

Golle A, Janezic S, Rupnik M.

PLoS One. 2017 Oct 19;12(10):e0186736. doi: 10.1371/journal.pone.0186736. eCollection 2017.

22.

SNAP-25b-deficiency increases insulin secretion and changes spatiotemporal profile of Ca2+oscillations in β cell networks.

Daraio T, Bombek LK, Gosak M, Valladolid-Acebes I, Klemen MS, Refai E, Berggren PO, Brismar K, Rupnik MS, Bark C.

Sci Rep. 2017 Aug 10;7(1):7744. doi: 10.1038/s41598-017-08082-y.

23.

Highly Divergent Clostridium difficile Strains Isolated from the Environment.

Janezic S, Potocnik M, Zidaric V, Rupnik M.

PLoS One. 2016 Nov 23;11(11):e0167101. doi: 10.1371/journal.pone.0167101. eCollection 2016.

24.

Letter to Editor.

Rupnik M.

Anaerobe. 2016 Dec;42:205. doi: 10.1016/j.anaerobe.2016.09.010. Epub 2016 Nov 10. No abstract available.

PMID:
27839939
25.

Distribution of Clostridium difficile PCR ribotypes and high proportion of 027 and 176 in some hospitals in four South Eastern European countries.

Rupnik M, Tambic Andrasevic A, Trajkovska Dokic E, Matas I, Jovanovic M, Pasic S, Kocuvan A, Janezic S.

Anaerobe. 2016 Dec;42:142-144. doi: 10.1016/j.anaerobe.2016.10.005. Epub 2016 Oct 15.

PMID:
27751937
26.

Molecular characteristics of Clostridium difficile isolates from human and animals in the North Eastern region of India.

Hussain I, Borah P, Sharma RK, Rajkhowa S, Rupnik M, Saikia DP, Hasin D, Hussain I, Deka NK, Barkalita LM, Nishikawa Y, Ramamurthy T.

Mol Cell Probes. 2016 Oct;30(5):306-311. doi: 10.1016/j.mcp.2016.08.010. Epub 2016 Aug 26.

PMID:
27569848
27.

High prevalence of nontoxigenic Clostridium difficile isolated from hospitalized and non-hospitalized individuals in rural Ghana.

Janssen I, Cooper P, Gunka K, Rupnik M, Wetzel D, Zimmermann O, Groß U.

Int J Med Microbiol. 2016 Dec;306(8):652-656. doi: 10.1016/j.ijmm.2016.09.004. Epub 2016 Sep 24.

PMID:
27693000
28.

Single-cell analysis reveals IGF-1 potentiation of inhibition of the TGF-β/Smad pathway of fibrosis in human keratocytes in vitro.

Sarenac T, Trapecar M, Gradisnik L, Rupnik MS, Pahor D.

Sci Rep. 2016 Sep 30;6:34373. doi: 10.1038/srep34373.

29.

Polyester type polyHIPE scaffolds with an interconnected porous structure for cartilage regeneration.

Naranda J, Sušec M, Maver U, Gradišnik L, Gorenjak M, Vukasović A, Ivković A, Rupnik MS, Vogrin M, Krajnc P.

Sci Rep. 2016 Jun 24;6:28695. doi: 10.1038/srep28695.

30.

A MLST Clade 2 Clostridium difficile strain with a variant TcdB induces severe inflammatory and oxidative response associated with mucosal disruption.

Costa CL, López-Ureña D, de Oliveira Assis T, Ribeiro RA, Silva RO, Rupnik M, Wilcox MH, de Carvalho AF, do Carmo AO, Dias AA, de Carvalho CB, Chaves-Olarte E, Rodríguez C, Quesada-Gómez C, de Castro Brito GA.

Anaerobe. 2016 Aug;40:76-84. doi: 10.1016/j.anaerobe.2016.06.005. Epub 2016 Jun 14.

31.

Sporulation properties and antimicrobial susceptibility in endemic and rare Clostridium difficile PCR ribotypes.

Zidaric V, Rupnik M.

Anaerobe. 2016 Jun;39:183-8. doi: 10.1016/j.anaerobe.2016.04.010. Epub 2016 Apr 14.

PMID:
27095618
32.

Identification of risk factors influencing Clostridium difficile prevalence in middle-size dairy farms.

Bandelj P, Blagus R, Briski F, Frlic O, Vergles Rataj A, Rupnik M, Ocepek M, Vengust M.

Vet Res. 2016 Mar 12;47:41. doi: 10.1186/s13567-016-0326-0.

33.

Diversity of the microbiota involved in wine and organic apple cider submerged vinegar production as revealed by DHPLC analysis and next-generation sequencing.

Trček J, Mahnič A, Rupnik M.

Int J Food Microbiol. 2016 Apr 16;223:57-62. doi: 10.1016/j.ijfoodmicro.2016.02.007. Epub 2016 Feb 10.

PMID:
26897250
34.

Introduction to the special issue on Clostridium difficile and the history of the International Clostridium difficile Symposium (ICDS).

Rupnik M, Mastrantonio P.

Anaerobe. 2016 Feb;37:1-2. doi: 10.1016/j.anaerobe.2016.01.003. No abstract available.

PMID:
26856973
35.

The SOS Response Master Regulator LexA Is Associated with Sporulation, Motility and Biofilm Formation in Clostridium difficile.

Walter BM, Cartman ST, Minton NP, Butala M, Rupnik M.

PLoS One. 2015 Dec 18;10(12):e0144763. doi: 10.1371/journal.pone.0144763. eCollection 2015.

36.

Clostridium difficile ribotypes in humans and animals in Brazil.

Silva RO, Rupnik M, Diniz AN, Vilela EG, Lobato FC.

Mem Inst Oswaldo Cruz. 2015 Dec;110(8):1062-5. doi: 10.1590/0074-02760150294. Epub 2015 Dec 11.

37.

Membrane Potential and Calcium Dynamics in Beta Cells from Mouse Pancreas Tissue Slices: Theory, Experimentation, and Analysis.

Dolenšek J, Špelič D, Klemen MS, Žalik B, Gosak M, Rupnik MS, Stožer A.

Sensors (Basel). 2015 Oct 28;15(11):27393-419. doi: 10.3390/s151127393. Review.

38.

An Update on Clostridium difficile Toxinotyping.

Rupnik M, Janezic S.

J Clin Microbiol. 2016 Jan;54(1):13-8. doi: 10.1128/JCM.02083-15. Epub 2015 Oct 28. Review.

39.

Isolation and characterization of Clostridium difficile from pet dogs in Assam, India.

Hussain I, Sharma RK, Borah P, Rajkhowa S, Hussain I, Barkalita LM, Hasin D, Choudhury M, Rupnik M, Deka NK, Saikia GK.

Anaerobe. 2015 Dec;36:9-13. doi: 10.1016/j.anaerobe.2015.09.006. Epub 2015 Sep 21.

PMID:
26393292
40.

The relationship between node degree and dissipation rate in networks of diffusively coupled oscillators and its significance for pancreatic beta cells.

Gosak M, Stožer A, Markovič R, Dolenšek J, Marhl M, Rupnik MS, Perc M.

Chaos. 2015 Jul;25(7):073115. doi: 10.1063/1.4926673.

PMID:
26232966
41.

Survey of community-associated-methicillin-Resistant Staphylococcus aureus in Slovenia: identification of community-associated and livestock-associated clones.

Dermota U, Mueller-Premru M, Švent-Kučina N, Petrovič Ž, Ribič H, Rupnik M, Janežič S, Zdovc I, Grmek-Košnik I.

Int J Med Microbiol. 2015 Sep;305(6):505-10. doi: 10.1016/j.ijmm.2015.05.002. Epub 2015 May 27.

PMID:
26055648
42.

Structural similarities and differences between the human and the mouse pancreas.

Dolenšek J, Rupnik MS, Stožer A.

Islets. 2015;7(1):e1024405. doi: 10.1080/19382014.2015.1024405. Review.

43.

Toward a true bacteriotherapy for Clostridium difficile infection.

Rupnik M.

N Engl J Med. 2015 Apr 16;372(16):1566-8. doi: 10.1056/NEJMcibr1500270. No abstract available.

PMID:
25875262
44.

HUIEC, Human intestinal epithelial cell line with differentiated properties: process of isolation and characterisation.

Gradisnik L, Trapecar M, Rupnik MS, Velnar T.

Wien Klin Wochenschr. 2015 Dec;127 Suppl 5:S204-9. doi: 10.1007/s00508-015-0771-1. Epub 2015 Mar 28.

PMID:
25821058
45.

Characterization of pancreatic NMDA receptors as possible drug targets for diabetes treatment.

Marquard J, Otter S, Welters A, Stirban A, Fischer A, Eglinger J, Herebian D, Kletke O, Klemen MS, Stožer A, Wnendt S, Piemonti L, Köhler M, Ferrer J, Thorens B, Schliess F, Rupnik MS, Heise T, Berggren PO, Klöcker N, Meissner T, Mayatepek E, Eberhard D, Kragl M, Lammert E.

Nat Med. 2015 Apr;21(4):363-72. doi: 10.1038/nm.3822. Epub 2015 Mar 16.

PMID:
25774850
46.

Exploring ComQXPA quorum-sensing diversity and biocontrol potential of Bacillus spp. isolates from tomato rhizoplane.

Oslizlo A, Stefanic P, Vatovec S, Beigot Glaser S, Rupnik M, Mandic-Mulec I.

Microb Biotechnol. 2015 May;8(3):527-40. doi: 10.1111/1751-7915.12258. Epub 2015 Mar 10.

47.

Genomic diversity of Clostridium difficile strains.

Janezic S, Rupnik M.

Res Microbiol. 2015 May;166(4):353-60. doi: 10.1016/j.resmic.2015.02.002. Epub 2015 Feb 18. Review.

PMID:
25700631
48.

Platelet-rich plasma, especially when combined with a TGF-β inhibitor promotes proliferation, viability and myogenic differentiation of myoblasts in vitro.

Kelc R, Trapecar M, Gradisnik L, Rupnik MS, Vogrin M.

PLoS One. 2015 Feb 13;10(2):e0117302. doi: 10.1371/journal.pone.0117302. eCollection 2015.

49.

The Detection Rate of Enteric Viruses and Clostridium difficile in a Waste Water Treatment Plant Effluent.

Steyer A, Gutiérrez-Aguirre I, Rački N, Beigot Glaser S, Brajer Humar B, Stražar M, Škrjanc I, Poljšak-Prijatelj M, Ravnikar M, Rupnik M.

Food Environ Virol. 2015 Feb 7. [Epub ahead of print]

PMID:
25663146
50.

Progressive glucose stimulation of islet beta cells reveals a transition from segregated to integrated modular functional connectivity patterns.

Markovič R, Stožer A, Gosak M, Dolenšek J, Marhl M, Rupnik MS.

Sci Rep. 2015 Jan 19;5:7845. doi: 10.1038/srep07845.

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