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Items: 39

1.

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.

Metsky HC, Siddle KJ, Gladden-Young A, Qu J, Yang DK, Brehio P, Goldfarb A, Piantadosi A, Wohl S, Carter A, Lin AE, Barnes KG, Tully DC, Corleis B, Hennigan S, Barbosa-Lima G, Vieira YR, Paul LM, Tan AL, Garcia KF, Parham LA, Odia I, Eromon P, Folarin OA, Goba A; Viral Hemorrhagic Fever Consortium, Simon-Lorière E, Hensley L, Balmaseda A, Harris E, Kwon DS, Allen TM, Runstadler JA, Smole S, Bozza FA, Souza TML, Isern S, Michael SF, Lorenzana I, Gehrke L, Bosch I, Ebel G, Grant DS, Happi CT, Park DJ, Gnirke A, Sabeti PC, Matranga CB.

Nat Biotechnol. 2019 Feb;37(2):160-168. doi: 10.1038/s41587-018-0006-x. Epub 2019 Feb 4.

2.

Host-directed combinatorial RNAi improves inhibition of diverse strains of influenza A virus in human respiratory epithelial cells.

Estrin MA, Hussein ITM, Puryear WB, Kuan AC, Artim SC, Runstadler JA.

PLoS One. 2018 May 18;13(5):e0197246. doi: 10.1371/journal.pone.0197246. eCollection 2018.

3.

Environmental contaminant mixtures modulate in vitro influenza infection.

Desforges JP, Bandoro C, Shehata L, Sonne C, Dietz R, Puryear WB, Runstadler JA.

Sci Total Environ. 2018 Sep 1;634:20-28. doi: 10.1016/j.scitotenv.2018.03.321. Epub 2018 Apr 4.

PMID:
29626767
4.

Evaluating the use of stable isotope analysis to infer the feeding ecology of a growing US gray seal (Halichoerus grypus) population.

Lerner JE, Ono K, Hernandez KM, Runstadler JA, Puryear WB, Polito MJ.

PLoS One. 2018 Feb 21;13(2):e0192241. doi: 10.1371/journal.pone.0192241. eCollection 2018.

5.

Bacterial Lipopolysaccharide Destabilizes Influenza Viruses.

Bandoro C, Runstadler JA.

mSphere. 2017 Oct 11;2(5). pii: e00267-17. doi: 10.1128/mSphere.00267-17. eCollection 2017 Sep-Oct.

6.

Surveillance for highly pathogenic influenza A viruses in California during 2014-2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway.

Ramey AM, Hill NJ, Cline T, Plancarte M, De La Cruz S, Casazza ML, Ackerman JT, Fleskes JP, Vickers TW, Reeves AB, Gulland F, Fontaine C, Prosser DJ, Runstadler JA, Boyce WM.

Emerg Microbes Infect. 2017 Sep 6;6(9):e80. doi: 10.1038/emi.2017.66.

7.

Maintenance of influenza A viruses and antibody response in mallards (Anas platyrhynchos) sampled during the non-breeding season in Alaska.

Spivey TJ, Lindberg MS, Meixell BW, Smith KR, Puryear WB, Davis KR, Runstadler JA, Stallknecht DE, Ramey AM.

PLoS One. 2017 Aug 24;12(8):e0183505. doi: 10.1371/journal.pone.0183505. eCollection 2017.

8.

Detection of Wellfleet Bay Virus Antibodies in Sea Birds of the Northeastern USA.

Ballard JR, Mickley R, Brown JD, Hill NJ, Runstadler JA, Clark DE, Ellis JC, Mead DG, Fischer JR.

J Wildl Dis. 2017 Oct;53(4):875-879. doi: 10.7589/2016-10-237. Epub 2017 Jun 22.

PMID:
28640712
9.

Reassortment of Influenza A Viruses in Wild Birds in Alaska before H5 Clade 2.3.4.4 Outbreaks.

Hill NJ, Hussein IT, Davis KR, Ma EJ, Spivey TJ, Ramey AM, Puryear WB, Das SR, Halpin RA, Lin X, Fedorova NB, Suarez DL, Boyce WM, Runstadler JA.

Emerg Infect Dis. 2017 Apr;23(4):654-657. doi: 10.3201/eid2304.161668.

10.

Genetic characterization of H5N2 influenza viruses isolated from wild birds in Japan suggests multiple reassortment.

Sultan S, Bui VN, Hill NJ, Hussein IT, Trinh DQ, Inage K, Hashizume T, Runstadler JA, Ogawa H, Imai K.

Arch Virol. 2016 Dec;161(12):3309-3322. Epub 2016 Aug 30.

PMID:
27573808
11.

Detection, prevalence, and transmission of avian hematozoa in waterfowl at the Arctic/sub-Arctic interface: co-infections, viral interactions, and sources of variation.

Meixell BW, Arnold TW, Lindberg MS, Smith MM, Runstadler JA, Ramey AM.

Parasit Vectors. 2016 Jul 7;9(1):390. doi: 10.1186/s13071-016-1666-3.

12.

Transmission of influenza reflects seasonality of wild birds across the annual cycle.

Hill NJ, Ma EJ, Meixell BW, Lindberg MS, Boyce WM, Runstadler JA.

Ecol Lett. 2016 Aug;19(8):915-25. doi: 10.1111/ele.12629. Epub 2016 Jun 21.

PMID:
27324078
13.

A Bird's Eye View of Influenza A Virus Transmission: Challenges with Characterizing Both Sides of a Co-Evolutionary Dynamic.

Hill NJ, Runstadler JA.

Integr Comp Biol. 2016 Aug;56(2):304-16. doi: 10.1093/icb/icw055. Epub 2016 Jun 1. Review.

14.

Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential.

Bahl J, Pham TT, Hill NJ, Hussein IT, Ma EJ, Easterday BC, Halpin RA, Stockwell TB, Wentworth DE, Kayali G, Krauss S, Schultz-Cherry S, Webster RG, Webby RJ, Swartz MD, Smith GJ, Runstadler JA.

PLoS Pathog. 2016 May 11;12(5):e1005620. doi: 10.1371/journal.ppat.1005620. eCollection 2016 May.

15.

Reticulate evolution is favored in influenza niche switching.

Ma EJ, Hill NJ, Zabilansky J, Yuan K, Runstadler JA.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5335-9. doi: 10.1073/pnas.1522921113. Epub 2016 Apr 25.

16.

A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.

Hussein ITM, Ma EJ, Hill NJ, Meixell BW, Lindberg M, Albrecht RA, Bahl J, Runstadler JA.

Infect Genet Evol. 2016 Jul;41:279-288. doi: 10.1016/j.meegid.2016.04.011. Epub 2016 Apr 14.

17.

Hemagglutinin Receptor Binding of a Human Isolate of Influenza A(H10N8) Virus.

Ramos I, Mansour M, Wohlbold TJ, Ermler ME, Hirsh A, Runstadler JA, Fernandez-Sesma A, Krammer F.

Emerg Infect Dis. 2015 Jul;21(7):1197-201. doi: 10.3201/eid2107.141755.

18.

Genetic characterization of a rare H12N3 avian influenza virus isolated from a green-winged teal in Japan.

Bui VN, Ogawa H, Hussein IT, Hill NJ, Trinh DQ, AboElkhair M, Sultan S, Ma E, Saito K, Watanabe Y, Runstadler JA, Imai K.

Virus Genes. 2015 Apr;50(2):316-20. doi: 10.1007/s11262-014-1162-9. Epub 2015 Jan 4.

PMID:
25557930
19.

Evaluation of seabirds in Newfoundland and Labrador, Canada, as hosts of influenza A viruses.

Wille M, Huang Y, Robertson GJ, Ryan P, Wilhelm SI, Fifield D, Bond AL, Granter A, Munro H, Buxton R, Jones IL, Fitzsimmons MG, Burke C, Tranquilla LM, Rector M, Takahashi L, Kouwenberg AL, Storey A, Walsh C, Hedd A, Montevecchi WA, Runstadler JA, Ojkic D, Whitney H, Lang AS.

J Wildl Dis. 2014 Jan;50(1):98-103. doi: 10.7589/2012-10-247. Epub 2013 Oct 25.

PMID:
24171570
20.

Hemagglutinin stalk-based universal vaccine constructs protect against group 2 influenza A viruses.

Margine I, Krammer F, Hai R, Heaton NS, Tan GS, Andrews SA, Runstadler JA, Wilson PC, Albrecht RA, García-Sastre A, Palese P.

J Virol. 2013 Oct;87(19):10435-46. doi: 10.1128/JVI.01715-13. Epub 2013 Jul 31.

21.

Genome-wide association analysis identifies a mutation in the thiamine transporter 2 (SLC19A3) gene associated with Alaskan Husky encephalopathy.

Vernau KM, Runstadler JA, Brown EA, Cameron JM, Huson HJ, Higgins RJ, Ackerley C, Sturges BK, Dickinson PJ, Puschner B, Giulivi C, Shelton GD, Robinson BH, DiMauro S, Bollen AW, Bannasch DL.

PLoS One. 2013;8(3):e57195. doi: 10.1371/journal.pone.0057195. Epub 2013 Mar 4.

22.

Migration strategy affects avian influenza dynamics in mallards (Anas platyrhynchos).

Hill NJ, Takekawa JY, Ackerman JT, Hobson KA, Herring G, Cardona CJ, Runstadler JA, Boyce WM.

Mol Ecol. 2012 Dec;21(24):5986-99. doi: 10.1111/j.1365-294X.2012.05735.x. Epub 2012 Sep 13.

PMID:
22971007
23.

Genetic structure of Pacific Flyway avian influenza viruses is shaped by geographic location, host species, and sampling period.

Girard YA, Runstadler JA, Aldehoff F, Boyce W.

Virus Genes. 2012 Jun;44(3):415-28. doi: 10.1007/s11262-011-0706-5. Epub 2012 Jan 6.

PMID:
22222690
24.

Breed-specific ancestry studies and genome-wide association analysis highlight an association between the MYH9 gene and heat tolerance in Alaskan sprint racing sled dogs.

Huson HJ, vonHoldt BM, Rimbault M, Byers AM, Runstadler JA, Parker HG, Ostrander EA.

Mamm Genome. 2012 Feb;23(1-2):178-94. doi: 10.1007/s00335-011-9374-y. Epub 2011 Nov 22.

25.

Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective.

Hill NJ, Takekawa JY, Cardona CJ, Meixell BW, Ackerman JT, Runstadler JA, Boyce WM.

Vector Borne Zoonotic Dis. 2012 Mar;12(3):243-53. doi: 10.1089/vbz.2010.0246. Epub 2011 Oct 13.

26.

Interspecies transmission and limited persistence of low pathogenic avian influenza genomes among Alaska dabbling ducks.

Reeves AB, Pearce JM, Ramey AM, Meixell BW, Runstadler JA.

Infect Genet Evol. 2011 Dec;11(8):2004-10. doi: 10.1016/j.meegid.2011.09.011. Epub 2011 Sep 23.

PMID:
21964597
27.

Extensive geographic mosaicism in avian influenza viruses from gulls in the northern hemisphere.

Wille M, Robertson GJ, Whitney H, Bishop MA, Runstadler JA, Lang AS.

PLoS One. 2011;6(6):e20664. doi: 10.1371/journal.pone.0020664. Epub 2011 Jun 15.

28.

Interspecific exchange of avian influenza virus genes in Alaska: the influence of trans-hemispheric migratory tendency and breeding ground sympatry.

Pearce JM, Reeves AB, Ramey AM, Hupp JW, Ip HS, Bertram M, Petrula MJ, Scotton BD, Trust KA, Meixell BW, Runstadler JA.

Mol Ecol. 2011 Mar;20(5):1015-25. doi: 10.1111/j.1365-294X.2010.04908.x. Epub 2010 Nov 12.

29.

Surveillance of avian influenza virus in migratory water birds in eastern Hokkaido, Japan.

Bui VN, Ogawa H, Karibe K, Matsuo K, Nguyen TH, Awad SS, Minoungou GL, Xininigen, Saito K, Watanabe Y, Runstadler JA, Happ GM, Imai K.

J Vet Med Sci. 2011 Feb;73(2):209-15. Epub 2010 Oct 8.

30.

The evolutionary genetics and emergence of avian influenza viruses in wild birds.

Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK.

PLoS Pathog. 2008 May 30;4(5):e1000076. doi: 10.1371/journal.ppat.1000076.

31.

Prevalence and diversity of avian influenza viruses in environmental reservoirs.

Lang AS, Kelly A, Runstadler JA.

J Gen Virol. 2008 Feb;89(Pt 2):509-19. doi: 10.1099/vir.0.83369-0.

PMID:
18198382
32.

Using RRT-PCR analysis and virus isolation to determine the prevalence of avian influenza virus infections in ducks at Minto Flats State Game Refuge, Alaska, during August 2005.

Runstadler JA, Happ GM, Slemons RD, Sheng ZM, Gundlach N, Petrula M, Senne D, Nolting J, Evers DL, Modrell A, Huson H, Hills S, Rothe T, Marr T, Taubenberger JK.

Arch Virol. 2007;152(10):1901-10. Epub 2007 Jun 1.

33.
34.

Association of SLC11A1 (NRAMP1) with persistent oligoarticular and polyarticular rheumatoid factor-negative juvenile idiopathic arthritis in Finnish patients: haplotype analysis in Finnish families.

Runstadler JA, Säilä H, Savolainen A, Leirisalo-Repo M, Aho K, Tuomilehto-Wolf E, Tuomilehto J, Seldin MF.

Arthritis Rheum. 2005 Jan;52(1):247-56.

35.

HLA-DRB1, TAP2/TAP1, and HLA-DPB1 haplotypes in Finnish juvenile idiopathic arthritis: more complexity within the MHC.

Runstadler JA, Säilä H, Savolainen A, Leirisalo-Repo M, Aho K, Tuomilehto-Wolf E, Tuomilehto J, Seldin MF.

Genes Immun. 2004 Nov;5(7):562-71.

PMID:
15343265
36.

Analysis of MHC region genetics in Finnish patients with juvenile idiopathic arthritis: evidence for different locus-specific effects in polyarticular vs pauciarticular subsets and a shared DRB1 epitope.

Runstadler JA, Säilä H, Savolainen A, Leirisalo-Repo M, Aho K, Tuomilehto-Wolf E, Tuomilehto J, Seldin MF.

Genes Immun. 2003 Jul;4(5):326-35.

PMID:
12847547
37.

Obesity and elevated plasma leptin concentration in oMT1A-o growth hormone transgenic mice.

Oberbauer AM, Runstadler JA, Murray JD, Havel PJ.

Obes Res. 2001 Jan;9(1):51-8.

38.

A new antennapedia-class gene from the zebrafish.

Runstadler JA, Kocher TD.

Nucleic Acids Res. 1991 Oct 11;19(19):5434. No abstract available.

39.

Whose larvae?

Olson RR, Runstadler JA, Kocher TD.

Nature. 1991 May 30;351(6325):357-8. No abstract available.

PMID:
2034285

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