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Items: 1 to 50 of 64

1.

Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity.

López-Escardó D, Paps J, de Vargas C, Massana R, Ruiz-Trillo I, Del Campo J.

Sci Rep. 2018 Jun 14;8(1):9106. doi: 10.1038/s41598-018-27509-8.

2.

Decoupling of Nuclear Division Cycles and Cell Size during the Coenocytic Growth of the Ichthyosporean Sphaeroforma arctica.

Ondracka A, Dudin O, Ruiz-Trillo I.

Curr Biol. 2018 Jun 18;28(12):1964-1969.e2. doi: 10.1016/j.cub.2018.04.074. Epub 2018 Jun 7.

3.

Transfection of Capsaspora owczarzaki, a close unicellular relative of animals.

Parra-Acero H, Ros-Rocher N, Perez-Posada A, Kożyczkowska A, Sánchez-Pons N, Nakata A, Suga H, Najle SR, Ruiz-Trillo I.

Development. 2018 May 23;145(10). pii: dev162107. doi: 10.1242/dev.162107.

4.

Characterization of a group I Nme protein of Capsaspora owczarzaki-a close unicellular relative of animals.

Ćetković H, Bosnar MH, Perina D, Mikoč A, Deželjin M, Belužić R, Bilandžija H, Ruiz-Trillo I, Harcet M.

Lab Invest. 2018 Mar;98(3):304-314. doi: 10.1038/labinvest.2017.134. Epub 2018 Feb 5.

PMID:
29400699
5.

Capsaspora owczarzaki.

Ferrer-Bonet M, Ruiz-Trillo I.

Curr Biol. 2017 Sep 11;27(17):R829-R830. doi: 10.1016/j.cub.2017.05.074.

PMID:
28898640
6.

Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis.

López-Escardó D, Grau-Bové X, Guillaumet-Adkins A, Gut M, Sieracki ME, Ruiz-Trillo I.

Sci Rep. 2017 Sep 8;7(1):11025. doi: 10.1038/s41598-017-11466-9.

7.

Codon adaptation to tRNAs with Inosine modification at position 34 is widespread among Eukaryotes and present in two Bacterial phyla.

Rafels-Ybern À, Torres AG, Grau-Bove X, Ruiz-Trillo I, Ribas de Pouplana L.

RNA Biol. 2018;15(4-5):500-507. doi: 10.1080/15476286.2017.1358348. Epub 2017 Sep 26.

PMID:
28880718
8.

Parvularia atlantis gen. et sp. nov., a Nucleariid Filose Amoeba (Holomycota, Opisthokonta).

López-Escardó D, López-García P, Moreira D, Ruiz-Trillo I, Torruella G.

J Eukaryot Microbiol. 2018 Mar;65(2):170-179. doi: 10.1111/jeu.12450. Epub 2017 Aug 12.

PMID:
28741861
9.

Dynamics of genomic innovation in the unicellular ancestry of animals.

Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I.

Elife. 2017 Jul 20;6. pii: e26036. doi: 10.7554/eLife.26036.

10.

The origin of Metazoa: a unicellular perspective.

Sebé-Pedrós A, Degnan BM, Ruiz-Trillo I.

Nat Rev Genet. 2017 Aug;18(8):498-512. doi: 10.1038/nrg.2017.21. Epub 2017 May 8. Review.

PMID:
28479598
11.

Evolution and Classification of the T-Box Transcription Factor Family.

Sebé-Pedrós A, Ruiz-Trillo I.

Curr Top Dev Biol. 2017;122:1-26. doi: 10.1016/bs.ctdb.2016.06.004. Epub 2016 Jul 25. Review.

PMID:
28057261
12.

High-Throughput Proteomics Reveals the Unicellular Roots of Animal Phosphosignaling and Cell Differentiation.

Sebé-Pedrós A, Peña MI, Capella-Gutiérrez S, Antó M, Gabaldón T, Ruiz-Trillo I, Sabidó E.

Dev Cell. 2016 Oct 24;39(2):186-197. doi: 10.1016/j.devcel.2016.09.019. Epub 2016 Oct 13.

13.

Hidden diversity of Acoelomorpha revealed through metabarcoding.

Arroyo AS, López-Escardó D, de Vargas C, Ruiz-Trillo I.

Biol Lett. 2016 Sep;12(9). pii: 20160674.

14.

Sterol metabolism in the filasterean Capsaspora owczarzaki has features that resemble both fungi and animals.

Najle SR, Molina MC, Ruiz-Trillo I, Uttaro AD.

Open Biol. 2016 Jul;6(7). pii: 160029. doi: 10.1098/rsob.160029.

15.

Losing Complexity: The Role of Simplification in Macroevolution.

O'Malley MA, Wideman JG, Ruiz-Trillo I.

Trends Ecol Evol. 2016 Aug;31(8):608-621. doi: 10.1016/j.tree.2016.04.004. Epub 2016 May 19.

PMID:
27212432
16.

The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity.

Sebé-Pedrós A, Ballaré C, Parra-Acero H, Chiva C, Tena JJ, Sabidó E, Gómez-Skarmeta JL, Di Croce L, Ruiz-Trillo I.

Cell. 2016 May 19;165(5):1224-1237. doi: 10.1016/j.cell.2016.03.034. Epub 2016 Apr 21.

17.

Expression Atlas of the Deubiquitinating Enzymes in the Adult Mouse Retina, Their Evolutionary Diversification and Phenotypic Roles.

Esquerdo M, Grau-Bové X, Garanto A, Toulis V, Garcia-Monclús S, Millo E, López-Iniesta MJ, Abad-Morales V, Ruiz-Trillo I, Marfany G.

PLoS One. 2016 Mar 2;11(3):e0150364. doi: 10.1371/journal.pone.0150364. eCollection 2016.

18.

Sterol and genomic analyses validate the sponge biomarker hypothesis.

Gold DA, Grabenstatter J, de Mendoza A, Riesgo A, Ruiz-Trillo I, Summons RE.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2684-9. doi: 10.1073/pnas.1512614113. Epub 2016 Feb 22.

19.

Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals.

de Mendoza A, Suga H, Permanyer J, Irimia M, Ruiz-Trillo I.

Elife. 2015 Oct 14;4:e08904. doi: 10.7554/eLife.08904.

20.

Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi.

Torruella G, de Mendoza A, Grau-Bové X, Antó M, Chaplin MA, del Campo J, Eme L, Pérez-Cordón G, Whipps CM, Nichols KM, Paley R, Roger AJ, Sitjà-Bobadilla A, Donachie S, Ruiz-Trillo I.

Curr Biol. 2015 Sep 21;25(18):2404-10. doi: 10.1016/j.cub.2015.07.053. Epub 2015 Sep 10.

21.

Origin and evolution of lysyl oxidases.

Grau-Bové X, Ruiz-Trillo I, Rodriguez-Pascual F.

Sci Rep. 2015 May 29;5:10568. doi: 10.1038/srep10568.

22.

Tracing the Evolutionary History of Inositol, 1, 4, 5-Trisphosphate Receptor: Insights from Analyses of Capsaspora owczarzaki Ca2+ Release Channel Orthologs.

Alzayady KJ, Sebé-Pedrós A, Chandrasekhar R, Wang L, Ruiz-Trillo I, Yule DI.

Mol Biol Evol. 2015 Sep;32(9):2236-53. doi: 10.1093/molbev/msv098. Epub 2015 Apr 23.

23.

Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing.

Del Campo J, Mallo D, Massana R, de Vargas C, Richards TA, Ruiz-Trillo I.

Environ Microbiol. 2015 Sep;17(9):3195-207. doi: 10.1111/1462-2920.12759. Epub 2015 Feb 14.

24.

The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin.

Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I.

Mol Biol Evol. 2015 Mar;32(3):726-39. doi: 10.1093/molbev/msu334. Epub 2014 Dec 17.

25.

Forward genetics for back-in-time questions.

de Mendoza A, Ruiz-Trillo I.

Elife. 2014 Nov 4;3. doi: 10.7554/eLife.05218.

26.

The others: our biased perspective of eukaryotic genomes.

del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I.

Trends Ecol Evol. 2014 May;29(5):252-9. doi: 10.1016/j.tree.2014.03.006. Epub 2014 Apr 11.

27.

The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity.

de Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I.

Genome Biol Evol. 2014 Mar;6(3):606-19. doi: 10.1093/gbe/evu038.

28.

Evolution and classification of myosins, a paneukaryotic whole-genome approach.

Sebé-Pedrós A, Grau-Bové X, Richards TA, Ruiz-Trillo I.

Genome Biol Evol. 2014 Feb;6(2):290-305. doi: 10.1093/gbe/evu013.

29.

Regulated aggregative multicellularity in a close unicellular relative of metazoa.

Sebé-Pedrós A, Irimia M, Del Campo J, Parra-Acero H, Russ C, Nusbaum C, Blencowe BJ, Ruiz-Trillo I.

Elife. 2013 Dec 24;2:e01287. doi: 10.7554/eLife.01287.

30.

Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division.

Desvoyes B, de Mendoza A, Ruiz-Trillo I, Gutierrez C.

J Exp Bot. 2014 Jun;65(10):2657-66. doi: 10.1093/jxb/ert411. Epub 2013 Dec 9.

31.

Earliest Holozoan expansion of phosphotyrosine signaling.

Suga H, Torruella G, Burger G, Brown MW, Ruiz-Trillo I.

Mol Biol Evol. 2014 Mar;31(3):517-28. doi: 10.1093/molbev/mst241. Epub 2013 Dec 3.

32.

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

de Mendoza A, Sebé-Pedrós A, Šestak MS, Matejcic M, Torruella G, Domazet-Loso T, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4858-66. doi: 10.1073/pnas.1311818110. Epub 2013 Nov 25.

33.

Early evolution of the T-box transcription factor family.

Sebé-Pedrós A, Ariza-Cosano A, Weirauch MT, Leininger S, Yang A, Torruella G, Adamski M, Adamska M, Hughes TR, Gómez-Skarmeta JL, Ruiz-Trillo I.

Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16050-5. doi: 10.1073/pnas.1309748110. Epub 2013 Sep 16.

34.

The Capsaspora genome reveals a complex unicellular prehistory of animals.

Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, Haas BJ, Roger AJ, Nusbaum C, Ruiz-Trillo I.

Nat Commun. 2013;4:2325. doi: 10.1038/ncomms3325.

35.

A broad genomic survey reveals multiple origins and frequent losses in the evolution of respiratory hemerythrins and hemocyanins.

Martín-Durán JM, de Mendoza A, Sebé-Pedrós A, Ruiz-Trillo I, Hejnol A.

Genome Biol Evol. 2013;5(7):1435-42. doi: 10.1093/gbe/evt102.

36.

Insights into the origin of metazoan filopodia and microvilli.

Sebé-Pedrós A, Burkhardt P, Sánchez-Pons N, Fairclough SR, Lang BF, King N, Ruiz-Trillo I.

Mol Biol Evol. 2013 Sep;30(9):2013-23. doi: 10.1093/molbev/mst110. Epub 2013 Jun 14.

37.

A genomic survey of HECT ubiquitin ligases in eukaryotes reveals independent expansions of the HECT system in several lineages.

Grau-Bové X, Sebé-Pedrós A, Ruiz-Trillo I.

Genome Biol Evol. 2013;5(5):833-47. doi: 10.1093/gbe/evt052.

38.

Development of ichthyosporeans sheds light on the origin of metazoan multicellularity.

Suga H, Ruiz-Trillo I.

Dev Biol. 2013 May 1;377(1):284-92. doi: 10.1016/j.ydbio.2013.01.009. Epub 2013 Jan 18.

39.

Environmental survey meta-analysis reveals hidden diversity among unicellular opisthokonts.

del Campo J, Ruiz-Trillo I.

Mol Biol Evol. 2013 Apr;30(4):802-5. doi: 10.1093/molbev/mst006. Epub 2013 Jan 16.

40.

Molecular phylogeny of unikonts: new insights into the position of apusomonads and ancyromonads and the internal relationships of opisthokonts.

Paps J, Medina-Chacón LA, Marshall W, Suga H, Ruiz-Trillo I.

Protist. 2013 Jan;164(1):2-12. doi: 10.1016/j.protis.2012.09.002. Epub 2012 Oct 18.

41.

Lack of Csk-mediated negative regulation in a unicellular SRC kinase.

Schultheiss KP, Suga H, Ruiz-Trillo I, Miller WT.

Biochemistry. 2012 Oct 16;51(41):8267-77. doi: 10.1021/bi300965h. Epub 2012 Oct 1.

42.

Premetazoan origin of the hippo signaling pathway.

Sebé-Pedrós A, Zheng Y, Ruiz-Trillo I, Pan D.

Cell Rep. 2012 Jan 26;1(1):13-20. doi: 10.1016/j.celrep.2011.11.004. Epub 2011 Dec 15.

43.

Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases.

Suga H, Dacre M, de Mendoza A, Shalchian-Tabrizi K, Manning G, Ruiz-Trillo I.

Sci Signal. 2012 May 1;5(222):ra35. doi: 10.1126/scisignal.2002733.

44.

A genomic survey shows that the haloarchaeal type tyrosyl tRNA synthetase is not a synapomorphy of opisthokonts.

Shadwick JD, Ruiz-Trillo I.

Eur J Protistol. 2012 Jan;48(1):89-93. doi: 10.1016/j.ejop.2011.10.003. Epub 2011 Dec 29.

45.
46.

Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains.

Torruella G, Derelle R, Paps J, Lang BF, Roger AJ, Shalchian-Tabrizi K, Ruiz-Trillo I.

Mol Biol Evol. 2012 Feb;29(2):531-44. doi: 10.1093/molbev/msr185. Epub 2011 Jul 18.

47.

Phylogenomic evidence for a myxococcal contribution to the mitochondrial fatty acid beta-oxidation.

Schlüter A, Ruiz-Trillo I, Pujol A.

PLoS One. 2011;6(7):e21989. doi: 10.1371/journal.pone.0021989. Epub 2011 Jul 7.

48.

The mysterious evolutionary origin for the GNE gene and the root of bilateria.

de Mendoza A, Ruiz-Trillo I.

Mol Biol Evol. 2011 Nov;28(11):2987-91. doi: 10.1093/molbev/msr142. Epub 2011 May 25.

49.

Premetazoan ancestry of the Myc-Max network.

Young SL, Diolaiti D, Conacci-Sorrell M, Ruiz-Trillo I, Eisenman RN, King N.

Mol Biol Evol. 2011 Oct;28(10):2961-71. doi: 10.1093/molbev/msr132. Epub 2011 May 13.

50.

Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki.

Sebé-Pedrós A, de Mendoza A, Lang BF, Degnan BM, Ruiz-Trillo I.

Mol Biol Evol. 2011 Mar;28(3):1241-1254. doi: 10.1093/molbev/msq309. Epub 2010 Nov 17.

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