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Items: 39

1.

Yra1-bound RNA-DNA hybrids cause orientation-independent transcription-replication collisions and telomere instability.

García-Rubio M, Aguilera P, Lafuente-Barquero J, Ruiz JF, Simon MN, Geli V, Rondón AG, Aguilera A.

Genes Dev. 2018 Jul 1;32(13-14):965-977. doi: 10.1101/gad.311274.117. Epub 2018 Jun 28.

PMID:
29954833
2.

Polμ tumor variants decrease the efficiency and accuracy of NHEJ.

Sastre-Moreno G, Pryor JM, Díaz-Talavera A, Ruiz JF, Ramsden DA, Blanco L.

Nucleic Acids Res. 2017 Sep 29;45(17):10018-10031. doi: 10.1093/nar/gkx625.

3.

A new role for Rrm3 in repair of replication-born DNA breakage by sister chromatid recombination.

Muñoz-Galván S, García-Rubio M, Ortega P, Ruiz JF, Jimeno S, Pardo B, Gómez-González B, Aguilera A.

PLoS Genet. 2017 May 5;13(5):e1006781. doi: 10.1371/journal.pgen.1006781. eCollection 2017 May.

4.

Regulation of human polλ by ATM-mediated phosphorylation during non-homologous end joining.

Sastre-Moreno G, Pryor JM, Moreno-Oñate M, Herrero-Ruiz AM, Cortés-Ledesma F, Blanco L, Ramsden DA, Ruiz JF.

DNA Repair (Amst). 2017 Mar;51:31-45. doi: 10.1016/j.dnarep.2017.01.004. Epub 2017 Jan 17.

5.

Vibrations inside buildings due to subway railway traffic. Experimental validation of a comprehensive prediction model.

Lopes P, Ruiz JF, Alves Costa P, Medina Rodríguez L, Cardoso AS.

Sci Total Environ. 2016 Oct 15;568:1333-1343. doi: 10.1016/j.scitotenv.2015.11.016. Epub 2015 Nov 15.

PMID:
26589136
6.

The microbiome of uncontacted Amerindians.

Clemente JC, Pehrsson EC, Blaser MJ, Sandhu K, Gao Z, Wang B, Magris M, Hidalgo G, Contreras M, Noya-Alarcón Ó, Lander O, McDonald J, Cox M, Walter J, Oh PL, Ruiz JF, Rodriguez S, Shen N, Song SJ, Metcalf J, Knight R, Dantas G, Dominguez-Bello MG.

Sci Adv. 2015 Apr 3;1(3). pii: e1500183.

7.

Yeast pol4 promotes tel1-regulated chromosomal translocations.

Ruiz JF, Pardo B, Sastre-Moreno G, Aguilera A, Blanco L.

PLoS Genet. 2013;9(7):e1003656. doi: 10.1371/journal.pgen.1003656. Epub 2013 Jul 18.

8.

Structure requirements for anaerobe processing of azo compounds: implications for prodrug design.

Gavin J, Ruiz JF, Kedziora K, Windle H, Kelleher DP, Gilmer JF.

Bioorg Med Chem Lett. 2012 Dec 15;22(24):7647-52. doi: 10.1016/j.bmcl.2012.10.014. Epub 2012 Oct 11.

PMID:
23122822
9.

A double prodrug system for colon targeting of benzenesulfonamide COX-2 inhibitors.

Ruiz JF, Kedziora K, Keogh B, Maguire J, Reilly M, Windle H, Kelleher DP, Gilmer JF.

Bioorg Med Chem Lett. 2011 Nov 15;21(22):6636-40. doi: 10.1016/j.bmcl.2011.09.071. Epub 2011 Sep 22.

PMID:
21983446
10.

Genetic and molecular analysis of mitotic recombination in Saccharomyces cerevisiae.

Gómez-González B, Ruiz JF, Aguilera A.

Methods Mol Biol. 2011;745:151-72. doi: 10.1007/978-1-61779-129-1_10.

PMID:
21660694
11.

Investigation into drug release from colon-specific azoreductase-activated steroid prodrugs using in-vitro models.

Ruiz JF, Kedziora K, Windle H, Kelleher DP, Gilmer JF.

J Pharm Pharmacol. 2011 Jun;63(6):806-16. doi: 10.1111/j.2042-7158.2011.01289.x. Epub 2011 May 3.

PMID:
21585379
12.

AID induces double-strand breaks at immunoglobulin switch regions and c-MYC causing chromosomal translocations in yeast THO mutants.

Ruiz JF, Gómez-González B, Aguilera A.

PLoS Genet. 2011 Feb;7(2):e1002009. doi: 10.1371/journal.pgen.1002009. Epub 2011 Feb 24.

13.

Lineage divergence detected in the malaria vector Anopheles marajoara (Diptera: Culicidae) in Amazonian Brazil.

McKeon SN, Lehr MA, Wilkerson RC, Ruiz JF, Sallum MA, Lima JB, Povoa MM, Conn JE.

Malar J. 2010 Oct 7;9:271. doi: 10.1186/1475-2875-9-271.

14.

Chromosomal translocations caused by either pol32-dependent or pol32-independent triparental break-induced replication.

Ruiz JF, Gómez-González B, Aguilera A.

Mol Cell Biol. 2009 Oct;29(20):5441-54. doi: 10.1128/MCB.00256-09. Epub 2009 Aug 3.

15.

Relationship between coffee cultivation practices in Colombia and exposure to infection with Leishmania.

Alexander B, Agudelo LA, Navarro JF, Ruiz JF, Molina J, Aguilera G, Klein A, Quiñones ML.

Trans R Soc Trop Med Hyg. 2009 Dec;103(12):1263-8. doi: 10.1016/j.trstmh.2009.04.018. Epub 2009 Jun 24.

PMID:
19555985
16.

Design, synthesis, and pharmacological effects of a cyclization-activated steroid prodrug for colon targeting in inflammatory bowel disease.

Ruiz JF, Radics G, Windle H, Serra HO, Simplício AL, Kedziora K, Fallon PG, Kelleher DP, Gilmer JF.

J Med Chem. 2009 May 28;52(10):3205-11. doi: 10.1021/jm8016317.

PMID:
19397323
17.

Computer-aided screening mammography.

Ruiz JF.

N Engl J Med. 2007 Jul 5;357(1):84; author reply 85. No abstract available.

PMID:
17615629
18.

A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis.

Juárez R, Ruiz JF, Nick McElhinny SA, Ramsden D, Blanco L.

Nucleic Acids Res. 2006;34(16):4572-82. Epub 2006 Sep 8.

19.

Atrial septal defect: anatomoechocardiographic correlation.

Muñóz-Castellanos L, Espinola-Zavaleta N, Kuri-Nivón M, Ruíz JF, Keirns C.

J Am Soc Echocardiogr. 2006 Sep;19(9):1182-9.

PMID:
16950475
20.

Small bowel obstruction complicating pregnancy after laparoscopic gastric bypass.

Bellanger DE, Ruiz JF, Solar K.

Surg Obes Relat Dis. 2006 Jul-Aug;2(4):490-2. No abstract available.

PMID:
16925388
21.

Characterization of SpPol4, a unique X-family DNA polymerase in Schizosaccharomyces pombe.

González-Barrera S, Sánchez A, Ruiz JF, Juárez R, Picher AJ, Terrados G, Andrade P, Blanco L.

Nucleic Acids Res. 2005 Aug 24;33(15):4762-74. Print 2005.

22.

Polymerase mu is up-regulated during the T cell-dependent immune response and its deficiency alters developmental dynamics of spleen centroblasts.

Lucas D, Laín de Lera T, González MA, Ruiz JF, Domínguez O, Casanova JC, Martínez-A C, Blanco L, Bernad A.

Eur J Immunol. 2005 May;35(5):1601-11.

23.

Overexpression of human DNA polymerase mu (Pol mu) in a Burkitt's lymphoma cell line affects the somatic hypermutation rate.

Ruiz JF, Lucas D, García-Palomero E, Saez AI, González MA, Piris MA, Bernad A, Blanco L.

Nucleic Acids Res. 2004 Nov 1;32(19):5861-73. Print 2004.

24.

Identification and characterization of a very low density lipoprotein receptor-binding peptide from tissue factor pathway inhibitor that has antitumor and antiangiogenic activity.

Hembrough TA, Ruiz JF, Swerdlow BM, Swartz GM, Hammers HJ, Zhang L, Plum SM, Williams MS, Strickland DK, Pribluda VS.

Blood. 2004 May 1;103(9):3374-80. Epub 2004 Jan 22.

25.

False positive mammograms and detection controlled estimation.

Kleit AN, Ruiz JF.

Health Serv Res. 2003 Aug;38(4):1207-28.

26.

Lack of sugar discrimination by human Pol mu requires a single glycine residue.

Ruiz JF, Juárez R, García-Díaz M, Terrados G, Picher AJ, González-Barrera S, Fernández de Henestrosa AR, Blanco L.

Nucleic Acids Res. 2003 Aug 1;31(15):4441-9.

27.

Are there mutator polymerases?

García-Díaz M, Ruiz JF, Juárez R, Terrados G, Blanco L.

ScientificWorldJournal. 2003 May 28;3:422-31. Review.

28.

DNA polymerase lambda, a novel DNA repair enzyme in human cells.

García-Díaz M, Bebenek K, Sabariegos R, Domínguez O, Rodríguez J, Kirchhoff T, García-Palomero E, Picher AJ, Juárez R, Ruiz JF, Kunkel TA, Blanco L.

J Biol Chem. 2002 Apr 12;277(15):13184-91. Epub 2002 Jan 30.

29.

Recognition of alpha 2-macroglobulin by the low density lipoprotein receptor-related protein requires the cooperation of two ligand binding cluster regions.

Mikhailenko I, Battey FD, Migliorini M, Ruiz JF, Argraves K, Moayeri M, Strickland DK.

J Biol Chem. 2001 Oct 19;276(42):39484-91. Epub 2001 Aug 15.

30.

The low density lipoprotein receptor-related protein modulates levels of matrix metalloproteinase 9 (MMP-9) by mediating its cellular catabolism.

Hahn-Dantona E, Ruiz JF, Bornstein P, Strickland DK.

J Biol Chem. 2001 May 4;276(18):15498-503. Epub 2001 Feb 2.

31.

Tissue factor pathway inhibitor inhibits endothelial cell proliferation via association with the very low density lipoprotein receptor.

Hembrough TA, Ruiz JF, Papathanassiu AE, Green SJ, Strickland DK.

J Biol Chem. 2001 Apr 13;276(15):12241-8. Epub 2001 Jan 17.

32.

DNA polymerase mu, a candidate hypermutase?

Ruiz JF, Domínguez O, Laín de Lera T, Garcia-Díaz M, Bernad A, Blanco L.

Philos Trans R Soc Lond B Biol Sci. 2001 Jan 29;356(1405):99-109. Review.

33.

DNA polymerase lambda (Pol lambda), a novel eukaryotic DNA polymerase with a potential role in meiosis.

García-Díaz M, Domínguez O, López-Fernández LA, de Lera LT, Saníger ML, Ruiz JF, Párraga M, García-Ortiz MJ, Kirchhoff T, del Mazo J, Bernad A, Blanco L.

J Mol Biol. 2000 Aug 25;301(4):851-67.

PMID:
10966791
34.

The reliability issue of computer-aided breast cancer diagnosis.

Kovalerchuk B, Triantaphyllou E, Ruiz JF, Torvik VI, Vityaev E.

Comput Biomed Res. 2000 Aug;33(4):296-313.

PMID:
10944406
35.

Consistent knowledge discovery in medical diagnosis.

Kovalerchuk B, Vityaev E, Ruiz JF.

IEEE Eng Med Biol Mag. 2000 Jul-Aug;19(4):26-37. No abstract available.

PMID:
10916730
36.

DNA polymerase mu (Pol mu), homologous to TdT, could act as a DNA mutator in eukaryotic cells.

Domínguez O, Ruiz JF, Laín de Lera T, García-Díaz M, González MA, Kirchhoff T, Martínez-A C, Bernad A, Blanco L.

EMBO J. 2000 Apr 3;19(7):1731-42.

37.

Insulin-mediated stimulation of ChAT and c-Jun in the developing retina neurons involves PI 3-kinase.

Hausman RE, Ren Y, Ruiz JF, Shah BH.

Biochem Soc Trans. 1998 Nov;26(4):S312. No abstract available.

PMID:
10047826
38.

Fuzzy logic in computer-aided breast cancer diagnosis: analysis of lobulation.

Kovalerchuk B, Triantaphyllou E, Ruiz JF, Clayton J.

Artif Intell Med. 1997 Sep;11(1):75-85.

PMID:
9267592
39.

[COMPOSITION AND ASSIMILATION OF BEEF FATS IN BRAZIL. I. STUDY OF ASSIMILATION IN HUMAN SERUM].

LASZLO H, CASTELOBRANCO YP, RUIZ JF, VALLE RP.

Hospital (Rio J). 1964 Jul;66:59-78. Portuguese. No abstract available.

PMID:
14181576

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