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Items: 25


Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis.

Lindström NO, De Sena Brandine G, Tran T, Ransick A, Suh G, Guo J, Kim AD, Parvez RK, Ruffins SW, Rutledge EA, Thornton ME, Grubbs B, McMahon JA, Smith AD, McMahon AP.

Dev Cell. 2018 Jun 4;45(5):651-660.e4. doi: 10.1016/j.devcel.2018.05.010.


Conserved and Divergent Features of Human and Mouse Kidney Organogenesis.

Lindström NO, McMahon JA, Guo J, Tran T, Guo Q, Rutledge E, Parvez RK, Saribekyan G, Schuler RE, Liao C, Kim AD, Abdelhalim A, Ruffins SW, Thornton ME, Baskin L, Grubbs B, Kesselman C, McMahon AP.

J Am Soc Nephrol. 2018 Mar;29(3):785-805. doi: 10.1681/ASN.2017080887. Epub 2018 Feb 15.


Bifunctional ectodermal stem cells around the nail display dual fate homeostasis and adaptive wounding response toward nail regeneration.

Leung Y, Kandyba E, Chen YB, Ruffins S, Chuong CM, Kobielak K.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15114-9. doi: 10.1073/pnas.1318848111. Epub 2014 Oct 2.


Label retaining cells (LRCs) with myoepithelial characteristic from the proximal acinar region define stem cells in the sweat gland.

Leung Y, Kandyba E, Chen YB, Ruffins S, Kobielak K.

PLoS One. 2013 Sep 18;8(9):e74174. doi: 10.1371/journal.pone.0074174. eCollection 2013.


High-resolution, three-dimensional mapping of gene expression using GeneExpressMap (GEM).

Flynn CJ, Sharma T, Ruffins SW, Guerra SL, Crowley JC, Ettensohn CA.

Dev Biol. 2011 Sep 15;357(2):532-40. doi: 10.1016/j.ydbio.2011.06.033. Epub 2011 Jun 29.


Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

Helmer KG, Ambite JL, Ames J, Ananthakrishnan R, Burns G, Chervenak AL, Foster I, Liming L, Keator D, Macciardi F, Madduri R, Navarro JP, Potkin S, Rosen B, Ruffins S, Schuler R, Turner JA, Toga A, Williams C, Kesselman C; Biomedical Informatics Research Network.

J Am Med Inform Assoc. 2011 Jul-Aug;18(4):416-22. doi: 10.1136/amiajnl-2010-000032. Epub 2011 Apr 22.


MRI in developmental biology and the construction of developmental atlases.

Ruffins SW, Jacobs RE.

Cold Spring Harb Protoc. 2011 Mar 1;2011(3):top100. doi: 10.1101/pdb.top100. No abstract available.


Digital atlasing and standardization in the mouse brain.

Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, Boline J.

PLoS Comput Biol. 2011 Feb 3;7(2):e1001065. doi: 10.1371/journal.pcbi.1001065. No abstract available. Erratum in: PLoS Comput Biol. 2011 Feb;7(2). doi: 10.1371/annotation/22c5808a-56cf-46e5-ba1b-456e838a5428. Larsen, Stephen D [corrected to Larson, Stephen D].


MBAT: a scalable informatics system for unifying digital atlasing workflows.

Lee D, Ruffins S, Ng Q, Sane N, Anderson S, Toga A.

BMC Bioinformatics. 2010 Dec 22;11:608. doi: 10.1186/1471-2105-11-608.


Digital three-dimensional atlas of quail development using high-resolution MRI.

Ruffins SW, Martin M, Keough L, Truong S, Fraser SE, Jacobs RE, Lansford R.

ScientificWorldJournal. 2007 May 11;7:592-604.


Small bilaterian fossils from 40 to 55 million years before the cambrian.

Chen JY, Bottjer DJ, Oliveri P, Dornbos SQ, Gao F, Ruffins S, Chi H, Li CW, Davidson EH.

Science. 2004 Jul 9;305(5681):218-22. Epub 2004 Jun 3.


A multimodal, multidimensional atlas of the C57BL/6J mouse brain.

MacKenzie-Graham A, Lee EF, Dinov ID, Bota M, Shattuck DW, Ruffins S, Yuan H, Konstantinidis F, Pitiot A, Ding Y, Hu G, Jacobs RE, Toga AW.

J Anat. 2004 Feb;204(2):93-102.


Superiority of 3D wavelet-packet denoising in MR microscopy.

Ghugre NR, Martin M, Scadeng M, Ruffins S, Hiltner T, Pautler R, Waters C, Readhead C, Jacobs R, Wood JC.

Magn Reson Imaging. 2003 Oct;21(8):913-21.


MRI: volumetric imaging for vital imaging and atlas construction.

Jacobs RE, Papan C, Ruffins S, Tyszka JM, Fraser SE.

Nat Rev Mol Cell Biol. 2003 Sep;Suppl:SS10-6. Review. No abstract available.


Towards a Tralfamadorian view of the embryo: multidimensional imaging of development.

Ruffins SW, Jacobs RE, Fraser SE.

Curr Opin Neurobiol. 2002 Oct;12(5):580-6. Review.


Three-dimensional digital mouse atlas using high-resolution MRI.

Dhenain M, Ruffins SW, Jacobs RE.

Dev Biol. 2001 Apr 15;232(2):458-70.


A critical period for conversion of ectodermal cells to a neural crest fate.

Ruffins S, Bronner-Fraser M.

Dev Biol. 2000 Feb 1;218(1):13-20.


Early migrating neural crest cells can form ventral neural tube derivatives when challenged by transplantation.

Ruffins S, Artinger KB, Bronner-Fraser M.

Dev Biol. 1998 Nov 15;203(2):295-304.


Dorsal hindbrain ablation results in rerouting of neural crest migration and changes in gene expression, but normal hyoid development.

Saldivar JR, Sechrist JW, Krull CE, Ruffins S, Bronner-Fraser M.

Development. 1997 Jul;124(14):2729-39.


A clonal analysis of secondary mesenchyme cell fates in the sea urchin embryo.

Ruffins SW, Ettensohn CA.

Dev Biol. 1993 Nov;160(1):285-8.


Object relations in childhood and adolescence: the development of working representations.

Westen D, Klepser J, Ruffins SA, Silverman M, Lifton N, Boekamp J.

J Consult Clin Psychol. 1991 Jun;59(3):400-9.


Object relations in borderline adolescents.

Westen D, Ludolph P, Lerner H, Ruffins S, Wiss FC.

J Am Acad Child Adolesc Psychiatry. 1990 May;29(3):338-48.


Physical and sexual abuse in adolescent girls with borderline personality disorder.

Westen D, Ludolph P, Misle B, Ruffins S, Block J.

Am J Orthopsychiatry. 1990 Jan;60(1):55-66.


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