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Items: 1 to 50 of 172

1.

Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer.

Wilson MD, Renault L, Maskell DP, Ghoneim M, Pye VE, Nans A, Rueda DS, Cherepanov P, Costa A.

Nat Commun. 2019 Sep 13;10(1):4189. doi: 10.1038/s41467-019-12007-w.

PMID:
31519882
2.

High-sensitivity microsatellite instability assessment for the detection of mismatch repair defects in normal tissue of biallelic germline mismatch repair mutation carriers.

González-Acosta M, Marín F, Puliafito B, Bonifaci N, Fernández A, Navarro M, Salvador H, Balaguer F, Iglesias S, Velasco A, Grau Garces E, Moreno V, Gonzalez-Granado LI, Guerra-García P, Ayala R, Florkin B, Kratz C, Ripperger T, Rosenbaum T, Januszkiewicz-Lewandowska D, Azizi AA, Ragab I, Nathrath M, Pander HJ, Lobitz S, Suerink M, Dahan K, Imschweiler T, Demirsoy U, Brunet J, Lázaro C, Rueda D, Wimmer K, Capellá G, Pineda M.

J Med Genet. 2019 Sep 7. pii: jmedgenet-2019-106272. doi: 10.1136/jmedgenet-2019-106272. [Epub ahead of print]

3.

Selective deployment of transcription factor paralogs with submaximal strength facilitates gene regulation in the immune system.

Bruno L, Ramlall V, Studer RA, Sauer S, Bradley D, Dharmalingam G, Carroll T, Ghoneim M, Chopin M, Nutt SL, Elderkin S, Rueda DS, Fisher AG, Siggers T, Beltrao P, Merkenschlager M.

Nat Immunol. 2019 Aug 26. doi: 10.1038/s41590-019-0471-5. [Epub ahead of print]

PMID:
31451789
4.

Cimp-Positive Status is More Representative in Multiple Colorectal Cancers than in Unique Primary Colorectal Cancers.

Tapial S, Olmedillas-López S, Rueda D, Arriba M, García JL, Vivas A, Pérez J, Pena-Couso L, Olivera R, Rodríguez Y, García-Arranz M, García-Olmo D, González-Sarmiento R, Urioste M, Goel A, Perea J.

Sci Rep. 2019 Jul 19;9(1):10516. doi: 10.1038/s41598-019-47014-w.

5.

Contribution of New Adenomatous Polyposis Predisposition Genes in an Unexplained Attenuated Spanish Cohort by Multigene Panel Testing.

Lorca V, Rueda D, Martín-Morales L, Fernández-Aceñero MJ, Grolleman J, Poves C, Llovet P, Tapial S, García-Barberán V, Sanz J, Pérez-Segura P, de Voer RM, Díaz-Rubio E, de la Hoya M, Caldés T, Garre P.

Sci Rep. 2019 Jul 8;9(1):9814. doi: 10.1038/s41598-019-46403-5.

6.

Emphysematous cystitis in an 87 year old man.

Rueda DA, Yannone IJ, Carrozza DA, Finocchietto P, Di Fonzo H.

Rev Fac Cien Med Univ Nac Cordoba. 2019 Jun 19;76(2):131-132. doi: 10.31053/1853.0605.v76.n2.21680. Spanish.

PMID:
31216170
7.

An alternative approach to establishing unbiased colorectal cancer risk estimation in Lynch syndrome.

Suerink M, Rodríguez-Girondo M, van der Klift HM, Colas C, Brugieres L, Lavoine N, Jongmans M, Munar GC, Evans DG, Farrell MP, Genuardi M, Goldberg Y, Gomez-Garcia E, Heinimann K, Hoell JI, Aretz S, Jasperson KW, Kedar I, Modi MB, Nikolaev S, van Os TAM, Ripperger T, Rueda D, Senter L, Sjursen W, Sunde L, Therkildsen C, Tibiletti MG, Trainer AH, Vos YJ, Wagner A, Winship I, Wimmer K, Zimmermann SY, Vasen HF, van Asperen CJ, Houwing-Duistermaat JJ, Ten Broeke SW, Nielsen M.

Genet Med. 2019 Jun 17. doi: 10.1038/s41436-019-0577-z. [Epub ahead of print]

PMID:
31204389
8.

Intermediate-onset colorectal cancer: A clinical and familial boundary between both early and late-onset colorectal cancer.

Arriba M, Sánchez C, Vivas A, Nutu OA, Rueda D, Tapial S, Rodríguez Y, Brandáriz L, García JL, García-Olmo D, Goel A, González-Sarmiento R, Urioste M, Perea J.

PLoS One. 2019 May 16;14(5):e0216472. doi: 10.1371/journal.pone.0216472. eCollection 2019.

9.

Clinical and Molecular Comparative Study of Colorectal Cancer Based on Age-of-onset and Tumor Location: Two Main Criteria for Subclassifying Colorectal Cancer.

Álvaro E, Cano JM, García JL, Brandáriz L, Olmedillas-López S, Arriba M, Rueda D, Rodríguez Y, Cañete Á, Arribas J, Inglada-Pérez L, Pérez J, Gómez C, García-Arranz M, García-Olmo D, Goel A, Urioste M, González-Sarmiento R, Perea J.

Int J Mol Sci. 2019 Feb 22;20(4). pii: E968. doi: 10.3390/ijms20040968.

10.

DNA stretching induces Cas9 off-target activity.

Newton MD, Taylor BJ, Driessen RPC, Roos L, Cvetesic N, Allyjaun S, Lenhard B, Cuomo ME, Rueda DS.

Nat Struct Mol Biol. 2019 Mar;26(3):185-192. doi: 10.1038/s41594-019-0188-z. Epub 2019 Feb 25.

11.

A sensitive and scalable microsatellite instability assay to diagnose constitutional mismatch repair deficiency by sequencing of peripheral blood leukocytes.

Gallon R, Mühlegger B, Wenzel SS, Sheth H, Hayes C, Aretz S, Dahan K, Foulkes W, Kratz CP, Ripperger T, Azizi AA, Baris Feldman H, Chong AL, Demirsoy U, Florkin B, Imschweiler T, Januszkiewicz-Lewandowska D, Lobitz S, Nathrath M, Pander HJ, Perez-Alonso V, Perne C, Ragab I, Rosenbaum T, Rueda D, Seidel MG, Suerink M, Taeubner J, Zimmermann SY, Zschocke J, Borthwick GM, Burn J, Jackson MS, Santibanez-Koref M, Wimmer K.

Hum Mutat. 2019 May;40(5):649-655. doi: 10.1002/humu.23721. Epub 2019 Mar 6.

12.

Giant tortoise genomes provide insights into longevity and age-related disease.

Quesada V, Freitas-Rodríguez S, Miller J, Pérez-Silva JG, Jiang ZF, Tapia W, Santiago-Fernández O, Campos-Iglesias D, Kuderna LFK, Quinzin M, Álvarez MG, Carrero D, Beheregaray LB, Gibbs JP, Chiari Y, Glaberman S, Ciofi C, Araujo-Voces M, Mayoral P, Arango JR, Tamargo-Gómez I, Roiz-Valle D, Pascual-Torner M, Evans BR, Edwards DL, Garrick RC, Russello MA, Poulakakis N, Gaughran SJ, Rueda DO, Bretones G, Marquès-Bonet T, White KP, Caccone A, López-Otín C.

Nat Ecol Evol. 2019 Jan;3(1):87-95. doi: 10.1038/s41559-018-0733-x. Epub 2018 Dec 3.

13.

Optimal molecular crowding accelerates group II intron folding and maximizes catalysis.

Paudel BP, Fiorini E, Börner R, Sigel RKO, Rueda DS.

Proc Natl Acad Sci U S A. 2018 Nov 20;115(47):11917-11922. doi: 10.1073/pnas.1806685115. Epub 2018 Nov 5.

14.

Reduced structural flexibility for an exonuclease deficient DNA polymerase III mutant.

Gahlon HL, Walker AR, Cisneros GA, Lamers MH, Rueda DS.

Phys Chem Chem Phys. 2018 Oct 31;20(42):26892-26902. doi: 10.1039/c8cp04112a.

15.

Structure and dynamics of the yeast SWR1-nucleosome complex.

Willhoft O, Ghoneim M, Lin CL, Chua EYD, Wilkinson M, Chaban Y, Ayala R, McCormack EA, Ocloo L, Rueda DS, Wigley DB.

Science. 2018 Oct 12;362(6411). pii: eaat7716. doi: 10.1126/science.aat7716.

16.

Primary constitutional MLH1 epimutations: a focal epigenetic event.

Dámaso E, Castillejo A, Arias MDM, Canet-Hermida J, Navarro M, Del Valle J, Campos O, Fernández A, Marín F, Turchetti D, García-Díaz JD, Lázaro C, Genuardi M, Rueda D, Alonso Á, Soto JL, Hitchins M, Pineda M, Capellá G.

Br J Cancer. 2018 Oct;119(8):978-987. doi: 10.1038/s41416-018-0019-8. Epub 2018 Oct 4.

17.

A novel inexpensive electrochemical sensor for pyrazinoic acid as a potential tool for the identification of pyrazinamide-resistant Mycobacterium tuberculosis.

Rueda D, Furukawa R, Fuentes P, Comina G, Rey De Castro NG, Requena D, Gilman RH, Sheen P, Zimic M.

Int J Mycobacteriol. 2018 Jul-Sep;7(3):275-281. doi: 10.4103/ijmy.ijmy_63_18.

18.

Agranulocytosis Induced by Vancomycin. Case Report and Literature Review.

di Fonzo H, Villegas Gutsch M, Castroagudin A, Cabrera MV, Mazzei ME, Rueda D.

Am J Case Rep. 2018 Sep 3;19:1053-1056. doi: 10.12659/AJCR.909956. Review.

19.

Redefining synchronous colorectal cancers based on tumor clonality.

Perea J, García JL, Corchete L, Lumbreras E, Arriba M, Rueda D, Tapial S, Pérez J, Vieiro V, Rodríguez Y, Brandáriz L, García-Arranz M, García-Olmo D, Goel A, Urioste M, Sarmiento RG.

Int J Cancer. 2019 Apr 1;144(7):1596-1608. doi: 10.1002/ijc.31761. Epub 2018 Oct 16.

PMID:
30151896
20.

No Overt Clinical Immunodeficiency Despite Immune Biological Abnormalities in Patients With Constitutional Mismatch Repair Deficiency.

Tesch VK, IJspeert H, Raicht A, Rueda D, Dominguez-Pinilla N, Allende LM, Colas C, Rosenbaum T, Ilencikova D, Baris HN, Nathrath MHM, Suerink M, Januszkiewicz-Lewandowska D, Ragab I, Azizi AA, Wenzel SS, Zschocke J, Schwinger W, Kloor M, Blattmann C, Brugieres L, van der Burg M, Wimmer K, Seidel MG.

Front Immunol. 2018 Jul 2;9:1506. doi: 10.3389/fimmu.2018.01506. eCollection 2018.

21.

Genome-Wide Assessment of Diversity and Divergence Among Extant Galapagos Giant Tortoise Species.

Miller JM, Quinzin MC, Edwards DL, Eaton DAR, Jensen EL, Russello MA, Gibbs JP, Tapia W, Rueda D, Caccone A.

J Hered. 2018 Aug 24;109(6):611-619. doi: 10.1093/jhered/esy031.

PMID:
29986032
22.

Differential clinicopathological and molecular features within late-onset colorectal cancer according to tumor location.

Brandariz L, Arriba M, García JL, Cano JM, Rueda D, Rubio E, Rodríguez Y, Pérez J, Vivas A, Sánchez C, Tapial S, Pena L, García-Arranz M, García-Olmo D, Urioste M, González-Sarmiento R, Perea J.

Oncotarget. 2018 Feb 15;9(20):15302-15311. doi: 10.18632/oncotarget.24502. eCollection 2018 Mar 16.

23.

Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing.

Rudan M, Bou Dib P, Musa M, Kanunnikau M, Sobočanec S, Rueda D, Warnecke T, Kriško A.

Elife. 2018 Mar 23;7. pii: e35330. doi: 10.7554/eLife.35330.

24.

Author Correction: Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provides Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2018 Mar 12;8(1):4568. doi: 10.1038/s41598-018-22519-y.

25.

Estimation of pyrazinamidase activity using a cell-free In vitro synthesis of pnca and its association with pyrazinamide susceptibility in Mycobacterium tuberculosis.

Rueda D, Bernard C, Gandy L, Capton E, Boudjelloul R, Brossier F, Veziris N, Zimic M, Sougakoff W.

Int J Mycobacteriol. 2018 Jan-Mar;7(1):16-25. doi: 10.4103/ijmy.ijmy_187_17.

26.

Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells.

Autour A, C Y Jeng S, D Cawte A, Abdolahzadeh A, Galli A, Panchapakesan SSS, Rueda D, Ryckelynck M, Unrau PJ.

Nat Commun. 2018 Feb 13;9(1):656. doi: 10.1038/s41467-018-02993-8.

27.

Comment on 'Distinct clinical outcomes of two CIMP-positive colorectal cancer subtypes based on a revised CIMP classification system'.

Tapial S, Rueda D, Arriba M, Luis García J, Brandáriz L, Pérez J, Rodríguez Y, García-Olmo D, González-Sarmiento R, Urioste M, Perea J.

Br J Cancer. 2018 Feb 6;118(3):e3. doi: 10.1038/bjc.2017.343. Epub 2018 Jan 2. No abstract available.

28.

Fitz-Hugh-Curtis Syndrome Caused by Gonococcal Infection in a Patient with Systemic Lupus Erythematous: A Case Report and Literature Review.

Rueda DA, Aballay L, Orbea L, Carrozza DA, Finocchietto P, Hernandez SB, Volpacchio MM, di Fonzo H.

Am J Case Rep. 2017 Dec 29;18:1396-1400. Review.

29.

Bulky Lesion Bypass Requires Dpo4 Binding in Distinct Conformations.

Liyanage PS, Walker AR, Brenlla A, Cisneros GA, Romano LJ, Rueda D.

Sci Rep. 2017 Dec 12;7(1):17383. doi: 10.1038/s41598-017-17643-0.

30.

DNA Bends the Knee to Transcription Factors.

Vámosi G, Rueda D.

Biophys J. 2018 May 22;114(10):2253-2254. doi: 10.1016/j.bpj.2017.10.047. Epub 2017 Dec 8. No abstract available.

31.

A common mechanism by which type 2A von Willebrand disease mutations enhance ADAMTS13 proteolysis revealed with a von Willebrand factor A2 domain FRET construct.

Lynch CJ, Cawte AD, Millar CM, Rueda D, Lane DA.

PLoS One. 2017 Nov 29;12(11):e0188405. doi: 10.1371/journal.pone.0188405. eCollection 2017.

32.

Absence of nuclease activity in commonly used oxygen-scavenging systems.

Gahlon HL, Poudevigne-Durance P, Rueda D.

BMC Res Notes. 2017 Nov 21;10(1):606. doi: 10.1186/s13104-017-2929-6.

33.

Mapping the sugar dependency for rational generation of a DNA-RNA hybrid-guided Cas9 endonuclease.

Rueda FO, Bista M, Newton MD, Goeppert AU, Cuomo ME, Gordon E, Kröner F, Read JA, Wrigley JD, Rueda D, Taylor BJM.

Nat Commun. 2017 Nov 20;8(1):1610. doi: 10.1038/s41467-017-01732-9.

34.

Role of GALNT12 in the genetic predisposition to attenuated adenomatous polyposis syndrome.

Lorca V, Rueda D, Martín-Morales L, Poves C, Fernández-Aceñero MJ, Ruiz-Ponte C, Llovet P, Marrupe D, García-Barberán V, García-Paredes B, Pérez-Segura P, de la Hoya M, Díaz-Rubio E, Caldés T, Garre P.

PLoS One. 2017 Nov 2;12(11):e0187312. doi: 10.1371/journal.pone.0187312. eCollection 2017.

35.

Single-cell heterogeneity and cell-cycle-related viral gene bursts in the human leukaemia virus HTLV-1.

Billman MR, Rueda D, Bangham CRM.

Wellcome Open Res. 2017 Sep 22;2:87. doi: 10.12688/wellcomeopenres.12469.2. eCollection 2017.

36.

Influence of DNA Lesions on Polymerase-Mediated DNA Replication at Single-Molecule Resolution.

Gahlon HL, Romano LJ, Rueda D.

Chem Res Toxicol. 2017 Nov 20;30(11):1972-1983. doi: 10.1021/acs.chemrestox.7b00224. Epub 2017 Oct 23. Review.

37.

Association Between Germline Mutations in BRF1, a Subunit of the RNA Polymerase III Transcription Complex, and Hereditary Colorectal Cancer.

Bellido F, Sowada N, Mur P, Lázaro C, Pons T, Valdés-Mas R, Pineda M, Aiza G, Iglesias S, Soto JL, Urioste M, Caldés T, Balbín M, Blay P, Rueda D, Durán M, Valencia A, Moreno V, Brunet J, Blanco I, Navarro M, Calin GA, Borck G, Puente XS, Capellá G, Valle L.

Gastroenterology. 2018 Jan;154(1):181-194.e20. doi: 10.1053/j.gastro.2017.09.005. Epub 2017 Sep 12.

PMID:
28912018
38.

Identification of Genetically Important Individuals of the Rediscovered Floreana Galápagos Giant Tortoise (Chelonoidis elephantopus) Provide Founders for Species Restoration Program.

Miller JM, Quinzin MC, Poulakakis N, Gibbs JP, Beheregaray LB, Garrick RC, Russello MA, Ciofi C, Edwards DL, Hunter EA, Tapia W, Rueda D, Carrión J, Valdivieso AA, Caccone A.

Sci Rep. 2017 Sep 13;7(1):11471. doi: 10.1038/s41598-017-11516-2. Erratum in: Sci Rep. 2018 Mar 12;8(1):4568.

39.

Argentinian/Chilean validation of the Spanish-language version of Addenbrooke's Cognitive Examination III for diagnosing dementia.

Bruno D, Slachevsky A, Fiorentino N, Rueda DS, Bruno G, Tagle AR, Olavarria L, Flores P, Lillo P, Roca M, Torralva T.

Neurologia. 2017 Aug 30. pii: S0213-4853(17)30250-5. doi: 10.1016/j.nrl.2017.06.004. [Epub ahead of print] English, Spanish.

40.

Takotsubo Myocardiopathy and Hyperthyroidism: A Case Report and Literature Review.

Rueda D, Aguirre R, Contardo D, Finocchietto P, Hernandez S, di Fonzo H.

Am J Case Rep. 2017 Aug 7;18:865-870. Review.

41.

Prospective Clinical Integration of an Amplicon-Based Next-Generation Sequencing Method to Select Advanced Non-Small-Cell Lung Cancer Patients for Genotype-Tailored Treatments.

Zugazagoitia J, Rueda D, Carrizo N, Enguita AB, Gómez-Sánchez D, Díaz-Serrano A, Jiménez E, Mérida A, Calero R, Lujan R, De Miguel E, Gámez P, Díaz-Hellín V, Nuñez JA, Iglesias L, Ferrer I, Paz-Ares L, Ponce-Aix S.

Clin Lung Cancer. 2018 Jan;19(1):65-73.e7. doi: 10.1016/j.cllc.2017.06.008. Epub 2017 Jun 23.

PMID:
28780976
42.

Use of exome sequencing to determine the full profile of genetic variants in the fluoropyrimidine pathway in colorectal cancer patients affected by severe toxicity.

Pellicer M, García-González X, García MI, Blanco C, García-Alfonso P, Robles L, Grávalos C, Rueda D, Martínez J, Pachón V, Longo F, Martínez V, Iglesias I, Salvador S, Sanjurjo M, López-Fernández LA.

Pharmacogenomics. 2017 Aug;18(13):1215-1223. doi: 10.2217/pgs-2017-0118. Epub 2017 Jul 26.

PMID:
28745575
43.

The effects of pesticides on morphology, viability, and germination of Blackberry (Rubus glaucus Benth.) and Tree tomato (Solanum betaceum Cav.) pollen grains.

Padilla F, Soria N, Oleas A, Rueda D, Manjunatha B, Kundapur RR, Maddela NR, Rajeswari B.

3 Biotech. 2017 Jul;7(3):154. doi: 10.1007/s13205-017-0781-y. Epub 2017 Jun 16.

44.

C-reactive protein is differentially modulated by co-existing infections, vitamin deficiencies and maternal factors in pregnant and lactating indigenous Panamanian women.

González-Fernández D, Pons EDC, Rueda D, Sinisterra OT, Murillo E, Scott ME, Koski KG.

Infect Dis Poverty. 2017 Jun 2;6(1):94. doi: 10.1186/s40249-017-0307-1.

45.

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A.

Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24.

PMID:
28436944
46.

NOMO-1 gene is deleted in early-onset colorectal cancer.

Perea J, García JL, Pérez J, Rueda D, Arriba M, Rodríguez Y, Urioste M, González-Sarmiento R.

Oncotarget. 2017 Apr 11;8(15):24429-24436. doi: 10.18632/oncotarget.15478.

47.

A high-resolution map of transcriptional repression.

Liang Z, Brown KE, Carroll T, Taylor B, Vidal IF, Hendrich B, Rueda D, Fisher AG, Merkenschlager M.

Elife. 2017 Mar 20;6. pii: e22767. doi: 10.7554/eLife.22767.

48.

Correction to "Molecular Crowding Accelerates Ribozyme Docking and Catalysis".

Paudel BP, Rueda D.

J Am Chem Soc. 2017 Mar 29;139(12):4582. doi: 10.1021/jacs.7b02376. Epub 2017 Mar 20. No abstract available.

49.

Unsupervised Analysis of Array Comparative Genomic Hybridization Data from Early-Onset Colorectal Cancer Reveals Equivalence with Molecular Classification and Phenotypes.

Arriba M, García JL, Rueda D, Pérez J, Brandariz L, Nutu OA, Alonso L, Rodríguez Y, Urioste M, González-Sarmiento R, Perea J.

Neoplasia. 2017 Jan;19(1):28-34. doi: 10.1016/j.neo.2016.11.006. Epub 2016 Dec 15.

50.

Frequency and impact of KRAS mutation in early onset colorectal cancer.

Perea J, Arriba M, Rodríguez Y, Rueda D, García JL, Pérez J, González-Sarmiento R, Urioste M.

Hum Pathol. 2017 Mar;61:221-222. doi: 10.1016/j.humpath.2016.07.039. Epub 2016 Nov 2. No abstract available.

PMID:
27816716

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