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RNA polymerases as moving barriers to condensin loop extrusion.

Brandão HB, Paul P, van den Berg AA, Rudner DZ, Wang X, Mirny LA.

Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20489-20499. doi: 10.1073/pnas.1907009116. Epub 2019 Sep 23.


SweC and SweD are essential co-factors of the FtsEX-CwlO cell wall hydrolase complex in Bacillus subtilis.

Brunet YR, Wang X, Rudner DZ.

PLoS Genet. 2019 Aug 22;15(8):e1008296. doi: 10.1371/journal.pgen.1008296. eCollection 2019 Aug.


A switch in surface polymer biogenesis triggers growth-phase-dependent and antibiotic-induced bacteriolysis.

Flores-Kim J, Dobihal GS, Fenton A, Rudner DZ, Bernhardt TG.

Elife. 2019 Apr 9;8. pii: e44912. doi: 10.7554/eLife.44912.


Evidence that regulation of intramembrane proteolysis is mediated by substrate gating during sporulation in Bacillus subtilis.

Ramírez-Guadiana FH, Rodrigues CDA, Marquis KA, Campo N, Barajas-Ornelas RDC, Brock K, Marks DS, Kruse AC, Rudner DZ.

PLoS Genet. 2018 Nov 7;14(11):e1007753. doi: 10.1371/journal.pgen.1007753. eCollection 2018 Nov.


Structural characterization of the sporulation protein GerM from Bacillus subtilis.

Trouve J, Mohamed A, Leisico F, Contreras-Martel C, Liu B, Mas C, Rudner DZ, Rodrigues CDA, Morlot C.

J Struct Biol. 2018 Dec;204(3):481-490. doi: 10.1016/j.jsb.2018.09.010. Epub 2018 Sep 25.


In Vivo Evidence for ATPase-Dependent DNA Translocation by the Bacillus subtilis SMC Condensin Complex.

Wang X, Hughes AC, Brandão HB, Walker B, Lierz C, Cochran JC, Oakley MG, Kruse AC, Rudner DZ.

Mol Cell. 2018 Sep 6;71(5):841-847.e5. doi: 10.1016/j.molcel.2018.07.006. Epub 2018 Aug 9.


Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis.

Sjodt M, Brock K, Dobihal G, Rohs PDA, Green AG, Hopf TA, Meeske AJ, Srisuknimit V, Kahne D, Walker S, Marks DS, Bernhardt TG, Rudner DZ, Kruse AC.

Nature. 2018 Apr 5;556(7699):118-121. doi: 10.1038/nature25985. Epub 2018 Mar 28.


Phosphorylation-dependent activation of the cell wall synthase PBP2a in Streptococcus pneumoniae by MacP.

Fenton AK, Manuse S, Flores-Kim J, Garcia PS, Mercy C, Grangeasse C, Bernhardt TG, Rudner DZ.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2812-2817. doi: 10.1073/pnas.1715218115. Epub 2018 Feb 27.


A two-step transport pathway allows the mother cell to nurture the developing spore in Bacillus subtilis.

Ramírez-Guadiana FH, Meeske AJ, Rodrigues CDA, Barajas-Ornelas RDC, Kruse AC, Rudner DZ.

PLoS Genet. 2017 Sep 25;13(9):e1007015. doi: 10.1371/journal.pgen.1007015. eCollection 2017 Sep.


The nucleoid occlusion factor Noc controls DNA replication initiation in Staphylococcus aureus.

Pang T, Wang X, Lim HC, Bernhardt TG, Rudner DZ.

PLoS Genet. 2017 Jul 19;13(7):e1006908. doi: 10.1371/journal.pgen.1006908. eCollection 2017 Jul.


The Bacillus subtilis germinant receptor GerA triggers premature germination in response to morphological defects during sporulation.

Ramírez-Guadiana FH, Meeske AJ, Wang X, Rodrigues CDA, Rudner DZ.

Mol Microbiol. 2017 Sep;105(5):689-704. doi: 10.1111/mmi.13728. Epub 2017 Jul 6.


Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis.

Koo BM, Kritikos G, Farelli JD, Todor H, Tong K, Kimsey H, Wapinski I, Galardini M, Cabal A, Peters JM, Hachmann AB, Rudner DZ, Allen KN, Typas A, Gross CA.

Cell Syst. 2017 Mar 22;4(3):291-305.e7. doi: 10.1016/j.cels.2016.12.013. Epub 2017 Feb 8.


Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

Wang X, Brandão HB, Le TB, Laub MT, Rudner DZ.

Science. 2017 Feb 3;355(6324):524-527. doi: 10.1126/science.aai8982.


Erratum: CozE is a member of the MreCD complex that directs cell elongation in Streptococcus pneumoniae.

Fenton AK, El Mortaji L, Lau DT, Rudner DZ, Bernhardt TG.

Nat Microbiol. 2017 Jan 23;2:17011. doi: 10.1038/nmicrobiol.2017.11. No abstract available.


CozE is a member of the MreCD complex that directs cell elongation in Streptococcus pneumoniae.

Fenton AK, El Mortaji L, Lau DT, Rudner DZ, Bernhardt TG.

Nat Microbiol. 2016 Dec 12;2:16237. doi: 10.1038/nmicrobiol.2016.237. Erratum in: Nat Microbiol. 2017 Jan 23;2:17011.


A ring-shaped conduit connects the mother cell and forespore during sporulation in Bacillus subtilis.

Rodrigues CD, Henry X, Neumann E, Kurauskas V, Bellard L, Fichou Y, Schanda P, Schoehn G, Rudner DZ, Morlot C.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11585-11590. Epub 2016 Sep 28.


SEDS proteins are a widespread family of bacterial cell wall polymerases.

Meeske AJ, Riley EP, Robins WP, Uehara T, Mekalanos JJ, Kahne D, Walker S, Kruse AC, Bernhardt TG, Rudner DZ.

Nature. 2016 Sep 29;537(7622):634-638. doi: 10.1038/nature19331. Epub 2016 Aug 15.


GerM is required to assemble the basal platform of the SpoIIIA-SpoIIQ transenvelope complex during sporulation in Bacillus subtilis.

Rodrigues CD, Ramírez-Guadiana FH, Meeske AJ, Wang X, Rudner DZ.

Mol Microbiol. 2016 Oct;102(2):260-273. doi: 10.1111/mmi.13457. Epub 2016 Jul 22.


High-Throughput Genetic Screens Identify a Large and Diverse Collection of New Sporulation Genes in Bacillus subtilis.

Meeske AJ, Rodrigues CD, Brady J, Lim HC, Bernhardt TG, Rudner DZ.

PLoS Biol. 2016 Jan 6;14(1):e1002341. doi: 10.1371/journal.pbio.1002341. eCollection 2016 Jan.


Salt-sensitivity of σ(H) and Spo0A prevents sporulation of Bacillus subtilis at high osmolarity avoiding death during cellular differentiation.

Widderich N, Rodrigues CD, Commichau FM, Fischer KE, Ramirez-Guadiana FH, Rudner DZ, Bremer E.

Mol Microbiol. 2016 Apr;100(1):108-24. doi: 10.1111/mmi.13304. Epub 2016 Jan 18.


An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.

Arrieta-Ortiz ML, Hafemeister C, Bate AR, Chu T, Greenfield A, Shuster B, Barry SN, Gallitto M, Liu B, Kacmarczyk T, Santoriello F, Chen J, Rodrigues CD, Sato T, Rudner DZ, Driks A, Bonneau R, Eichenberger P.

Mol Syst Biol. 2015 Nov 17;11(11):839. doi: 10.15252/msb.20156236.


Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis.

Wang X, Le TB, Lajoie BR, Dekker J, Laub MT, Rudner DZ.

Genes Dev. 2015 Aug 1;29(15):1661-75. doi: 10.1101/gad.265876.115.


MurJ and a novel lipid II flippase are required for cell wall biogenesis in Bacillus subtilis.

Meeske AJ, Sham LT, Kimsey H, Koo BM, Gross CA, Bernhardt TG, Rudner DZ.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6437-42. doi: 10.1073/pnas.1504967112. Epub 2015 Apr 27.


Spatial organization of bacterial chromosomes.

Wang X, Rudner DZ.

Curr Opin Microbiol. 2014 Dec;22:66-72. doi: 10.1016/j.mib.2014.09.016. Review.


Bacillus subtilis chromosome organization oscillates between two distinct patterns.

Wang X, Montero Llopis P, Rudner DZ.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12877-82. doi: 10.1073/pnas.1407461111. Epub 2014 Jul 28.


Reconstitution of peptidoglycan cross-linking leads to improved fluorescent probes of cell wall synthesis.

Lebar MD, May JM, Meeske AJ, Leiman SA, Lupoli TJ, Tsukamoto H, Losick R, Rudner DZ, Walker S, Kahne D.

J Am Chem Soc. 2014 Aug 6;136(31):10874-7. doi: 10.1021/ja505668f. Epub 2014 Jul 24.


Condensation and localization of the partitioning protein ParB on the bacterial chromosome.

Broedersz CP, Wang X, Meir Y, Loparo JJ, Rudner DZ, Wingreen NS.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8809-14. doi: 10.1073/pnas.1402529111. Epub 2014 Jun 3.


ParB spreading requires DNA bridging.

Graham TG, Wang X, Song D, Etson CM, van Oijen AM, Rudner DZ, Loparo JJ.

Genes Dev. 2014 Jun 1;28(11):1228-38. doi: 10.1101/gad.242206.114. Epub 2014 May 14.


The SMC condensin complex is required for origin segregation in Bacillus subtilis.

Wang X, Tang OW, Riley EP, Rudner DZ.

Curr Biol. 2014 Feb 3;24(3):287-92. doi: 10.1016/j.cub.2013.11.050. Epub 2014 Jan 16.


CtpB assembles a gated protease tunnel regulating cell-cell signaling during spore formation in Bacillus subtilis.

Mastny M, Heuck A, Kurzbauer R, Heiduk A, Boisguerin P, Volkmer R, Ehrmann M, Rodrigues CD, Rudner DZ, Clausen T.

Cell. 2013 Oct 24;155(3):647-58. doi: 10.1016/j.cell.2013.09.050. Epub 2013 Oct 24.


FtsEX is required for CwlO peptidoglycan hydrolase activity during cell wall elongation in Bacillus subtilis.

Meisner J, Montero Llopis P, Sham LT, Garner E, Bernhardt TG, Rudner DZ.

Mol Microbiol. 2013 Sep;89(6):1069-83. doi: 10.1111/mmi.12330. Epub 2013 Aug 1.


Peptidoglycan hydrolysis is required for assembly and activity of the transenvelope secretion complex during sporulation in Bacillus subtilis.

Rodrigues CD, Marquis KA, Meisner J, Rudner DZ.

Mol Microbiol. 2013 Sep;89(6):1039-52. doi: 10.1111/mmi.12322. Epub 2013 Aug 1.


Organization and segregation of bacterial chromosomes.

Wang X, Montero Llopis P, Rudner DZ.

Nat Rev Genet. 2013 Mar;14(3):191-203. doi: 10.1038/nrg3375. Epub 2013 Feb 12. Review.


FisB mediates membrane fission during sporulation in Bacillus subtilis.

Doan T, Coleman J, Marquis KA, Meeske AJ, Burton BM, Karatekin E, Rudner DZ.

Genes Dev. 2013 Feb 1;27(3):322-34. doi: 10.1101/gad.209049.112.


Bypass of a protein barrier by a replicative DNA helicase.

Yardimci H, Wang X, Loveland AB, Tappin I, Rudner DZ, Hurwitz J, van Oijen AM, Walter JC.

Nature. 2012 Dec 13;492(7428):205-9. doi: 10.1038/nature11730. Epub 2012 Nov 28.


Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

Jackson D, Wang X, Rudner DZ.

Cold Spring Harb Perspect Biol. 2012 Aug 1;4(8):a010389. doi: 10.1101/cshperspect.a010389. Review.


RefZ facilitates the switch from medial to polar division during spore formation in Bacillus subtilis.

Wagner-Herman JK, Bernard R, Dunne R, Bisson-Filho AW, Kumar K, Nguyen T, Mulcahy L, Koullias J, Gueiros-Filho FJ, Rudner DZ.

J Bacteriol. 2012 Sep;194(17):4608-18. doi: 10.1128/JB.00378-12. Epub 2012 Jun 22.


Coupled, circumferential motions of the cell wall synthesis machinery and MreB filaments in B. subtilis.

Garner EC, Bernard R, Wang W, Zhuang X, Rudner DZ, Mitchison T.

Science. 2011 Jul 8;333(6039):222-5. doi: 10.1126/science.1203285. Epub 2011 Jun 2.


Nucleoid occlusion prevents cell division during replication fork arrest in Bacillus subtilis.

Bernard R, Marquis KA, Rudner DZ.

Mol Microbiol. 2010 Nov;78(4):866-82. doi: 10.1111/j.1365-2958.2010.07369.x. Epub 2010 Sep 23.


Protein subcellular localization in bacteria.

Rudner DZ, Losick R.

Cold Spring Harb Perspect Biol. 2010 Apr;2(4):a000307. doi: 10.1101/cshperspect.a000307. Epub 2010 Mar 3. Review.


A highly coordinated cell wall degradation machine governs spore morphogenesis in Bacillus subtilis.

Morlot C, Uehara T, Marquis KA, Bernhardt TG, Rudner DZ.

Genes Dev. 2010 Feb 15;24(4):411-22. doi: 10.1101/gad.1878110.


SirA enforces diploidy by inhibiting the replication initiator DnaA during spore formation in Bacillus subtilis.

Wagner JK, Marquis KA, Rudner DZ.

Mol Microbiol. 2009 Sep;73(5):963-74. doi: 10.1111/j.1365-2958.2009.06825.x. Epub 2009 Aug 4.


Novel secretion apparatus maintains spore integrity and developmental gene expression in Bacillus subtilis.

Doan T, Morlot C, Meisner J, Serrano M, Henriques AO, Moran CP Jr, Rudner DZ.

PLoS Genet. 2009 Jul;5(7):e1000566. doi: 10.1371/journal.pgen.1000566. Epub 2009 Jul 17.


Recruitment of SMC by ParB-parS organizes the origin region and promotes efficient chromosome segregation.

Sullivan NL, Marquis KA, Rudner DZ.

Cell. 2009 May 15;137(4):697-707. doi: 10.1016/j.cell.2009.04.044.


SpoIIIE strips proteins off the DNA during chromosome translocation.

Marquis KA, Burton BM, Nollmann M, Ptacin JL, Bustamante C, Ben-Yehuda S, Rudner DZ.

Genes Dev. 2008 Jul 1;22(13):1786-95. doi: 10.1101/gad.1684008.


The ATPase SpoIIIE transports DNA across fused septal membranes during sporulation in Bacillus subtilis.

Burton BM, Marquis KA, Sullivan NL, Rapoport TA, Rudner DZ.

Cell. 2007 Dec 28;131(7):1301-12.


SpoIIQ anchors membrane proteins on both sides of the sporulation septum in Bacillus subtilis.

Campo N, Marquis KA, Rudner DZ.

J Biol Chem. 2008 Feb 22;283(8):4975-82. Epub 2007 Dec 11.


A singular enzymatic megacomplex from Bacillus subtilis.

Straight PD, Fischbach MA, Walsh CT, Rudner DZ, Kolter R.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):305-10. Epub 2006 Dec 26.

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