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Items: 1 to 50 of 166

1.

Liquid array diagnostics: a novel method for rapid detection of microbial communities in single-tube multiplex reactions.

Hiseni P, Wilson RC, Storrø O, Johnsen R, Øien T, Rudi K.

Biotechniques. 2019 Mar;66(3):143-149. doi: 10.2144/btn-2018-0134.

2.

Exploring the Brine Microbiota of a Traditional Norwegian Fermented Fish Product (Rakfisk) from Six Different Producers during Two Consecutive Seasonal Productions.

Bjerke GA, Rudi K, Avershina E, Moen B, Blom H, Axelsson L.

Foods. 2019 Feb 14;8(2). pii: E72. doi: 10.3390/foods8020072.

3.

Allergen Immunization Induces Major Changes in Microbiota Composition and Short-Chain Fatty Acid Production in Different Gut Segments in a Mouse Model of Lupine Food Allergy.

Andreassen M, Rudi K, Angell IL, Dirven H, Nygaard UC.

Int Arch Allergy Immunol. 2018;177(4):311-323. doi: 10.1159/000492006. Epub 2018 Sep 21.

PMID:
30244242
4.

Is amniotic fluid of women with uncomplicated term pregnancies free of bacteria?

Rehbinder EM, Lødrup Carlsen KC, Staff AC, Angell IL, Landrø L, Hilde K, Gaustad P, Rudi K.

Am J Obstet Gynecol. 2018 Sep;219(3):289.e1-289.e12. doi: 10.1016/j.ajog.2018.05.028. Epub 2018 May 29.

PMID:
29852156
5.

Low Maternal Microbiota Sharing across Gut, Breast Milk and Vagina, as Revealed by 16S rRNA Gene and Reduced Metagenomic Sequencing.

Avershina E, Angell IL, Simpson M, Storrø O, Øien T, Johnsen R, Rudi K.

Genes (Basel). 2018 May 1;9(5). pii: E231. doi: 10.3390/genes9050231.

6.

Impact of HIV and Type 2 diabetes on Gut Microbiota Diversity, Tryptophan Catabolism and Endothelial Dysfunction.

Hoel H, Hove-Skovsgaard M, Hov JR, Gaardbo JC, Holm K, Kummen M, Rudi K, Nwosu F, Valeur J, Gelpi M, Seljeflot I, Ueland PM, Gerstoft J, Ullum H, Aukrust P, Nielsen SD, Trøseid M.

Sci Rep. 2018 Apr 30;8(1):6725. doi: 10.1038/s41598-018-25168-3.

7.

Preventing Atopic Dermatitis and ALLergies in Children-the PreventADALL study.

Lødrup Carlsen KC, Rehbinder EM, Skjerven HO, Carlsen MH, Fatnes TA, Fugelli P, Granum B, Haugen G, Hedlin G, Jonassen CM, Landrø L, Lunde J, Marsland BJ, Nordlund B, Rudi K, Sjøborg K, Söderhäll C, Cathrine Staff A, Vettukattil R, Carlsen KH; study group.

Allergy. 2018 Oct;73(10):2063-2070. doi: 10.1111/all.13468. Epub 2018 Jun 19. No abstract available.

PMID:
29710408
8.

Addressing the diversity of the honeybee gut symbiont Gilliamella: description of Gilliamella apis sp. nov., isolated from the gut of honeybees (Apis mellifera).

Ludvigsen J, Porcellato D, Amdam GV, Rudi K.

Int J Syst Evol Microbiol. 2018 May;68(5):1762-1770. doi: 10.1099/ijsem.0.002749. Epub 2018 Apr 6.

PMID:
29624166
9.

Earthworms are associated with subpopulations of Gammaproteobacteria irrespective of the total soil microbiota composition and stability.

Fjøsne T, Myromslien FD, Wilson RC, Rudi K.

FEMS Microbiol Lett. 2018 May 1;365(9). doi: 10.1093/femsle/fny071.

PMID:
29579208
10.

Detection and Characterization of Streptomycin Resistance (strA-strB) in a Honeybee Gut Symbiont (Snodgrassella alvi) and the Associated Risk of Antibiotic Resistance Transfer.

Ludvigsen J, Amdam GV, Rudi K, L'Abée-Lund TM.

Microb Ecol. 2018 Oct;76(3):588-591. doi: 10.1007/s00248-018-1171-7. Epub 2018 Mar 8.

PMID:
29520453
11.

Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota.

Ravi A, Avershina E, Angell IL, Ludvigsen J, Manohar P, Padmanaban S, Nachimuthu R, Snipen L, Rudi K.

J Microbiol Methods. 2018 Jun;149:44-52. doi: 10.1016/j.mimet.2018.02.016. Epub 2018 Mar 1.

PMID:
29501688
12.

Investigating antibiotics, antibiotic resistance genes, and microbial contaminants in groundwater in relation to the proximity of urban areas.

Szekeres E, Chiriac CM, Baricz A, Szőke-Nagy T, Lung I, Soran ML, Rudi K, Dragos N, Coman C.

Environ Pollut. 2018 May;236:734-744. doi: 10.1016/j.envpol.2018.01.107. Epub 2018 Feb 15.

PMID:
29454283
13.

Breastfeeding-associated microbiota in human milk following supplementation with Lactobacillus rhamnosus GG, Lactobacillus acidophilus La-5, and Bifidobacterium animalis ssp. lactis Bb-12.

Simpson MR, Avershina E, Storrø O, Johnsen R, Rudi K, Øien T.

J Dairy Sci. 2018 Feb;101(2):889-899. doi: 10.3168/jds.2017-13411. Epub 2017 Dec 14.

14.

Diversity of vaginal microbiota increases by the time of labor onset.

Avershina E, Slangsvold S, Simpson MR, Storrø O, Johnsen R, Øien T, Rudi K.

Sci Rep. 2017 Dec 14;7(1):17558. doi: 10.1038/s41598-017-17972-0.

15.

iNOS- and NOX1-dependent ROS production maintains bacterial homeostasis in the ileum of mice.

Matziouridou C, Rocha SDC, Haabeth OA, Rudi K, Carlsen H, Kielland A.

Mucosal Immunol. 2018 May;11(3):774-784. doi: 10.1038/mi.2017.106. Epub 2017 Dec 6.

PMID:
29210363
16.

Functional Bowel Disorders Are Associated with a Central Immune Activation.

Farup PG, Ueland T, Rudi K, Lydersen S, Hestad K.

Gastroenterol Res Pract. 2017;2017:1642912. doi: 10.1155/2017/1642912. Epub 2017 Oct 23.

17.

Transmission and persistence of IncF conjugative plasmids in the gut microbiota of full-term infants.

Ravi A, Valdés-Varela L, Gueimonde M, Rudi K.

FEMS Microbiol Ecol. 2018 Jan 1;94(1). doi: 10.1093/femsec/fix158.

PMID:
29161377
18.

Stable Core Gut Microbiota across the Freshwater-to-Saltwater Transition for Farmed Atlantic Salmon.

Rudi K, Angell IL, Pope PB, Vik JO, Sandve SR, Snipen LG.

Appl Environ Microbiol. 2018 Jan 2;84(2). pii: e01974-17. doi: 10.1128/AEM.01974-17. Print 2018 Jan 15.

19.

Geographically widespread honeybee-gut symbiont subgroups show locally distinct antibiotic-resistant patterns.

Ludvigsen J, Porcellato D, L'Abée-Lund TM, Amdam GV, Rudi K.

Mol Ecol. 2017 Dec;26(23):6590-6607. doi: 10.1111/mec.14392. Epub 2017 Nov 23.

PMID:
29087008
20.

Cecal microbiota association with tumor load in a colorectal cancer mouse model.

Bråten LS, Sødring M, Paulsen JE, Snipen LG, Rudi K.

Microb Ecol Health Dis. 2017 Jan 1;28(1):1352433. doi: 10.1080/16512235.2017.1352433. eCollection 2017.

21.

Modulation of the gut microbiota by prebiotic fibres and bacteriocins.

Umu ÖCO, Rudi K, Diep DB.

Microb Ecol Health Dis. 2017 Jan 1;28(1):1348886. doi: 10.1080/16512235.2017.1348886. eCollection 2017. Review.

22.

Early gut mycobiota and mother-offspring transfer.

Schei K, Avershina E, Øien T, Rudi K, Follestad T, Salamati S, Ødegård RA.

Microbiome. 2017 Aug 24;5(1):107. doi: 10.1186/s40168-017-0319-x.

23.

Differences in Temperature and Water Chemistry Shape Distinct Diversity Patterns in Thermophilic Microbial Communities.

Chiriac CM, Szekeres E, Rudi K, Baricz A, Hegedus A, Dragoş N, Coman C.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01363-17. doi: 10.1128/AEM.01363-17. Print 2017 Nov 1.

24.

Microbial Composition and Diversity Patterns in Deep Hyperthermal Aquifers from the Western Plain of Romania.

Chiriac CM, Baricz A, Szekeres E, Rudi K, Dragoș N, Coman C.

Microb Ecol. 2018 Jan;75(1):38-51. doi: 10.1007/s00248-017-1031-x. Epub 2017 Jul 13.

PMID:
28702708
25.

Association of the gut microbiota mobilome with hospital location and birth weight in preterm infants.

Ravi A, Estensmo ELF, Abée-Lund TML, Foley SL, Allgaier B, Martin CR, Claud EC, Rudi K.

Pediatr Res. 2017 Nov;82(5):829-838. doi: 10.1038/pr.2017.146. Epub 2017 Aug 2.

PMID:
28665922
26.

Body fluid prediction from microbial patterns for forensic application.

Hanssen EN, Avershina E, Rudi K, Gill P, Snipen L.

Forensic Sci Int Genet. 2017 Sep;30:10-17. doi: 10.1016/j.fsigen.2017.05.009. Epub 2017 Jun 1.

PMID:
28605650
27.

A diet change from dry food to beef induces reversible changes on the faecal microbiota in healthy, adult client-owned dogs.

Herstad KMV, Gajardo K, Bakke AM, Moe L, Ludvigsen J, Rudi K, Rud I, Sekelja M, Skancke E.

BMC Vet Res. 2017 May 30;13(1):147. doi: 10.1186/s12917-017-1073-9.

28.

Prokaryote species richness is positively correlated with eukaryote abundance in wastewater treatment biofilms.

Angell IL, Hanssen JF, Rudi K.

Lett Appl Microbiol. 2017 Jul;65(1):66-72. doi: 10.1111/lam.12746.

PMID:
28418627
29.

Abundance of antibiotics, antibiotic resistance genes and bacterial community composition in wastewater effluents from different Romanian hospitals.

Szekeres E, Baricz A, Chiriac CM, Farkas A, Opris O, Soran ML, Andrei AS, Rudi K, Balcázar JL, Dragos N, Coman C.

Environ Pollut. 2017 Jun;225:304-315. doi: 10.1016/j.envpol.2017.01.054. Epub 2017 Mar 25.

PMID:
28347610
30.

Cytosolic BNIP3 Dimer Interacts with Mitochondrial BAX Forming Heterodimers in the Mitochondrial Outer Membrane under Basal Conditions.

Hendgen-Cotta UB, Esfeld S, Rudi K, Miinalainen I, Klare JP, Rassaf T.

Int J Mol Sci. 2017 Mar 23;18(4). pii: E687. doi: 10.3390/ijms18040687.

31.

Effect of probiotics in prevention of atopic dermatitis is dependent on the intrinsic microbiota at early infancy.

Avershina E, Cabrera Rubio R, Lundgård K, Perez Martinez G, Collado MC, Storrø O, Øien T, Dotterud CK, Johnsen R, Rudi K.

J Allergy Clin Immunol. 2017 Apr;139(4):1399-1402.e8. doi: 10.1016/j.jaci.2016.09.056. Epub 2016 Dec 5. No abstract available.

PMID:
27931973
32.

Rumen microbiota for wild boreal cervids living in the same habitat.

Østbye K, Wilson R, Rudi K.

FEMS Microbiol Lett. 2016 Oct;363(20). pii: fnw233. Epub 2016 Oct 12.

PMID:
27737946
33.

Diet-Dependent Modular Dynamic Interactions of the Equine Cecal Microbiota.

Kristoffersen C, Jensen RB, Avershina E, Austbø D, Tauson AH, Rudi K.

Microbes Environ. 2016 Dec 23;31(4):378-386. doi: 10.1264/jsme2.ME16061. Epub 2016 Oct 21.

34.

Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake.

Mandal S, Godfrey KM, McDonald D, Treuren WV, Bjørnholt JV, Midtvedt T, Moen B, Rudi K, Knight R, Brantsæter AL, Peddada SD, Eggesbø M.

Microbiome. 2016 Oct 19;4(1):55.

35.

Ferredoxin:NADP(H) Oxidoreductase Abundance and Location Influences Redox Poise and Stress Tolerance.

Kozuleva M, Goss T, Twachtmann M, Rudi K, Trapka J, Selinski J, Ivanov B, Garapati P, Steinhoff HJ, Hase T, Scheibe R, Klare JP, Hanke GT.

Plant Physiol. 2016 Nov;172(3):1480-1493. Epub 2016 Sep 15. Erratum in: Plant Physiol. 2017 Mar;173(3):1933.

36.

Bead-beating artefacts in the Bacteroidetes to Firmicutes ratio of the human stool metagenome.

Vebø HC, Karlsson MK, Avershina E, Finnby L, Rudi K.

J Microbiol Methods. 2016 Oct;129:78-80. doi: 10.1016/j.mimet.2016.08.005. Epub 2016 Aug 4.

PMID:
27498349
37.

Enterotoxin Gene Profile and Molecular Characterization of Staphylococcus aureus Isolates from Bovine Bulk Milk and Milk Products of Tigray Region, Northern Ethiopia.

Tarekgne EK, Skjerdal T, Skeie S, Rudi K, Porcellato D, Félix B, Narvhus JA.

J Food Prot. 2016 Aug;79(8):1387-95. doi: 10.4315/0362-028X.JFP-16-003.

PMID:
27497126
38.

Faecal short-chain fatty acids - a diagnostic biomarker for irritable bowel syndrome?

Farup PG, Rudi K, Hestad K.

BMC Gastroenterol. 2016 Apr 27;16(1):51. doi: 10.1186/s12876-016-0446-z.

39.

Rearing Room Affects the Non-dominant Chicken Cecum Microbiota, While Diet Affects the Dominant Microbiota.

Ludvigsen J, Svihus B, Rudi K.

Front Vet Sci. 2016 Feb 25;3:16. doi: 10.3389/fvets.2016.00016. eCollection 2016.

40.

Transition from infant- to adult-like gut microbiota.

Avershina E, Lundgård K, Sekelja M, Dotterud C, Storrø O, Øien T, Johnsen R, Rudi K.

Environ Microbiol. 2016 Jul;18(7):2226-36. doi: 10.1111/1462-2920.13248. Epub 2016 Mar 21.

PMID:
26913851
41.

Potential association of vacuum cleaning frequency with an altered gut microbiota in pregnant women and their 2-year-old children.

Avershina E, Ravi A, Storrø O, Øien T, Johnsen R, Rudi K.

Microbiome. 2015 Dec 21;3:65. doi: 10.1186/s40168-015-0125-2.

42.

The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons.

Ravi A, Avershina E, Foley SL, Ludvigsen J, Storrø O, Øien T, Johnsen R, McCartney AL, L'Abée-Lund TM, Rudi K.

Sci Rep. 2015 Oct 28;5:15317. doi: 10.1038/srep15317.

43.

Gut microbiota diversity predicts immune status in HIV-1 infection.

Nowak P, Troseid M, Avershina E, Barqasho B, Neogi U, Holm K, Hov JR, Noyan K, Vesterbacka J, Svärd J, Rudi K, Sönnerborg A.

AIDS. 2015 Nov 28;29(18):2409-18. doi: 10.1097/QAD.0000000000000869.

PMID:
26355675
44.

Shifts in the Midgut/Pyloric Microbiota Composition within a Honey Bee Apiary throughout a Season.

Ludvigsen J, Rangberg A, Avershina E, Sekelja M, Kreibich C, Amdam G, Rudi K.

Microbes Environ. 2015;30(3):235-44. doi: 10.1264/jsme2.ME15019. Epub 2015 Sep 1.

45.

Conformational heterogeneity of the Roc domains in C. tepidum Roc-COR and implications for human LRRK2 Parkinson mutations.

Rudi K, Ho FY, Gilsbach BK, Pots H, Wittinghofer A, Kortholt A, Klare JP.

Biosci Rep. 2015 Aug 26;35(5). pii: e00254. doi: 10.1042/BSR20150128.

46.

Reduced Levels of D-dimer and Changes in Gut Microbiota Composition After Probiotic Intervention in HIV-Infected Individuals on Stable ART.

Stiksrud B, Nowak P, Nwosu FC, Kvale D, Thalme A, Sonnerborg A, Ueland PM, Holm K, Birkeland SE, Dahm AE, Sandset PM, Rudi K, Hov JR, Dyrhol-Riise AM, Trøseid M.

J Acquir Immune Defic Syndr. 2015 Dec 1;70(4):329-37. doi: 10.1097/QAI.0000000000000784.

PMID:
26258571
47.

High nutrient availability reduces the diversity and stability of the equine caecal microbiota.

Hansen NC, Avershina E, Mydland LT, Næsset JA, Austbø D, Moen B, Måge I, Rudi K.

Microb Ecol Health Dis. 2015 Aug 4;26:27216. doi: 10.3402/mehd.v26.27216. eCollection 2015.

48.

High-Resolution Analyses of Overlap in the Microbiota Between Mothers and Their Children.

Schanche M, Avershina E, Dotterud C, Øien T, Storrø O, Johnsen R, Rudi K.

Curr Microbiol. 2015 Aug;71(2):283-90. doi: 10.1007/s00284-015-0843-5. Epub 2015 Jun 5.

PMID:
26044992
49.

Confusion about the species richness of human gut microbiota.

Avershina E, Rudi K.

Benef Microbes. 2015;6(5):657-9. doi: 10.3920/BM2015.0007. Epub 2015 Jun 3.

PMID:
26036144
50.

Deviations in human gut microbiota: a novel diagnostic test for determining dysbiosis in patients with IBS or IBD.

Casén C, Vebø HC, Sekelja M, Hegge FT, Karlsson MK, Ciemniejewska E, Dzankovic S, Frøyland C, Nestestog R, Engstrand L, Munkholm P, Nielsen OH, Rogler G, Simrén M, Öhman L, Vatn MH, Rudi K.

Aliment Pharmacol Ther. 2015 Jul;42(1):71-83. doi: 10.1111/apt.13236. Epub 2015 May 14.

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