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Items: 1 to 50 of 80

1.

Global Health-related Training Opportunities: A National Survey of Pulmonary and Critical Care Medicine Fellowship Programs.

North CM, Attia EF, Rudd KE, Siddharthan T, Papali A, Çoruh B, Carter EJ, Christiani DC, Richards JB, Huang L, Engelberg R, Checkley W, West TE.

Ann Am Thorac Soc. 2019 Jun 14. doi: 10.1513/AnnalsATS.201812-856OC. [Epub ahead of print]

PMID:
31199665
2.

Validity of the qSOFA Score in Low- and Middle-Income Countries-Reply.

Rudd KE, Seymour CW, Angus DC.

JAMA. 2018 Nov 20;320(19):2039-2040. doi: 10.1001/jama.2018.14477. No abstract available.

PMID:
30458489
3.

The global burden of sepsis: barriers and potential solutions.

Rudd KE, Kissoon N, Limmathurotsakul D, Bory S, Mutahunga B, Seymour CW, Angus DC, West TE.

Crit Care. 2018 Sep 23;22(1):232. doi: 10.1186/s13054-018-2157-z. Review.

4.

Prehospital Care and Emergency Department Door-to-Antibiotic Time in Sepsis.

Peltan ID, Mitchell KH, Rudd KE, Mann BA, Carlbom DJ, Rea TD, Butler AM, Hough CL, Brown SM.

Ann Am Thorac Soc. 2018 Dec;15(12):1443-1450. doi: 10.1513/AnnalsATS.201803-199OC.

PMID:
30153044
5.

Association of the Quick Sequential (Sepsis-Related) Organ Failure Assessment (qSOFA) Score With Excess Hospital Mortality in Adults With Suspected Infection in Low- and Middle-Income Countries.

Rudd KE, Seymour CW, Aluisio AR, Augustin ME, Bagenda DS, Beane A, Byiringiro JC, Chang CH, Colas LN, Day NPJ, De Silva AP, Dondorp AM, Dünser MW, Faiz MA, Grant DS, Haniffa R, Van Hao N, Kennedy JN, Levine AC, Limmathurotsakul D, Mohanty S, Nosten F, Papali A, Patterson AJ, Schieffelin JS, Shaffer JG, Thuy DB, Thwaites CL, Urayeneza O, White NJ, West TE, Angus DC; Sepsis Assessment and Identification in Low Resource Settings (SAILORS) Collaboration.

JAMA. 2018 Jun 5;319(21):2202-2211. doi: 10.1001/jama.2018.6229.

6.

Mortality outcomes based on ED qSOFA score and HIV status in a developing low income country.

Aluisio AR, Garbern S, Wiskel T, Mutabazi ZA, Umuhire O, Ch'ng CC, Rudd KE, D'Arc Nyinawankusi J, Byiringiro JC, Levine AC.

Am J Emerg Med. 2018 Nov;36(11):2010-2019. doi: 10.1016/j.ajem.2018.03.014. Epub 2018 Mar 10.

PMID:
29576257
7.

Counting Sepsis, an Imprecise but Improving Science.

Rudd KE, Delaney A, Finfer S.

JAMA. 2017 Oct 3;318(13):1228-1229. doi: 10.1001/jama.2017.13697. No abstract available.

PMID:
28903164
8.

Neonatal abstinence syndrome and early childhood morbidity and mortality in Washington state: a retrospective cohort study.

Witt CE, Rudd KE, Bhatraju P, Rivara FP, Hawes SE, Weiss NS.

J Perinatol. 2017 Oct;37(10):1124-1129. doi: 10.1038/jp.2017.106. Epub 2017 Jul 6.

9.

Physician Variation in Time to Antimicrobial Treatment for Septic Patients Presenting to the Emergency Department.

Peltan ID, Mitchell KH, Rudd KE, Mann BA, Carlbom DJ, Hough CL, Rea TD, Brown SM.

Crit Care Med. 2017 Jun;45(6):1011-1018. doi: 10.1097/CCM.0000000000002436.

10.

Presentation, management, and outcomes of sepsis in adults and children admitted to a rural Ugandan hospital: A prospective observational cohort study.

Rudd KE, Tutaryebwa LK, West TE.

PLoS One. 2017 Feb 15;12(2):e0171422. doi: 10.1371/journal.pone.0171422. eCollection 2017.

11.

Hepatic abscess-associated Clostridial bacteraemia presenting with intravascular haemolysis and severe hypertension.

Lim AG, Rudd KE, Halliday M, Hess JR.

BMJ Case Rep. 2016 Jan 28;2016. pii: bcr2015213253. doi: 10.1136/bcr-2015-213253.

12.

Aligning institutional priorities: engaging house staff in a quality improvement and safety initiative to fulfill Clinical Learning Environment Review objectives and electronic medical record Meaningful Use requirements.

Flanagan MR, Foster CC, Schleyer A, Peterson GN, Mandell SP, Rudd KE, Joyner BD, Payne TH.

Am J Surg. 2016 Feb;211(2):390-7. doi: 10.1016/j.amjsurg.2015.09.006. Epub 2015 Nov 10.

PMID:
26687964
13.

A role for REP sequences in regulating translation.

Liang W, Rudd KE, Deutscher MP.

Mol Cell. 2015 May 7;58(3):431-9. doi: 10.1016/j.molcel.2015.03.019. Epub 2015 Apr 16.

14.

GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H.

Nucleic Acids Res. 2015 Jan;43(Database issue):D606-17. doi: 10.1093/nar/gku1164. Epub 2014 Nov 15.

15.

Structural analysis and mutant growth properties reveal distinctive enzymatic and cellular roles for the three major L-alanine transaminases of Escherichia coli.

Peña-Soler E, Fernandez FJ, López-Estepa M, Garces F, Richardson AJ, Quintana JF, Rudd KE, Coll M, Vega MC.

PLoS One. 2014 Jul 11;9(7):e102139. doi: 10.1371/journal.pone.0102139. eCollection 2014.

16.

The COMBREX project: design, methodology, and initial results.

Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.

PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. No abstract available.

17.

EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes.

Zhou J, Richardson AJ, Rudd KE.

Bioinformatics. 2013 Aug 1;29(15):1917-8. doi: 10.1093/bioinformatics/btt302. Epub 2013 Jun 4.

18.

Clinical research during a public health emergency: a systematic review of severe pandemic influenza management.

Ortiz JR, Rudd KE, Clark DV, Jacob ST, West TE.

Crit Care Med. 2013 May;41(5):1345-52. doi: 10.1097/CCM.0b013e3182771386. Review.

PMID:
23399939
19.

EcoGene 3.0.

Zhou J, Rudd KE.

Nucleic Acids Res. 2013 Jan;41(Database issue):D613-24. doi: 10.1093/nar/gks1235. Epub 2012 Nov 28.

20.

YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli.

Basturea GN, Dague DR, Deutscher MP, Rudd KE.

J Mol Biol. 2012 Jan 6;415(1):16-21. doi: 10.1016/j.jmb.2011.10.044. Epub 2011 Nov 4.

21.

Bacterial genome reengineering.

Zhou J, Rudd KE.

Methods Mol Biol. 2011;765:3-25. doi: 10.1007/978-1-61779-197-0_1.

PMID:
21815083
22.

Small membrane proteins found by comparative genomics and ribosome binding site models.

Hemm MR, Paul BJ, Schneider TD, Storz G, Rudd KE.

Mol Microbiol. 2008 Dec;70(6):1487-501. doi: 10.1111/j.1365-2958.2008.06495.x.

23.

Repression of small toxic protein synthesis by the Sib and OhsC small RNAs.

Fozo EM, Kawano M, Fontaine F, Kaya Y, Mendieta KS, Jones KL, Ocampo A, Rudd KE, Storz G.

Mol Microbiol. 2008 Dec;70(5):1076-93. doi: 10.1111/j.1365-2958.2008.06394.x. Epub 2008 Aug 14. Erratum in: Mol Microbiol. 2008 Dec;70(5):1305.

24.

Simulation of guided waves in complex piping geometries using the elastodynamic finite integration technique.

Rudd KE, Leonard KR, Bingham JP, Hinders MK.

J Acoust Soc Am. 2007 Mar;121(3):1449-58.

PMID:
17407882
25.

Identification and characterization of RsmE, the founding member of a new RNA base methyltransferase family.

Basturea GN, Rudd KE, Deutscher MP.

RNA. 2006 Mar;12(3):426-34. Epub 2006 Jan 23.

26.

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL.

Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.

28.

Anatomy of Escherichia coli ribosome binding sites.

Shultzaberger RK, Bucheimer RE, Rudd KE, Schneider TD.

J Mol Biol. 2001 Oct 12;313(1):215-28.

PMID:
11601857
29.

New tools for an old workhorse.

Rudd KE.

Nat Biotechnol. 2000 Dec;18(12):1241-2. No abstract available.

PMID:
11101797
30.
31.

Novel intergenic repeats of Escherichia coli K-12.

Rudd KE.

Res Microbiol. 1999 Nov-Dec;150(9-10):653-64. Review.

PMID:
10673004
32.

EcoGene: a genome sequence database for Escherichia coli K-12.

Rudd KE.

Nucleic Acids Res. 2000 Jan 1;28(1):60-4.

33.

Linkage map of Escherichia coli K-12, edition 10: the physical map.

Rudd KE.

Microbiol Mol Biol Rev. 1998 Sep;62(3):985-1019. Review.

34.

The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.

Cheng ZF, Zuo Y, Li Z, Rudd KE, Deutscher MP.

J Biol Chem. 1998 Jun 5;273(23):14077-80.

35.

Low molecular weight proteins: a challenge for post-genomic research.

Rudd KE, Humphery-Smith I, Wasinger VC, Bairoch A.

Electrophoresis. 1998 Apr;19(4):536-44.

PMID:
9588799
36.

The aquaporin-Z water channel gene of Escherichia coli: structure, organization and phylogeny.

Calamita G, Kempf B, Rudd KE, Bonhivers M, Kneip S, Bishai WR, Bremer E, Agre P.

Biol Cell. 1997 Aug;89(5-6):321-9.

PMID:
9468603
37.

A signal transducer for aerotaxis in Escherichia coli.

Bibikov SI, Biran R, Rudd KE, Parkinson JS.

J Bacteriol. 1997 Jun;179(12):4075-9.

38.

Immunochemical structure of the OmpD porin from Salmonella typhimurium.

Singh SP, Miller S, Williams YU, Rudd KE, Nikaido H.

Microbiology. 1996 Nov;142 ( Pt 11):3201-10.

PMID:
8969517
39.

Escherichia coli K-12 on the internet.

Rudd KE.

Trends Genet. 1996 Apr;12(4):156-7. No abstract available.

PMID:
8901421
40.

Sequencing and analysis of bacterial genomes.

Koonin EV, Mushegian AR, Rudd KE.

Curr Biol. 1996 Apr 1;6(4):404-16. Review.

41.

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli.

Tatusov RL, Mushegian AR, Bork P, Brown NP, Hayes WS, Borodovsky M, Rudd KE, Koonin EV.

Curr Biol. 1996 Mar 1;6(3):279-91.

42.

The second aconitase (AcnB) of Escherichia coli.

Bradbury AJ, Gruer MJ, Rudd KE, Guest JR.

Microbiology. 1996 Feb;142 ( Pt 2):389-400.

PMID:
8932712
43.

Two domains of superfamily I helicases may exist as separate proteins.

Koonin EV, Rudd KE.

Protein Sci. 1996 Jan;5(1):178-80.

44.

Protein sequence comparison at genome scale.

Koonin EV, Tatusov RL, Rudd KE.

Methods Enzymol. 1996;266:295-322.

PMID:
8743691
45.

Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications.

Koonin EV, Tatusov RL, Rudd KE.

Proc Natl Acad Sci U S A. 1995 Dec 5;92(25):11921-5.

46.

The gene for the longest known Escherichia coli protein is a member of helicase superfamily II.

Reuven NB, Koonin EV, Rudd KE, Deutscher MP.

J Bacteriol. 1995 Oct;177(19):5393-400.

47.

Detection of new genes in a bacterial genome using Markov models for three gene classes.

Borodovsky M, McIninch JD, Koonin EV, Rudd KE, Médigue C, Danchin A.

Nucleic Acids Res. 1995 Sep 11;23(17):3554-62.

48.

Identity of the Escherichia coli cls and nov genes.

Tropp BE, Ragolia L, Xia W, Dowhan W, Milkman R, Rudd KE, Ivanisević R, Savić DJ.

J Bacteriol. 1995 Sep;177(17):5155-7.

49.

Genetic map of Salmonella typhimurium, edition VIII.

Sanderson KE, Hessel A, Rudd KE.

Microbiol Rev. 1995 Jun;59(2):241-303. Review.

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