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Items: 22

1.

eIF2B activator prevents neurological defects caused by a chronic integrated stress response.

Wong YL, LeBon L, Basso AM, Kohlhaas KL, Nikkel AL, Robb HM, Donnelly-Roberts DL, Prakash J, Swensen AM, Rubinstein ND, Krishnan S, McAllister FE, Haste NV, O'Brien JJ, Roy M, Ireland A, Frost JM, Shi L, Riedmaier S, Martin K, Dart MJ, Sidrauski C.

Elife. 2019 Jan 9;8. pii: e42940. doi: 10.7554/eLife.42940.

2.

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.

Moffitt JR, Bambah-Mukku D, Eichhorn SW, Vaughn E, Shekhar K, Perez JD, Rubinstein ND, Hao J, Regev A, Dulac C, Zhuang X.

Science. 2018 Nov 16;362(6416). pii: eaau5324. doi: 10.1126/science.aau5324. Epub 2018 Nov 1.

3.

Correction to: A window into extreme longevity; the circulating metabolomic signature of the naked mole-rat, a mammal that shows negligible senescence.

Lewis KN, Rubinstein ND, Buffenstein R.

Geroscience. 2018 Jun;40(3):357-358. doi: 10.1007/s11357-018-0023-1.

4.

A window into extreme longevity; the circulating metabolomic signature of the naked mole-rat, a mammal that shows negligible senescence.

Lewis KN, Rubinstein ND, Buffenstein R.

Geroscience. 2018 Apr;40(2):105-121. doi: 10.1007/s11357-018-0014-2. Epub 2018 Apr 20. Erratum in: Geroscience. 2018 May 31;:.

5.

Functional circuit architecture underlying parental behaviour.

Kohl J, Babayan BM, Rubinstein ND, Autry AE, Marin-Rodriguez B, Kapoor V, Miyamishi K, Zweifel LS, Luo L, Uchida N, Dulac C.

Nature. 2018 Apr;556(7701):326-331. doi: 10.1038/s41586-018-0027-0. Epub 2018 Apr 11.

6.

Benign and tumor parenchyma metabolomic profiles affect compensatory renal growth in renal cell carcinoma surgical patients.

Rosenzweig B, Rubinstein ND, Reznik E, Shingarev R, Juluru K, Akin O, Hsieh JJ, Jaimes EA, Russo P, Susztak K, Coleman JA, Hakimi AA.

PLoS One. 2017 Jul 20;12(7):e0180350. doi: 10.1371/journal.pone.0180350. eCollection 2017.

7.

The Multipartite Mitochondrial Genome of Enteromyxum leei (Myxozoa): Eight Fast-Evolving Megacircles.

Yahalomi D, Haddas-Sasson M, Rubinstein ND, Feldstein T, Diamant A, Huchon D.

Mol Biol Evol. 2017 Jul 1;34(7):1551-1556. doi: 10.1093/molbev/msx072.

PMID:
28333349
8.

New Perspectives on Genomic Imprinting, an Essential and Multifaceted Mode of Epigenetic Control in the Developing and Adult Brain.

Perez JD, Rubinstein ND, Dulac C.

Annu Rev Neurosci. 2016 Jul 8;39:347-84. doi: 10.1146/annurev-neuro-061010-113708. Epub 2016 Apr 25. Review.

9.

Regulation of alternative splicing at the single-cell level.

Faigenbloom L, Rubinstein ND, Kloog Y, Mayrose I, Pupko T, Stein R.

Mol Syst Biol. 2015 Dec 28;11(12):845. doi: 10.15252/msb.20156278.

10.

Genomic insights into the evolutionary origin of Myxozoa within Cnidaria.

Chang ES, Neuhof M, Rubinstein ND, Diamant A, Philippe H, Huchon D, Cartwright P.

Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):14912-7. doi: 10.1073/pnas.1511468112. Epub 2015 Nov 16.

11.

Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain.

Perez JD, Rubinstein ND, Fernandez DE, Santoro SW, Needleman LA, Ho-Shing O, Choi JJ, Zirlinger M, Chen SK, Liu JS, Dulac C.

Elife. 2015 Jul 3;4:e07860. doi: 10.7554/eLife.07860.

12.

Deep sequencing of mixed total DNA without barcodes allows efficient assembly of highly plastic ascidian mitochondrial genomes.

Rubinstein ND, Feldstein T, Shenkar N, Botero-Castro F, Griggio F, Mastrototaro F, Delsuc F, Douzery EJ, Gissi C, Huchon D.

Genome Biol Evol. 2013;5(6):1185-99. doi: 10.1093/gbe/evt081.

13.

Evolutionary models accounting for layers of selection in protein-coding genes and their impact on the inference of positive selection.

Rubinstein ND, Doron-Faigenboim A, Mayrose I, Pupko T.

Mol Biol Evol. 2011 Dec;28(12):3297-308. doi: 10.1093/molbev/msr162. Epub 2011 Jun 20.

PMID:
21690564
14.

The operonic location of auto-transcriptional repressors is highly conserved in bacteria.

Rubinstein ND, Zeevi D, Oren Y, Segal G, Pupko T.

Mol Biol Evol. 2011 Dec;28(12):3309-18. doi: 10.1093/molbev/msr163. Epub 2011 Jun 20.

PMID:
21690561
15.

Epitopia: a web-server for predicting B-cell epitopes.

Rubinstein ND, Mayrose I, Martz E, Pupko T.

BMC Bioinformatics. 2009 Sep 14;10:287. doi: 10.1186/1471-2105-10-287.

16.

Evolutionary modeling of rate shifts reveals specificity determinants in HIV-1 subtypes.

Penn O, Stern A, Rubinstein ND, Dutheil J, Bacharach E, Galtier N, Pupko T.

PLoS Comput Biol. 2008 Nov;4(11):e1000214. doi: 10.1371/journal.pcbi.1000214. Epub 2008 Nov 7.

17.

A machine-learning approach for predicting B-cell epitopes.

Rubinstein ND, Mayrose I, Pupko T.

Mol Immunol. 2009 Feb;46(5):840-7. doi: 10.1016/j.molimm.2008.09.009. Epub 2008 Oct 22.

PMID:
18947876
18.

A likelihood framework to analyse phyletic patterns.

Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T.

Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3903-11. doi: 10.1098/rstb.2008.0177.

19.

Computational characterization of B-cell epitopes.

Rubinstein ND, Mayrose I, Halperin D, Yekutieli D, Gershoni JM, Pupko T.

Mol Immunol. 2008 Jul;45(12):3477-89. Epub 2007 Nov 26.

PMID:
18023478
20.

Pepitope: epitope mapping from affinity-selected peptides.

Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund NT, Bublil EM, Ruppin E, Sharan R, Gershoni JM, Martz E, Pupko T.

Bioinformatics. 2007 Dec 1;23(23):3244-6. Epub 2007 Oct 31.

PMID:
17977889
21.

Stepwise prediction of conformational discontinuous B-cell epitopes using the Mapitope algorithm.

Bublil EM, Freund NT, Mayrose I, Penn O, Roitburd-Berman A, Rubinstein ND, Pupko T, Gershoni JM.

Proteins. 2007 Jul 1;68(1):294-304.

PMID:
17427229
22.

Epitope mapping using combinatorial phage-display libraries: a graph-based algorithm.

Mayrose I, Shlomi T, Rubinstein ND, Gershoni JM, Ruppin E, Sharan R, Pupko T.

Nucleic Acids Res. 2007;35(1):69-78. Epub 2006 Dec 6.

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