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Items: 1 to 50 of 74

1.

Structural comparison of the vacuolar and Golgi V-ATPases from Saccharomyces cerevisiae.

Vasanthakumar T, Bueler SA, Wu D, Beilsten-Edmands V, Robinson CV, Rubinstein JL.

Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7272-7277. doi: 10.1073/pnas.1814818116. Epub 2019 Mar 25.

2.

Structure of a bacterial ATP synthase.

Guo H, Suzuki T, Rubinstein JL.

Elife. 2019 Feb 6;8. pii: e43128. doi: 10.7554/eLife.43128.

3.

Cooperative subunit dynamics modulate p97 function.

Huang R, Ripstein ZA, Rubinstein JL, Kay LE.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):158-167. doi: 10.1073/pnas.1815495116. Epub 2018 Dec 24.

4.

Structure of a functional obligate complex III2IV2 respiratory supercomplex from Mycobacterium smegmatis.

Wiseman B, Nitharwal RG, Fedotovskaya O, Schäfer J, Guo H, Kuang Q, Benlekbir S, Sjöstrand D, Ädelroth P, Rubinstein JL, Brzezinski P, Högbom M.

Nat Struct Mol Biol. 2018 Dec;25(12):1128-1136. doi: 10.1038/s41594-018-0160-3. Epub 2018 Dec 5.

PMID:
30518849
5.

Cryo-EM of ATP synthases.

Guo H, Rubinstein JL.

Curr Opin Struct Biol. 2018 Oct;52:71-79. doi: 10.1016/j.sbi.2018.08.005. Epub 2018 Sep 18. Review.

PMID:
30240940
6.

Reversible inhibition of the ClpP protease via an N-terminal conformational switch.

Vahidi S, Ripstein ZA, Bonomi M, Yuwen T, Mabanglo MF, Juravsky JB, Rizzolo K, Velyvis A, Houry WA, Vendruscolo M, Rubinstein JL, Kay LE.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6447-E6456. doi: 10.1073/pnas.1805125115. Epub 2018 Jun 25.

7.

Structure of the alternative complex III in a supercomplex with cytochrome oxidase.

Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB.

Nature. 2018 May;557(7703):123-126. doi: 10.1038/s41586-018-0061-y. Epub 2018 Apr 25.

8.

Band 3 function and dysfunction in a structural context.

Abbas YM, Toye AM, Rubinstein JL, Reithmeier RAF.

Curr Opin Hematol. 2018 May;25(3):163-170. doi: 10.1097/MOH.0000000000000418. Review.

PMID:
29438259
9.

Atomic model for the dimeric FO region of mitochondrial ATP synthase.

Guo H, Bueler SA, Rubinstein JL.

Science. 2017 Nov 17;358(6365):936-940. doi: 10.1126/science.aao4815. Epub 2017 Oct 26.

10.

Molecular basis of human CD22 function and therapeutic targeting.

Ereño-Orbea J, Sicard T, Cui H, Mazhab-Jafari MT, Benlekbir S, Guarné A, Rubinstein JL, Julien JP.

Nat Commun. 2017 Oct 2;8(1):764. doi: 10.1038/s41467-017-00836-6.

11.

Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.

Zhao J, Beyrakhova K, Liu Y, Alvarez CP, Bueler SA, Xu L, Xu C, Boniecki MT, Kanelis V, Luo ZQ, Cygler M, Rubinstein JL.

PLoS Pathog. 2017 Jun 1;13(6):e1006394. doi: 10.1371/journal.ppat.1006394. eCollection 2017 Jun.

12.

The RNF168 paralog RNF169 defines a new class of ubiquitylated histone reader involved in the response to DNA damage.

Kitevski-LeBlanc J, Fradet-Turcotte A, Kukic P, Wilson MD, Portella G, Yuwen T, Panier S, Duan S, Canny MD, van Ingen H, Arrowsmith CH, Rubinstein JL, Vendruscolo M, Durocher D, Kay LE.

Elife. 2017 Apr 13;6. pii: e23872. doi: 10.7554/eLife.23872.

13.

Structure of a AAA+ unfoldase in the process of unfolding substrate.

Ripstein ZA, Huang R, Augustyniak R, Kay LE, Rubinstein JL.

Elife. 2017 Apr 8;6. pii: e25754. doi: 10.7554/eLife.25754.

14.

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.

Punjani A, Rubinstein JL, Fleet DJ, Brubaker MA.

Nat Methods. 2017 Mar;14(3):290-296. doi: 10.1038/nmeth.4169. Epub 2017 Feb 6.

PMID:
28165473
15.

Cryo-EM Captures the Dynamics of Ion Channel Opening.

Rubinstein JL.

Cell. 2017 Jan 26;168(3):341-343. doi: 10.1016/j.cell.2017.01.011.

16.

Atomic model for the membrane-embedded VO motor of a eukaryotic V-ATPase.

Mazhab-Jafari MT, Rohou A, Schmidt C, Bueler SA, Benlekbir S, Robinson CV, Rubinstein JL.

Nature. 2016 Nov 3;539(7627):118-122. doi: 10.1038/nature19828. Epub 2016 Oct 24.

PMID:
27776355
17.

Structure of the Pseudomonas aeruginosa Type IVa Pilus Secretin at 7.4 Å.

Koo J, Lamers RP, Rubinstein JL, Burrows LL, Howell PL.

Structure. 2016 Oct 4;24(10):1778-1787. doi: 10.1016/j.str.2016.08.007.

18.

Processing of Cryo-EM Movie Data.

Ripstein ZA, Rubinstein JL.

Methods Enzymol. 2016;579:103-24. doi: 10.1016/bs.mie.2016.04.009. Epub 2016 Jun 1. Review.

PMID:
27572725
19.

Cryo-EM studies of the structure and dynamics of vacuolar-type ATPases.

Mazhab-Jafari MT, Rubinstein JL.

Sci Adv. 2016 Jul 22;2(7):e1600725. doi: 10.1126/sciadv.1600725. eCollection 2016 Jul. Review.

20.

YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase associated region and functional core of the 50S ribosomal subunit.

Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JL, Britton RA, Williamson JR, Ortega J.

Nucleic Acids Res. 2016 Sep 30;44(17):8442-55. doi: 10.1093/nar/gkw678. Epub 2016 Aug 2.

21.

The structural basis of modified nucleosome recognition by 53BP1.

Wilson MD, Benlekbir S, Fradet-Turcotte A, Sherker A, Julien JP, McEwan A, Noordermeer SM, Sicheri F, Rubinstein JL, Durocher D.

Nature. 2016 Aug 4;536(7614):100-3. Epub 2016 Jul 27.

PMID:
27462807
22.

Unfolding the mechanism of the AAA+ unfoldase VAT by a combined cryo-EM, solution NMR study.

Huang R, Ripstein ZA, Augustyniak R, Lazniewski M, Ginalski K, Kay LE, Rubinstein JL.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4190-9. doi: 10.1073/pnas.1603980113. Epub 2016 Jul 11.

23.

Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.

Schep DG, Zhao J, Rubinstein JL.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3245-50. doi: 10.1073/pnas.1521990113. Epub 2016 Mar 7.

24.

Validating maps from single particle electron cryomicroscopy.

Rosenthal PB, Rubinstein JL.

Curr Opin Struct Biol. 2015 Oct;34:135-44. doi: 10.1016/j.sbi.2015.07.002. Epub 2015 Nov 19. Review.

25.

Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.

Zhou A, Rohou A, Schep DG, Bason JV, Montgomery MG, Walker JE, Grigorieff N, Rubinstein JL.

Elife. 2015 Oct 6;4:e10180. doi: 10.7554/eLife.10180.

26.

Activity-Independent Discovery of Secondary Metabolites Using Chemical Elicitation and Cheminformatic Inference.

Pimentel-Elardo SM, Sørensen D, Ho L, Ziko M, Bueler SA, Lu S, Tao J, Moser A, Lee R, Agard D, Fairn G, Rubinstein JL, Shoichet BK, Nodwell JR.

ACS Chem Biol. 2015 Nov 20;10(11):2616-23. doi: 10.1021/acschembio.5b00612. Epub 2015 Sep 18.

27.

Structural Insights into KCTD Protein Assembly and Cullin3 Recognition.

Ji AX, Chu A, Nielsen TK, Benlekbir S, Rubinstein JL, Privé GG.

J Mol Biol. 2016 Jan 16;428(1):92-107. doi: 10.1016/j.jmb.2015.08.019. Epub 2015 Aug 31.

PMID:
26334369
28.

Alignment of cryo-EM movies of individual particles by optimization of image translations.

Rubinstein JL, Brubaker MA.

J Struct Biol. 2015 Nov;192(2):188-95. doi: 10.1016/j.jsb.2015.08.007. Epub 2015 Aug 19.

PMID:
26296328
29.

INDUCED SEISMICITY. High-rate injection is associated with the increase in U.S. mid-continent seismicity.

Weingarten M, Ge S, Godt JW, Bekins BA, Rubinstein JL.

Science. 2015 Jun 19;348(6241):1336-40. doi: 10.1126/science.aab1345.

30.

Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images.

Zhao J, Brubaker MA, Benlekbir S, Rubinstein JL.

J Struct Biol. 2015 Nov;192(2):209-15. doi: 10.1016/j.jsb.2015.06.014. Epub 2015 Jun 15.

PMID:
26087140
31.

Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase.

Zhao J, Benlekbir S, Rubinstein JL.

Nature. 2015 May 14;521(7551):241-5. doi: 10.1038/nature14365.

PMID:
25971514
32.

Vma9p need not be associated with the yeast V-ATPase for fully-coupled proton pumping activity in vitro.

Bueler SA, Rubinstein JL.

Biochemistry. 2015 Jan 27;54(3):853-8. doi: 10.1021/bi5013172. Epub 2015 Jan 14.

PMID:
25546637
33.

The study of vacuolar-type ATPases by single particle electron microscopy.

Zhao J, Rubinstein JL.

Biochem Cell Biol. 2014 Dec;92(6):460-6. doi: 10.1139/bcb-2014-0086. Epub 2014 Sep 3. Review.

PMID:
25350640
34.

Structural biology. Beyond blob-ology.

Smith MT, Rubinstein JL.

Science. 2014 Aug 8;345(6197):617-9. doi: 10.1126/science.1256358. Epub 2014 Aug 7. No abstract available.

PMID:
25104368
35.

Automated particle picking for low-contrast macromolecules in cryo-electron microscopy.

Langlois R, Pallesen J, Ash JT, Nam Ho D, Rubinstein JL, Frank J.

J Struct Biol. 2014 Apr;186(1):1-7. doi: 10.1016/j.jsb.2014.03.001. Epub 2014 Mar 6.

36.

Enzyme mechanisms: Flexibility leads to function.

Zhao J, Rubinstein JL.

Nat Chem. 2014 Mar;6(3):170-1. doi: 10.1038/nchem.1879. No abstract available.

PMID:
24557126
37.

Eukaryotic V-ATPase: novel structural findings and functional insights.

Marshansky V, Rubinstein JL, Grüber G.

Biochim Biophys Acta. 2014 Jun;1837(6):857-79. doi: 10.1016/j.bbabio.2014.01.018. Epub 2014 Feb 4. Review.

38.

Fabrication of carbon films with ∼ 500nm holes for cryo-EM with a direct detector device.

Marr CR, Benlekbir S, Rubinstein JL.

J Struct Biol. 2014 Jan;185(1):42-7. doi: 10.1016/j.jsb.2013.11.002. Epub 2013 Nov 21.

PMID:
24269484
39.

An autoinhibited structure of α-catenin and its implications for vinculin recruitment to adherens junctions.

Ishiyama N, Tanaka N, Abe K, Yang YJ, Abbas YM, Umitsu M, Nagar B, Bueler SA, Rubinstein JL, Takeichi M, Ikura M.

J Biol Chem. 2013 May 31;288(22):15913-25. doi: 10.1074/jbc.M113.453928. Epub 2013 Apr 15.

40.

TMaCS: a hybrid template matching and classification system for partially-automated particle selection.

Zhao J, Brubaker MA, Rubinstein JL.

J Struct Biol. 2013 Mar;181(3):234-42. doi: 10.1016/j.jsb.2012.12.010. Epub 2013 Jan 16.

PMID:
23333657
41.

The N termini of a-subunit isoforms are involved in signaling between vacuolar H+-ATPase (V-ATPase) and cytohesin-2.

Hosokawa H, Dip PV, Merkulova M, Bakulina A, Zhuang Z, Khatri A, Jian X, Keating SM, Bueler SA, Rubinstein JL, Randazzo PA, Ausiello DA, Grüber G, Marshansky V.

J Biol Chem. 2013 Feb 22;288(8):5896-913. doi: 10.1074/jbc.M112.409169. Epub 2013 Jan 3.

42.

Structure of the vacuolar-type ATPase from Saccharomyces cerevisiae at 11-Å resolution.

Benlekbir S, Bueler SA, Rubinstein JL.

Nat Struct Mol Biol. 2012 Dec;19(12):1356-62. doi: 10.1038/nsmb.2422. Epub 2012 Nov 11.

PMID:
23142977
43.

Single particle electron microscopy.

Lau WC, Rubinstein JL.

Methods Mol Biol. 2013;955:401-26. doi: 10.1007/978-1-62703-176-9_22.

PMID:
23132073
44.

Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM.

Baker LA, Watt IN, Runswick MJ, Walker JE, Rubinstein JL.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11675-80. doi: 10.1073/pnas.1204935109. Epub 2012 Jul 2.

45.

Adaptor protein self-assembly drives the control of a cullin-RING ubiquitin ligase.

Errington WJ, Khan MQ, Bueler SA, Rubinstein JL, Chakrabartty A, Privé GG.

Structure. 2012 Jul 3;20(7):1141-53. doi: 10.1016/j.str.2012.04.009. Epub 2012 May 24.

46.

Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase.

Lau WC, Rubinstein JL.

Nature. 2011 Dec 18;481(7380):214-8. doi: 10.1038/nature10699.

PMID:
22178924
47.

The polydispersity of αB-crystallin is rationalized by an interconverting polyhedral architecture.

Baldwin AJ, Lioe H, Hilton GR, Baker LA, Rubinstein JL, Kay LE, Benesch JL.

Structure. 2011 Dec 7;19(12):1855-63. doi: 10.1016/j.str.2011.09.015.

48.

Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy.

Henderson R, Chen S, Chen JZ, Grigorieff N, Passmore LA, Ciccarelli L, Rubinstein JL, Crowther RA, Stewart PL, Rosenthal PB.

J Mol Biol. 2011 Nov 11;413(5):1028-46. doi: 10.1016/j.jmb.2011.09.008. Epub 2011 Sep 12.

49.

Edged watershed segmentation: a semi-interactive algorithm for segmentation of low-resolution maps from electron cryomicroscopy.

Baker LA, Rubinstein JL.

J Struct Biol. 2011 Oct;176(1):127-32. doi: 10.1016/j.jsb.2011.06.012. Epub 2011 Jul 6.

PMID:
21763426
50.

Porphysome nanovesicles generated by porphyrin bilayers for use as multimodal biophotonic contrast agents.

Lovell JF, Jin CS, Huynh E, Jin H, Kim C, Rubinstein JL, Chan WC, Cao W, Wang LV, Zheng G.

Nat Mater. 2011 Apr;10(4):324-32. doi: 10.1038/nmat2986. Epub 2011 Mar 20.

PMID:
21423187

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