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Items: 1 to 50 of 68

1.

Whole-genome comparison of endogenous retrovirus segregation across wild and domestic host species populations.

Rivas-Carrillo SD, Pettersson ME, Rubin CJ, Jern P.

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):11012-11017. doi: 10.1073/pnas.1815056115. Epub 2018 Oct 8. Erratum in: Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12465.

2.

Analysis of porcine body size variation using re-sequencing data of miniature and large pigs.

Reimer C, Rubin CJ, Sharifi AR, Ha NT, Weigend S, Waldmann KH, Distl O, Pant SD, Fredholm M, Schlather M, Simianer H.

BMC Genomics. 2018 Sep 19;19(1):687. doi: 10.1186/s12864-018-5009-y.

3.

Changes in brain architecture are consistent with altered fear processing in domestic rabbits.

Brusini I, Carneiro M, Wang C, Rubin CJ, Ring H, Afonso S, Blanco-Aguiar JA, Ferrand N, Rafati N, Villafuerte R, Smedby Ö, Damberg P, Hallböök F, Fredrikson M, Andersson L.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):7380-7385. doi: 10.1073/pnas.1801024115. Epub 2018 Jun 25.

4.

A genomic map of clinal variation across the European rabbit hybrid zone.

Rafati N, Blanco-Aguiar JA, Rubin CJ, Sayyab S, Sabatino SJ, Afonso S, Feng C, Alves PC, Villafuerte R, Ferrand N, Andersson L, Carneiro M.

Mol Ecol. 2018 Mar;27(6):1457-1478. doi: 10.1111/mec.14494. Epub 2018 Feb 11.

PMID:
29359877
5.

Asian horses deepen the MSY phylogeny.

Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R, Neuditschko M, Rieder S, Velie B, Lindgren G, Rubin CJ, Schlötterer C, Rattei T, Brem G, Wallner B.

Anim Genet. 2018 Feb;49(1):90-93. doi: 10.1111/age.12635. Epub 2018 Jan 15.

PMID:
29333704
6.

Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants.

Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L, Webster MT.

Genome Biol Evol. 2018 Jan 1;10(1):276-290. doi: 10.1093/gbe/evy004.

7.

The evolutionary history of the DMRT3 'Gait keeper' haplotype.

Staiger EA, Almén MS, Promerová M, Brooks S, Cothran EG, Imsland F, Jäderkvist Fegraeus K, Lindgren G, Mehrabani Yeganeh H, Mikko S, Vega-Pla JL, Tozaki T, Rubin CJ, Andersson L.

Anim Genet. 2017 Oct;48(5):551-559. doi: 10.1111/age.12580. Epub 2017 Jul 25.

PMID:
28741731
8.

Y Chromosome Uncovers the Recent Oriental Origin of Modern Stallions.

Wallner B, Palmieri N, Vogl C, Rigler D, Bozlak E, Druml T, Jagannathan V, Leeb T, Fries R, Tetens J, Thaller G, Metzger J, Distl O, Lindgren G, Rubin CJ, Andersson L, Schaefer R, McCue M, Neuditschko M, Rieder S, Schlötterer C, Brem G.

Curr Biol. 2017 Jul 10;27(13):2029-2035.e5. doi: 10.1016/j.cub.2017.05.086. Epub 2017 Jun 29.

9.

Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate.

Feng C, Pettersson M, Lamichhaney S, Rubin CJ, Rafati N, Casini M, Folkvord A, Andersson L.

Elife. 2017 Jun 30;6. pii: e23907. doi: 10.7554/eLife.23907.

10.

Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus.

Carneiro M, Hu D, Archer J, Feng C, Afonso S, Chen C, Blanco-Aguiar JA, Garreau H, Boucher S, Ferreira PG, Ferrand N, Rubin CJ, Andersson L.

Genetics. 2017 Feb;205(2):955-965. doi: 10.1534/genetics.116.196667. Epub 2016 Dec 16.

11.

Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection.

Kjærner-Semb E, Ayllon F, Furmanek T, Wennevik V, Dahle G, Niemelä E, Ozerov M, Vähä JP, Glover KA, Rubin CJ, Wargelius A, Edvardsen RB.

BMC Genomics. 2016 Aug 11;17(1):610. doi: 10.1186/s12864-016-2867-z.

12.

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.

Rafati N, Andersson LS, Mikko S, Feng C, Raudsepp T, Pettersson J, Janecka J, Wattle O, Ameur A, Thyreen G, Eberth J, Huddleston J, Malig M, Bailey E, Eichler EE, Dalin G, Chowdary B, Andersson L, Lindgren G, Rubin CJ.

G3 (Bethesda). 2016 Jul 7;6(7):2213-23. doi: 10.1534/g3.116.029645.

13.

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, Rafati N, Pettersson M, Zhang H, Dainat J, Ekman D, Höppner M, Jern P, Martin M, Nystedt B, Liu X, Chen W, Liang X, Shi C, Fu Y, Ma K, Zhan X, Feng C, Gustafson U, Rubin CJ, Sällman Almén M, Blass M, Casini M, Folkvord A, Laikre L, Ryman N, Ming-Yuen Lee S, Xu X, Andersson L.

Elife. 2016 May 3;5. pii: e12081. doi: 10.7554/eLife.12081.

14.

Decreased fracture rate, pharmacogenetics and BMD response in 79 Swedish children with osteogenesis imperfecta types I, III and IV treated with Pamidronate.

Lindahl K, Kindmark A, Rubin CJ, Malmgren B, Grigelioniene G, Söderhäll S, Ljunggren Ö, Åström E.

Bone. 2016 Jun;87:11-8. doi: 10.1016/j.bone.2016.02.015. Epub 2016 Mar 5.

PMID:
26957348
15.

Second generation sequencing of microRNA in Human Bone Cells treated with Parathyroid Hormone or Dexamethasone.

Laxman N, Rubin CJ, Mallmin H, Nilsson O, Tellgren-Roth C, Kindmark A.

Bone. 2016 Mar;84:181-188. doi: 10.1016/j.bone.2015.12.053. Epub 2015 Dec 31.

PMID:
26748295
16.

Regulatory mutations in TBX3 disrupt asymmetric hair pigmentation that underlies Dun camouflage color in horses.

Imsland F, McGowan K, Rubin CJ, Henegar C, Sundström E, Berglund J, Schwochow D, Gustafson U, Imsland P, Lindblad-Toh K, Lindgren G, Mikko S, Millon L, Wade C, Schubert M, Orlando L, Penedo MC, Barsh GS, Andersson L.

Nat Genet. 2016 Feb;48(2):152-8. doi: 10.1038/ng.3475. Epub 2015 Dec 21.

17.

The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon (Salmo salar L.) Males.

Ayllon F, Kjærner-Semb E, Furmanek T, Wennevik V, Solberg MF, Dahle G, Taranger GL, Glover KA, Almén MS, Rubin CJ, Edvardsen RB, Wargelius A.

PLoS Genet. 2015 Nov 9;11(11):e1005628. doi: 10.1371/journal.pgen.1005628. eCollection 2015 Nov.

18.

Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta.

Lindahl K, Åström E, Rubin CJ, Grigelioniene G, Malmgren B, Ljunggren Ö, Kindmark A.

Eur J Hum Genet. 2015 Aug;23(8):1112. doi: 10.1038/ejhg.2015.129. No abstract available.

19.

Global miRNA expression and correlation with mRNA levels in primary human bone cells.

Laxman N, Rubin CJ, Mallmin H, Nilsson O, Pastinen T, Grundberg E, Kindmark A.

RNA. 2015 Aug;21(8):1433-43. doi: 10.1261/rna.049148.114. Epub 2015 Jun 15.

20.

Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene.

Dorshorst B, Henegar C, Liao X, Sällman Almén M, Rubin CJ, Ito S, Wakamatsu K, Stothard P, Van Doormaal B, Plastow G, Barsh GS, Andersson L.

PLoS One. 2015 Jun 4;10(6):e0128969. doi: 10.1371/journal.pone.0128969. eCollection 2015.

21.

Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits.

Carneiro M, Piorno V, Rubin CJ, Alves JM, Ferrand N, Alves PC, Andersson L.

Anim Genet. 2015 Aug;46(4):418-25. doi: 10.1111/age.12299. Epub 2015 May 22.

PMID:
25999142
22.

Genetic epidemiology, prevalence, and genotype-phenotype correlations in the Swedish population with osteogenesis imperfecta.

Lindahl K, Åström E, Rubin CJ, Grigelioniene G, Malmgren B, Ljunggren Ö, Kindmark A.

Eur J Hum Genet. 2015 Aug;23(8):1042-50. doi: 10.1038/ejhg.2015.81. Epub 2015 May 6. Erratum in: Eur J Hum Genet. 2015 Aug;23(8):1112.

23.

A genomic duplication is associated with ectopic eomesodermin expression in the embryonic chicken comb and two duplex-comb phenotypes.

Dorshorst B, Harun-Or-Rashid M, Bagherpoor AJ, Rubin CJ, Ashwell C, Gourichon D, Tixier-Boichard M, Hallböök F, Andersson L.

PLoS Genet. 2015 Mar 19;11(3):e1004947. doi: 10.1371/journal.pgen.1004947. eCollection 2015 Mar.

24.

Evolution of Darwin's finches and their beaks revealed by genome sequencing.

Lamichhaney S, Berglund J, Almén MS, Maqbool K, Grabherr M, Martinez-Barrio A, Promerová M, Rubin CJ, Wang C, Zamani N, Grant BR, Grant PR, Webster MT, Andersson L.

Nature. 2015 Feb 19;518(7539):371-5. doi: 10.1038/nature14181. Epub 2015 Feb 11.

PMID:
25686609
25.

Prehistoric genomes reveal the genetic foundation and cost of horse domestication.

Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AM, Stenderup J, Hoover CA, Rubin CJ, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T, Gilbert MT, Nielsen R, Excoffier L, Willerslev E, Shapiro B, Orlando L.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):E5661-9. doi: 10.1073/pnas.1416991111. Epub 2014 Dec 15.

26.

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Martinez Barrio A, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L.

Science. 2014 Aug 29;345(6200):1074-1079. doi: 10.1126/science.1253714.

27.

A cis-regulatory mutation of PDSS2 causes silky-feather in chickens.

Feng C, Gao Y, Dorshorst B, Song C, Gu X, Li Q, Li J, Liu T, Rubin CJ, Zhao Y, Wang Y, Fei J, Li H, Chen K, Qu H, Shu D, Ashwell C, Da Y, Andersson L, Hu X, Li N.

PLoS Genet. 2014 Aug 28;10(8):e1004576. doi: 10.1371/journal.pgen.1004576. eCollection 2014 Aug.

28.

Differentiation and phylogenetic relationships in Mycobacterium spp with special reference to the RNase P RNA gene rnpB.

Herrmann B, Stolt P, Abdeldaim G, Rubin CJ, Kirsebom LA, Thollesson M.

Curr Microbiol. 2014 Nov;69(5):634-9. doi: 10.1007/s00284-014-0630-8. Epub 2014 Jun 25.

PMID:
24962595
29.

ZBED6 modulates the transcription of myogenic genes in mouse myoblast cells.

Jiang L, Wallerman O, Younis S, Rubin CJ, Gilbert ER, Sundström E, Ghazal A, Zhang X, Wang L, Mikkelsen TS, Andersson G, Andersson L.

PLoS One. 2014 Apr 8;9(4):e94187. doi: 10.1371/journal.pone.0094187. eCollection 2014.

30.

The role of pleiotropy and linkage in genes affecting a sexual ornament and bone allocation in the chicken.

Johnsson M, Rubin CJ, Höglund A, Sahlqvist AS, Jonsson KB, Kerje S, Ekwall O, Kämpe O, Andersson L, Jensen P, Wright D.

Mol Ecol. 2014 May;23(9):2275-86. doi: 10.1111/mec.12723. Epub 2014 Apr 9.

PMID:
24655072
31.

Allele dependent silencing of collagen type I using small interfering RNAs targeting 3'UTR Indels - a novel therapeutic approach in osteogenesis imperfecta.

Lindahl K, Kindmark A, Laxman N, Åström E, Rubin CJ, Ljunggren Ö.

Int J Med Sci. 2013 Aug 13;10(10):1333-43. doi: 10.7150/ijms.5774. eCollection 2013.

32.

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E.

Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.

PMID:
23803765
33.

Resveratrol decreases noise-induced cyclooxygenase-2 expression in the rat cochlea.

Seidman MD, Tang W, Bai VU, Ahmad N, Jiang H, Media J, Patel N, Rubin CJ, Standring RT.

Otolaryngol Head Neck Surg. 2013 May;148(5):827-33. doi: 10.1177/0194599813475777. Epub 2013 Feb 4.

PMID:
23380763
34.

Strong signatures of selection in the domestic pig genome.

Rubin CJ, Megens HJ, Martinez Barrio A, Maqbool K, Sayyab S, Schwochow D, Wang C, Carlborg Ö, Jern P, Jørgensen CB, Archibald AL, Fredholm M, Groenen MA, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19529-36. doi: 10.1073/pnas.1217149109. Epub 2012 Nov 14.

35.

Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring.

Lamichhaney S, Martinez Barrio A, Rafati N, Sundström G, Rubin CJ, Gilbert ER, Berglund J, Wetterbom A, Laikre L, Webster MT, Grabherr M, Ryman N, Andersson L.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19345-50. doi: 10.1073/pnas.1216128109. Epub 2012 Nov 7.

36.

A sexual ornament in chickens is affected by pleiotropic alleles at HAO1 and BMP2, selected during domestication.

Johnsson M, Gustafson I, Rubin CJ, Sahlqvist AS, Jonsson KB, Kerje S, Ekwall O, Kämpe O, Andersson L, Jensen P, Wright D.

PLoS Genet. 2012;8(8):e1002914. doi: 10.1371/journal.pgen.1002914. Epub 2012 Aug 30.

37.

Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice.

Andersson LS, Larhammar M, Memic F, Wootz H, Schwochow D, Rubin CJ, Patra K, Arnason T, Wellbring L, Hjälm G, Imsland F, Petersen JL, McCue ME, Mickelson JR, Cothran G, Ahituv N, Roepstorff L, Mikko S, Vallstedt A, Lindgren G, Andersson L, Kullander K.

Nature. 2012 Aug 30;488(7413):642-6. doi: 10.1038/nature11399.

38.

The Rose-comb mutation in chickens constitutes a structural rearrangement causing both altered comb morphology and defective sperm motility.

Imsland F, Feng C, Boije H, Bed'hom B, Fillon V, Dorshorst B, Rubin CJ, Liu R, Gao Y, Gu X, Wang Y, Gourichon D, Zody MC, Zecchin W, Vieaud A, Tixier-Boichard M, Hu X, Hallböök F, Li N, Andersson L.

PLoS Genet. 2012 Jun;8(6):e1002775. doi: 10.1371/journal.pgen.1002775. Epub 2012 Jun 28.

39.

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens.

Nätt D, Rubin CJ, Wright D, Johnsson M, Beltéky J, Andersson L, Jensen P.

BMC Genomics. 2012 Feb 4;13:59. doi: 10.1186/1471-2164-13-59.

40.

A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken.

Dorshorst B, Molin AM, Rubin CJ, Johansson AM, Strömstedt L, Pham MH, Chen CF, Hallböök F, Ashwell C, Andersson L.

PLoS Genet. 2011 Dec;7(12):e1002412. doi: 10.1371/journal.pgen.1002412. Epub 2011 Dec 22.

41.

Allele-specific gene silencing in osteogenesis imperfecta.

Ljunggren O, Lindahl K, Rubin CJ, Kindmark A.

Endocr Dev. 2011;21:85-90. doi: 10.1159/000328133. Epub 2011 Aug 22. Review.

PMID:
21865757
42.

Netting neutrophils induce endothelial damage, infiltrate tissues, and expose immunostimulatory molecules in systemic lupus erythematosus.

Villanueva E, Yalavarthi S, Berthier CC, Hodgin JB, Khandpur R, Lin AM, Rubin CJ, Zhao W, Olsen SH, Klinker M, Shealy D, Denny MF, Plumas J, Chaperot L, Kretzler M, Bruce AT, Kaplan MJ.

J Immunol. 2011 Jul 1;187(1):538-52. doi: 10.4049/jimmunol.1100450. Epub 2011 May 25.

43.

Mast cells and neutrophils release IL-17 through extracellular trap formation in psoriasis.

Lin AM, Rubin CJ, Khandpur R, Wang JY, Riblett M, Yalavarthi S, Villanueva EC, Shah P, Kaplan MJ, Bruce AT.

J Immunol. 2011 Jul 1;187(1):490-500. doi: 10.4049/jimmunol.1100123. Epub 2011 May 23.

44.

COL1 C-propeptide cleavage site mutations cause high bone mass osteogenesis imperfecta.

Lindahl K, Barnes AM, Fratzl-Zelman N, Whyte MP, Hefferan TE, Makareeva E, Brusel M, Yaszemski MJ, Rubin CJ, Kindmark A, Roschger P, Klaushofer K, McAlister WH, Mumm S, Leikin S, Kessler E, Boskey AL, Ljunggren O, Marini JC.

Hum Mutat. 2011 Jun;32(6):598-609. doi: 10.1002/humu.21475. Epub 2011 Apr 7.

45.

ZBED6: The birth of a new transcription factor in the common ancestor of placental mammals.

Andersson L, Andersson G, Hjälm G, Jiang L, Lindblad-Toh K, Lindroth AM, Markljung E, Nyström AM, Rubin CJ, Sundström E.

Transcription. 2010 Nov;1(3):144-148. Epub 2010 Aug 17.

46.

The genetic architecture of domestication in the chicken: effects of pleiotropy and linkage.

Wright D, Rubin CJ, Martinez Barrio A, Schütz K, Kerje S, Brändström H, Kindmark A, Jensen P, Andersson L.

Mol Ecol. 2010 Dec;19(23):5140-56. doi: 10.1111/j.1365-294X.2010.04882.x. Epub 2010 Oct 29.

PMID:
21040053
47.

Efficacy and safety of muraglitazar: a double-blind, 24-week, dose-ranging study in patients with type 2 diabetes.

Rubin CJ, Viraswami-Appanna K, Fiedorek FT.

Diab Vasc Dis Res. 2009 Jul;6(3):205-15. doi: 10.1177/1479164109336048.

PMID:
20368213
48.

Coadministration of muraglitazar plus glyburide: improvement of glycaemic and lipid profiles in patients with type 2 diabetes.

Rubin CJ, De Pril V, Fiedorek FT.

Diab Vasc Dis Res. 2009 Apr;6(2):120-32. doi: 10.1177/1479164109336049.

PMID:
20368202
49.

Whole-genome resequencing reveals loci under selection during chicken domestication.

Rubin CJ, Zody MC, Eriksson J, Meadows JR, Sherwood E, Webster MT, Jiang L, Ingman M, Sharpe T, Ka S, Hallböök F, Besnier F, Carlborg O, Bed'hom B, Tixier-Boichard M, Jensen P, Siegel P, Lindblad-Toh K, Andersson L.

Nature. 2010 Mar 25;464(7288):587-91. doi: 10.1038/nature08832. Epub 2010 Mar 10.

PMID:
20220755
50.

Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickens.

Wright D, Boije H, Meadows JR, Bed'hom B, Gourichon D, Vieaud A, Tixier-Boichard M, Rubin CJ, Imsland F, Hallböök F, Andersson L.

PLoS Genet. 2009 Jun;5(6):e1000512. doi: 10.1371/journal.pgen.1000512. Epub 2009 Jun 12.

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