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Items: 50

1.

Multiple Links between HD-Zip Proteins and Hormone Networks.

Sessa G, Carabelli M, Possenti M, Morelli G, Ruberti I.

Int J Mol Sci. 2018 Dec 14;19(12). pii: E4047. doi: 10.3390/ijms19124047. Review.

2.

Multiple Pathways in the Control of the Shade Avoidance Response.

Sessa G, Carabelli M, Possenti M, Morelli G, Ruberti I.

Plants (Basel). 2018 Nov 17;7(4). pii: E102. doi: 10.3390/plants7040102. Review.

3.

Arabidopsis HD-Zip II proteins regulate the exit from proliferation during leaf development in canopy shade.

Carabelli M, Possenti M, Sessa G, Ruzza V, Morelli G, Ruberti I.

J Exp Bot. 2018 Nov 26;69(22):5419-5431. doi: 10.1093/jxb/ery331.

4.

Conservation of AtTZF1, AtTZF2, and AtTZF3 homolog gene regulation by salt stress in evolutionarily distant plant species.

D'Orso F, De Leonardis AM, Salvi S, Gadaleta A, Ruberti I, Cattivelli L, Morelli G, Mastrangelo AM.

Front Plant Sci. 2015 Jun 16;6:394. doi: 10.3389/fpls.2015.00394. eCollection 2015.

5.

Interplay of HD-Zip II and III transcription factors in auxin-regulated plant development.

Turchi L, Baima S, Morelli G, Ruberti I.

J Exp Bot. 2015 Aug;66(16):5043-53. doi: 10.1093/jxb/erv174. Epub 2015 Apr 23. Review.

PMID:
25911742
6.

The Arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress.

Ambrosone A, Batelli G, Nurcato R, Aurilia V, Punzo P, Bangarusamy DK, Ruberti I, Sassi M, Leone A, Costa A, Grillo S.

Plant Physiol. 2015 May;168(1):292-306. doi: 10.1104/pp.114.255802. Epub 2015 Mar 17.

7.

Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.

Baima S, Forte V, Possenti M, Peñalosa A, Leoni G, Salvi S, Felici B, Ruberti I, Morelli G.

Mol Plant. 2014 Jun;7(6):1006-1025. doi: 10.1093/mp/ssu051. Epub 2014 Apr 27.

8.

Dynamics of the shade-avoidance response in Arabidopsis.

Ciolfi A, Sessa G, Sassi M, Possenti M, Salvucci S, Carabelli M, Morelli G, Ruberti I.

Plant Physiol. 2013 Sep;163(1):331-53. doi: 10.1104/pp.113.221549. Epub 2013 Jul 26.

9.

Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.

Carabelli M, Turchi L, Ruzza V, Morelli G, Ruberti I.

Plant Signal Behav. 2013 Sep;8(9). pii: e25447. doi: 10.4161/psb.25447. Epub 2013 Jun 24.

10.

The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings.

Cifuentes-Esquivel N, Bou-Torrent J, Galstyan A, Gallemí M, Sessa G, Salla Martret M, Roig-Villanova I, Ruberti I, Martínez-García JF.

Plant J. 2013 Sep;75(6):989-1002. doi: 10.1111/tpj.12264. Epub 2013 Jul 26.

11.

Arabidopsis HD-Zip II transcription factors control apical embryo development and meristem function.

Turchi L, Carabelli M, Ruzza V, Possenti M, Sassi M, Peñalosa A, Sessa G, Salvi S, Forte V, Morelli G, Ruberti I.

Development. 2013 May;140(10):2118-29. doi: 10.1242/dev.092833. Epub 2013 Apr 11.

12.

Shedding light on auxin movement: light-regulation of polar auxin transport in the photocontrol of plant development.

Sassi M, Wang J, Ruberti I, Vernoux T, Xu J.

Plant Signal Behav. 2013 Mar;8(3):e23355. doi: 10.4161/psb.23355. Epub 2013 Jan 18. Review.

13.

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1- and PIN2-dependent auxin transport in Arabidopsis.

Sassi M, Lu Y, Zhang Y, Wang J, Dhonukshe P, Blilou I, Dai M, Li J, Gong X, Jaillais Y, Yu X, Traas J, Ruberti I, Wang H, Scheres B, Vernoux T, Xu J.

Development. 2012 Sep;139(18):3402-12. doi: 10.1242/dev.078212.

14.

Plant adaptation to dynamically changing environment: the shade avoidance response.

Ruberti I, Sessa G, Ciolfi A, Possenti M, Carabelli M, Morelli G.

Biotechnol Adv. 2012 Sep-Oct;30(5):1047-58. doi: 10.1016/j.biotechadv.2011.08.014. Epub 2011 Aug 24. Review.

PMID:
21888962
15.

The Arabidopsis homeodomain-leucine zipper II gene family: diversity and redundancy.

Ciarbelli AR, Ciolfi A, Salvucci S, Ruzza V, Possenti M, Carabelli M, Fruscalzo A, Sessa G, Morelli G, Ruberti I.

Plant Mol Biol. 2008 Nov;68(4-5):465-78. doi: 10.1007/s11103-008-9383-8. Epub 2008 Aug 30.

PMID:
18758690
16.

Embedding mRNA stability in correlation analysis of time-series gene expression data.

Farina L, De Santis A, Salvucci S, Morelli G, Ruberti I.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000141. doi: 10.1371/journal.pcbi.1000141.

17.

Collective behavior in gene regulation: post-transcriptional regulation and the temporal compartmentalization of cellular cycles.

Palumbo MC, Farina L, De Santis A, Giuliani A, Colosimo A, Morelli G, Ruberti I.

FEBS J. 2008 May;275(10):2364-71. doi: 10.1111/j.1742-4658.2008.06398.x. Epub 2008 Apr 10. Review.

18.

A novel regulatory circuit underlying plant response to canopy shade.

Carabelli M, Possenti M, Sessa G, Ciolfi A, Sassi M, Morelli G, Ruberti I.

Plant Signal Behav. 2008 Feb;3(2):137-9.

19.

Canopy shade causes a rapid and transient arrest in leaf development through auxin-induced cytokinin oxidase activity.

Carabelli M, Possenti M, Sessa G, Ciolfi A, Sassi M, Morelli G, Ruberti I.

Genes Dev. 2007 Aug 1;21(15):1863-8.

20.

Dynamic measure of gene co-regulation.

Farina L, De Santis A, Morelli G, Ruberti I.

IET Syst Biol. 2007 Jan;1(1):10-7.

PMID:
17370425
21.

A homeodomain leucine zipper gene from Craterostigma plantagineum regulates abscisic acid responsive gene expression and physiological responses.

Deng X, Phillips J, Bräutigam A, Engström P, Johannesson H, Ouwerkerk PB, Ruberti I, Salinas J, Vera P, Iannacone R, Meijer AH, Bartels D.

Plant Mol Biol. 2006 Jun;61(3):469-89.

PMID:
16830180
22.

Functional analysis of transcription factors by microparticle bombardment.

Ruberti I, Sessa G, Morelli G.

Methods Mol Biol. 2006;323:231-6.

PMID:
16739581
23.

A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis.

Sessa G, Carabelli M, Sassi M, Ciolfi A, Possenti M, Mittempergher F, Becker J, Morelli G, Ruberti I.

Genes Dev. 2005 Dec 1;19(23):2811-5.

24.

Modulation of phospholipid signaling by GLABRA2 in root-hair pattern formation.

Ohashi Y, Oka A, Rodrigues-Pousada R, Possenti M, Ruberti I, Morelli G, Aoyama T.

Science. 2003 May 30;300(5624):1427-30.

25.

Light and shade in the photocontrol of Arabidopsis growth.

Morelli G, Ruberti I.

Trends Plant Sci. 2002 Sep;7(9):399-404. Review.

PMID:
12234731
26.

Entopically additive expression of GLABRA2 alters the frequency and spacing of trichome initiation.

Ohashi Y, Oka A, Ruberti I, Morelli G, Aoyama T.

Plant J. 2002 Feb;29(3):359-69.

27.

The arabidopsis ATHB-8 HD-zip protein acts as a differentiation-promoting transcription factor of the vascular meristems.

Baima S, Possenti M, Matteucci A, Wisman E, Altamura MM, Ruberti I, Morelli G.

Plant Physiol. 2001 Jun;126(2):643-55.

28.

Negative autoregulation of the Arabidopsis homeobox gene ATHB-2.

Ohgishi M, Oka A, Morelli G, Ruberti I, Aoyama T.

Plant J. 2001 Feb;25(4):389-98.

29.

Shade avoidance responses. Driving auxin along lateral routes.

Morelli G, Ruberti I.

Plant Physiol. 2000 Mar;122(3):621-6. Review. No abstract available.

30.

Shade avoidance responses are mediated by the ATHB-2 HD-zip protein, a negative regulator of gene expression.

Steindler C, Matteucci A, Sessa G, Weimar T, Ohgishi M, Aoyama T, Morelli G, Ruberti I.

Development. 1999 Oct;126(19):4235-45.

31.

The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins.

Sessa G, Steindler C, Morelli G, Ruberti I.

Plant Mol Biol. 1998 Nov 1;38(4):609-22.

PMID:
9747806
32.

DNA-binding specificity of the homeodomain-leucine zipper domain.

Sessa G, Morelli G, Ruberti I.

J Mol Biol. 1997 Dec 5;274(3):303-9.

PMID:
9405140
33.

The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development.

Di Cristina M, Sessa G, Dolan L, Linstead P, Baima S, Ruberti I, Morelli G.

Plant J. 1996 Sep;10(3):393-402.

34.

Twilight-zone and canopy shade induction of the Athb-2 homeobox gene in green plants.

Carabelli M, Morelli G, Whitelam G, Ruberti I.

Proc Natl Acad Sci U S A. 1996 Apr 16;93(8):3530-5.

35.

The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana.

Baima S, Nobili F, Sessa G, Lucchetti S, Ruberti I, Morelli G.

Development. 1995 Dec;121(12):4171-82.

36.

Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.

Aoyama T, Dong CH, Wu Y, Carabelli M, Sessa G, Ruberti I, Morelli G, Chua NH.

Plant Cell. 1995 Nov;7(11):1773-85.

37.

A cDNA encoding Arabidopsis thaliana cytoplasmic ribosomal protein L18.

Baima S, Sessa G, Ruberti I, Morelli G.

Gene. 1995 Feb 14;153(2):171-4.

PMID:
7875584
38.
39.

The Arabidopsis Athb-2 and -4 genes are strongly induced by far-red-rich light.

Carabelli M, Sessa G, Baima S, Morelli G, Ruberti I.

Plant J. 1993 Sep;4(3):469-79.

40.

A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif.

Ruberti I, Sessa G, Lucchetti S, Morelli G.

EMBO J. 1991 Jul;10(7):1787-91.

41.

A class of gyrB mutants, substantially unaffected in DNA topology, suppresses the Escherichia coli K12 ftsZ84 mutation.

Ruberti I, Crescenzi F, Paolozzi L, Ghelardini P.

Mol Microbiol. 1991 May;5(5):1065-72.

PMID:
1720186
42.

Synchronous division induced in Escherichia coli K12 by phage Mu: analysis of DNA topology and gene expression during the cell cycle.

Ghelardini P, Lauri P, Ruberti I, Orlando V, Paolozzi L.

Res Microbiol. 1991 Feb-Apr;142(2-3):259-67.

PMID:
1656496
43.

Assembly of correctly spaced chromatin in a nuclear extract from Xenopus laevis oocytes.

Sessa G, Ruberti I.

Nucleic Acids Res. 1990 Sep 25;18(18):5449-55.

44.

Mu gem3 as a tool to investigate the influence of chromosome supercoiling on gene expression in Escherichia coli K12.

Bianchi E, Ruberti I, Ghelardini P, Paolozzi L.

FEMS Microbiol Lett. 1990 Jan 1;54(1-3):135-40.

PMID:
2138991
45.

Large scale isolation of nuclei from oocytes of Xenopus laevis.

Ruberti I, Beccari E, Bianchi E, Carnevali F.

Anal Biochem. 1989 Jul;180(1):177-80.

PMID:
2817341
46.

Mechanism of chromatin assembly in Xenopus oocytes.

Ruberti I, Worcel A.

J Mol Biol. 1986 Jun 5;189(3):457-76.

PMID:
3783682
47.

Nucleotide sequence of the L1 ribosomal protein gene of Xenopus laevis: remarkable sequence homology among introns.

Loreni F, Ruberti I, Bozzoni I, Pierandrei-Amaldi P, Amaldi F.

EMBO J. 1985 Dec 16;4(13A):3483-8.

48.

Chromatin-specific hypersensitive sites are assembled on a Xenopus histone gene injected into Xenopus oocytes.

Gargiulo G, Razvi F, Ruberti I, Mohr I, Worcel A.

J Mol Biol. 1985 Feb 5;181(3):333-49.

PMID:
4039007
49.

Chromatin assembly in Xenopus oocytes: in vitro studies.

Glikin GC, Ruberti I, Worcel A.

Cell. 1984 May;37(1):33-41.

PMID:
6327057
50.

Characterization of histone genes isolated from Xenopus laevis and Xenopus tropicalis genomic libraries.

Ruberti I, Fragapane P, Pierandrei-Amaldi P, Beccari E, Amaldi F, Bozzoni I.

Nucleic Acids Res. 1982 Dec 11;10(23):7543-59.

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