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Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction.

Belthangady C, Royer LA.

Nat Methods. 2019 Jul 8. doi: 10.1038/s41592-019-0458-z. [Epub ahead of print] Review.


The Metastasis Suppressor Protein Nme1 Is a Concentration-Dependent Modulator of Ca2+/Calmodulin-Dependent Protein Kinase II.

Royer L, Shangraw K, Herzog JJ, Pouvreau S, Marr MT 2nd, Paradis S.

Biochemistry. 2019 Jun 18;58(24):2710-2714. doi: 10.1021/acs.biochem.9b00121. Epub 2019 Jun 4.


38. À propos d’un cas de légionellose pulmonaire.

Parramore P, Royer L, Casiglia G, Vaquier C, Cudennec T.

Soins Gerontol. 2019 Mar - Apr;24(136):43-44. doi: 10.1016/j.sger.2019.01.010. French. No abstract available.


Content-aware image restoration: pushing the limits of fluorescence microscopy.

Weigert M, Schmidt U, Boothe T, Müller A, Dibrov A, Jain A, Wilhelm B, Schmidt D, Broaddus C, Culley S, Rocha-Martins M, Segovia-Miranda F, Norden C, Henriques R, Zerial M, Solimena M, Rink J, Tomancak P, Royer L, Jug F, Myers EW.

Nat Methods. 2018 Dec;15(12):1090-1097. doi: 10.1038/s41592-018-0216-7. Epub 2018 Nov 26.


A practical guide to adaptive light-sheet microscopy.

Royer LA, Lemon WC, Chhetri RK, Keller PJ.

Nat Protoc. 2018 Nov;13(11):2462-2500. doi: 10.1038/s41596-018-0043-4.


In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level.

McDole K, Guignard L, Amat F, Berger A, Malandain G, Royer LA, Turaga SC, Branson K, Keller PJ.

Cell. 2018 Oct 18;175(3):859-876.e33. doi: 10.1016/j.cell.2018.09.031. Epub 2018 Oct 11.


Evaluation of 2D and 3D ultrasound tracking algorithms and impact on ultrasound-guided liver radiotherapy margins.

De Luca V, Banerjee J, Hallack A, Kondo S, Makhinya M, Nouri D, Royer L, Cifor A, Dardenne G, Goksel O, Gooding MJ, Klink C, Krupa A, Le Bras A, Marchal M, Moelker A, Niessen WJ, Papiez BW, Rothberg A, Schnabel J, van Walsum T, Harris E, Lediju Bell MA, Tanner C.

Med Phys. 2018 Nov;45(11):4986-5003. doi: 10.1002/mp.13152. Epub 2018 Oct 1.


The Ras-like GTPase Rem2 is a potent inhibitor of calcium/calmodulin-dependent kinase II activity.

Royer L, Herzog JJ, Kenny K, Tzvetkova B, Cochrane JC, Marr MT 2nd, Paradis S.

J Biol Chem. 2018 Sep 21;293(38):14798-14811. doi: 10.1074/jbc.RA118.003560. Epub 2018 Aug 2.


Automatic aortic root segmentation and anatomical landmarks detection for TAVI procedure planning.

Lalys F, Esneault S, Castro M, Royer L, Haigron P, Auffret V, Tomasi J.

Minim Invasive Ther Allied Technol. 2019 Jun;28(3):157-164. doi: 10.1080/13645706.2018.1488734. Epub 2018 Jul 24.


Cellular aspect ratio and cell division mechanics underlie the patterning of cell progeny in diverse mammalian epithelia.

McKinley KL, Stuurman N, Royer LA, Schartner C, Castillo-Azofeifa D, Delling M, Klein OD, Vale RD.

Elife. 2018 Jun 13;7. pii: e36739. doi: 10.7554/eLife.36739.


Rem2 stabilizes intrinsic excitability and spontaneous firing in visual circuits.

Moore AR, Richards SE, Kenny K, Royer L, Chan U, Flavahan K, Van Hooser SD, Paradis S.

Elife. 2018 May 29;7. pii: e33092. doi: 10.7554/eLife.33092.


Rem2 signaling affects neuronal structure and function in part by regulation of gene expression.

Kenny K, Royer L, Moore AR, Chen X, Marr MT 2nd, Paradis S.

Mol Cell Neurosci. 2017 Dec;85:190-201. doi: 10.1016/j.mcn.2017.10.004. Epub 2017 Oct 21.


Hippocampal LTP and contextual learning require surface diffusion of AMPA receptors.

Penn AC, Zhang CL, Georges F, Royer L, Breillat C, Hosy E, Petersen JD, Humeau Y, Choquet D.

Nature. 2017 Sep 21;549(7672):384-388. doi: 10.1038/nature23658. Epub 2017 Sep 13.


Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.

Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ.

Nat Biotechnol. 2016 Dec;34(12):1267-1278. doi: 10.1038/nbt.3708. Epub 2016 Oct 31.


Real-time target tracking of soft tissues in 3D ultrasound images based on robust visual information and mechanical simulation.

Royer L, Krupa A, Dardenne G, Le Bras A, Marchand E, Marchal M.

Med Image Anal. 2017 Jan;35:582-598. doi: 10.1016/ Epub 2016 Sep 15.


Synthesis and Characterization of New Fluorinated Tetrazines Displaying a High Fluorescence Yield.

Guermazi R, Royer L, Galmiche L, Clavier G, Audebert P, Hedhli A.

J Fluoresc. 2016 Jul;26(4):1349-56. doi: 10.1007/s10895-016-1822-3. Epub 2016 May 30.


JAK2(V617I) results in cytokine hypersensitivity without causing an overt myeloproliferative disorder in a mouse transduction-transplantation model.

Brooks SA, Luty SB, Lai HY, Morse SJ, Nguyen TK, Royer LR, Agarwal A, Druker BJ, Fleischman AG.

Exp Hematol. 2016 Jan;44(1):24-9.e1. doi: 10.1016/j.exphem.2015.09.006. Epub 2015 Oct 13.


A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Patel A, Lee HO, Jawerth L, Maharana S, Jahnel M, Hein MY, Stoynov S, Mahamid J, Saha S, Franzmann TM, Pozniakovski A, Poser I, Maghelli N, Royer LA, Weigert M, Myers EW, Grill S, Drechsel D, Hyman AA, Alberti S.

Cell. 2015 Aug 27;162(5):1066-77. doi: 10.1016/j.cell.2015.07.047.


ClearVolume: open-source live 3D visualization for light-sheet microscopy.

Royer LA, Weigert M, Günther U, Maghelli N, Jug F, Sbalzarini IF, Myers EW.

Nat Methods. 2015 Jun;12(6):480-1. doi: 10.1038/nmeth.3372. No abstract available.


Microbial transformation of 8:2 fluorotelomer acrylate and methacrylate in aerobic soils.

Royer LA, Lee LS, Russell MH, Nies LF, Turco RF.

Chemosphere. 2015 Jun;129:54-61. doi: 10.1016/j.chemosphere.2014.09.077. Epub 2014 Oct 23.


The CSF3R T618I mutation causes a lethal neutrophilic neoplasia in mice that is responsive to therapeutic JAK inhibition.

Fleischman AG, Maxson JE, Luty SB, Agarwal A, Royer LR, Abel ML, MacManiman JD, Loriaux MM, Druker BJ, Tyner JW.

Blood. 2013 Nov 21;122(22):3628-31. doi: 10.1182/blood-2013-06-509976. Epub 2013 Sep 30.


Altered Ca2+ concentration, permeability and buffering in the myofibre Ca2+ store of a mouse model of malignant hyperthermia.

Manno C, Figueroa L, Royer L, Pouvreau S, Lee CS, Volpe P, Nori A, Zhou J, Meissner G, Hamilton SL, Ríos E.

J Physiol. 2013 Sep 15;591(18):4439-57. doi: 10.1113/jphysiol.2013.259572. Epub 2013 Jun 24.


Liver fibrosis evaluation using real-time shear wave elastography: applicability and diagnostic performance using methods without a gold standard.

Poynard T, Munteanu M, Luckina E, Perazzo H, Ngo Y, Royer L, Fedchuk L, Sattonnet F, Pais R, Lebray P, Rudler M, Thabut D, Ratziu V.

J Hepatol. 2013 May;58(5):928-35. doi: 10.1016/j.jhep.2012.12.021. Epub 2013 Jan 12.


Evaluation of a model for the removal of pharmaceuticals, personal care products, and hormones from wastewater.

Blair BD, Crago JP, Hedman CJ, Treguer RJ, Magruder C, Royer LS, Klaper RD.

Sci Total Environ. 2013 Feb 1;444:515-21. doi: 10.1016/j.scitotenv.2012.11.103. Epub 2013 Jan 4.


Brain region-specific immunolocalization of the lipolysis-stimulated lipoprotein receptor (LSR) and altered cholesterol distribution in aged LSR+/- mice.

Stenger C, Pinçon A, Hanse M, Royer L, Comte A, Koziel V, Olivier JL, Pillot T, Yen FT.

J Neurochem. 2012 Nov;123(4):467-76. doi: 10.1111/j.1471-4159.2012.07922.x. Epub 2012 Sep 28.


Network compression as a quality measure for protein interaction networks.

Royer L, Reimann M, Stewart AF, Schroeder M.

PLoS One. 2012;7(6):e35729. doi: 10.1371/journal.pone.0035729. Epub 2012 Jun 18.


Lipomatous hypertrophy of the interatrial septum: the typical echographic aspect is worth being known.

Royer L, Hans GA, Canivet JL, Brichant JF, Cremers E, Senard M.

Acta Anaesthesiol Belg. 2011;62(3):157-9.


Empowerment and commitment perceptions of community/public health nurses and their tenure intention.

Royer L.

Public Health Nurs. 2011 Nov-Dec;28(6):523-32. doi: 10.1111/j.1525-1446.2011.00947.x. Epub 2011 Apr 11.


Measurement of RyR permeability reveals a role of calsequestrin in termination of SR Ca(2+) release in skeletal muscle.

Sztretye M, Yi J, Figueroa L, Zhou J, Royer L, Allen P, Brum G, Ríos E.

J Gen Physiol. 2011 Aug;138(2):231-47. doi: 10.1085/jgp.201010592.


D4cpv-calsequestrin: a sensitive ratiometric biosensor accurately targeted to the calcium store of skeletal muscle.

Sztretye M, Yi J, Figueroa L, Zhou J, Royer L, Ríos E.

J Gen Physiol. 2011 Aug;138(2):211-29. doi: 10.1085/jgp.201010591.


Disruption of the murine procollagen C-proteinase enhancer 2 gene causes accumulation of pro-apoA-I and increased HDL levels.

Francone OL, Ishida BY, de la Llera-Moya M, Royer L, Happe C, Zhu J, Chalkey RJ, Schaefer P, Cox C, Burlingame A, Kane JP, Rothblat GH.

J Lipid Res. 2011 Nov;52(11):1974-83. doi: 10.1194/jlr.M016527. Epub 2011 Jul 19.


Whole blood genome-wide expression profiling and network analysis suggest MELAS master regulators.

Mende S, Royer L, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Schroeder M, Reichmann H, Storch A.

Neurol Res. 2011 Jul;33(6):638-55. doi: 10.1179/1743132810Y.0000000016.


Aldosterone production in human adrenocortical cells is stimulated by high-density lipoprotein 2 (HDL2) through increased expression of aldosterone synthase (CYP11B2).

Xing Y, Cohen A, Rothblat G, Sankaranarayanan S, Weibel G, Royer L, Francone OL, Rainey WE.

Endocrinology. 2011 Mar;152(3):751-63. doi: 10.1210/en.2010-1049. Epub 2011 Jan 14.


Hydrolysis of fluorotelomer compounds leading to fluorotelomer alcohol production during solvent extractions of soils.

Dasu K, Royer LA, Liu J, Lee LS.

Chemosphere. 2010 Nov;81(7):911-7. doi: 10.1016/j.chemosphere.2010.07.068.


Paradoxical buffering of calcium by calsequestrin demonstrated for the calcium store of skeletal muscle.

Royer L, Sztretye M, Manno C, Pouvreau S, Zhou J, Knollmann BC, Protasi F, Allen PD, Ríos E.

J Gen Physiol. 2010 Sep;136(3):325-38. doi: 10.1085/jgp.201010454. Epub 2010 Aug 16.


Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators.

Maisel M, Habisch HJ, Royer L, Herr A, Milosevic J, Hermann A, Liebau S, Brenner R, Schwarz J, Schroeder M, Storch A.

Exp Cell Res. 2010 Oct 15;316(17):2760-78. doi: 10.1016/j.yexcr.2010.06.012. Epub 2010 Jun 23.


A selective peroxisome proliferator-activated receptor alpha agonist, CP-900691, improves plasma lipids, lipoproteins, and glycemic control in diabetic monkeys.

Wagner JD, Shadoan MK, Zhang L, Ward GM, Royer LJ, Kavanagh K, Francone OL, Auerbach BJ, Harwood HJ Jr.

J Pharmacol Exp Ther. 2010 Jun;333(3):844-53. doi: 10.1124/jpet.110.166736. Epub 2010 Feb 26.


Synthesis and evaluation of novel alpha-heteroaryl-phenylpropanoic acid derivatives as PPARalpha/gamma dual agonists.

Casimiro-Garcia A, Bigge CF, Davis JA, Padalino T, Pulaski J, Ohren JF, McConnell P, Kane CD, Royer LJ, Stevens KA, Auerbach B, Collard W, McGregor C, Song K.

Bioorg Med Chem. 2009 Oct 15;17(20):7113-25. doi: 10.1016/j.bmc.2009.09.001. Epub 2009 Sep 6.


GoGene: gene annotation in the fast lane.

Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W300-4. doi: 10.1093/nar/gkp429. Epub 2009 May 22.


Deconstructing calsequestrin. Complex buffering in the calcium store of skeletal muscle.

Royer L, Ríos E.

J Physiol. 2009 Jul 1;587(Pt 13):3101-11. doi: 10.1113/jphysiol.2009.171934. Epub 2009 Apr 29. Review.


Indo-1 derivatives for local calcium sensing.

Bannwarth M, Correa IR, Sztretye M, Pouvreau S, Fellay C, Aebischer A, Royer L, Rois E, Johnsson K.

ACS Chem Biol. 2009 Mar 20;4(3):179-190. doi: 10.1021/cb800258g.


Molecular characterization of novel and selective peroxisome proliferator-activated receptor alpha agonists with robust hypolipidemic activity in vivo.

Kane CD, Stevens KA, Fischer JE, Haghpassand M, Royer LJ, Aldinger C, Landschulz KT, Zagouras P, Bagley SW, Hada W, Dullea R, Hayward CM, Francone OL.

Mol Pharmacol. 2009 Feb;75(2):296-306. doi: 10.1124/mol.108.051656. Epub 2008 Oct 29.


Gene mention normalization and interaction extraction with context models and sentence motifs.

Hakenberg J, Plake C, Royer L, Strobelt H, Leser U, Schroeder M.

Genome Biol. 2008;9 Suppl 2:S14. doi: 10.1186/gb-2008-9-s2-s14. Epub 2008 Sep 1.


The hydrophobic tunnel present in LOX-1 is essential for oxidized LDL recognition and binding.

Francone OL, Tu M, Royer LJ, Zhu J, Stevens K, Oleynek JJ, Lin Z, Shelley L, Sand T, Luo Y, Kane CD.

J Lipid Res. 2009 Mar;50(3):546-55. doi: 10.1194/jlr.M800474-JLR200. Epub 2008 Oct 9.


Evolution and modulation of intracellular calcium release during long-lasting, depleting depolarization in mouse muscle.

Royer L, Pouvreau S, Ríos E.

J Physiol. 2008 Oct 1;586(19):4609-29. doi: 10.1113/jphysiol.2008.157990. Epub 2008 Aug 7. Erratum in: J Physiol. 2008 Dec 15;586(Pt 24):6077.


Unraveling protein networks with power graph analysis.

Royer L, Reimann M, Andreopoulos B, Schroeder M.

PLoS Comput Biol. 2008 Jul 11;4(7):e1000108. doi: 10.1371/journal.pcbi.1000108.


Effects of modifications of the linker in a series of phenylpropanoic acid derivatives: Synthesis, evaluation as PPARalpha/gamma dual agonists, and X-ray crystallographic studies.

Casimiro-Garcia A, Bigge CF, Davis JA, Padalino T, Pulaski J, Ohren JF, McConnell P, Kane CD, Royer LJ, Stevens KA, Auerbach BJ, Collard WT, McGregor C, Fakhoury SA, Schaum RP, Zhou H.

Bioorg Med Chem. 2008 May 1;16(9):4883-907. doi: 10.1016/j.bmc.2008.03.043. Epub 2008 Mar 20.


Phospholipid transfer protein deficiency ameliorates diet-induced hypercholesterolemia and inflammation in mice.

Shelly L, Royer L, Sand T, Jensen H, Luo Y.

J Lipid Res. 2008 Apr;49(4):773-81. doi: 10.1194/jlr.M700336-JLR200. Epub 2008 Jan 14.


Ca(2+) sparks operated by membrane depolarization require isoform 3 ryanodine receptor channels in skeletal muscle.

Pouvreau S, Royer L, Yi J, Brum G, Meissner G, Ríos E, Zhou J.

Proc Natl Acad Sci U S A. 2007 Mar 20;104(12):5235-40. Epub 2007 Mar 14. Erratum in: Proc Natl Acad Sci U S A. 2007 Aug 14;104(33):13531.

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