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Items: 26

1.

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri A, Coppola G, Scuderi S, Wu F, Roychowdhury T, Liu F, Pochareddy S, Shin Y, Safi A, Song L, Zhu Y, Sousa AMM; PsychENCODE Consortium, Gerstein M, Crawford GE, Sestan N, Abyzov A, Vaccarino FM.

Science. 2018 Dec 14;362(6420). pii: eaat6720. doi: 10.1126/science.aat6720.

PMID:
30545853
2.

De novo genome and transcriptome analyses provide insights into the biology of the trematode human parasite Fasciolopsis buski.

Biswal DK, Roychowdhury T, Pandey P, Tandon V.

PLoS One. 2018 Oct 16;13(10):e0205570. doi: 10.1371/journal.pone.0205570. eCollection 2018.

3.

Site-specific amino acid substitution in dodecameric peptides determines the stability and unfolding of c-MYC quadruplex promoting apoptosis in cancer cells.

Sengupta P, Banerjee N, Roychowdhury T, Dutta A, Chattopadhyay S, Chatterjee S.

Nucleic Acids Res. 2018 Nov 2;46(19):9932-9950. doi: 10.1093/nar/gky824.

4.

Arsenic accumulation in paddy plants at different phases of pre-monsoon cultivation.

Chowdhury NR, Das R, Joardar M, Ghosh S, Bhowmick S, Roychowdhury T.

Chemosphere. 2018 Nov;210:987-997. doi: 10.1016/j.chemosphere.2018.07.041. Epub 2018 Jul 12.

PMID:
30208559
5.

Impact of arsenic contaminated groundwater used during domestic scale post harvesting of paddy crop in West Bengal: Arsenic partitioning in raw and parboiled whole grain.

Roy Chowdhury N, Ghosh S, Joardar M, Kar D, Roychowdhury T.

Chemosphere. 2018 Nov;211:173-184. doi: 10.1016/j.chemosphere.2018.07.128. Epub 2018 Jul 25.

PMID:
30071430
6.

Classification of pathogenic microbes using a minimal set of single nucleotide polymorphisms derived from whole genome sequences.

Roychowdhury T, Singh VK, Bhattacharya A.

Genomics. 2018 Feb 10. pii: S0888-7543(18)30092-2. doi: 10.1016/j.ygeno.2018.02.004. [Epub ahead of print]

PMID:
29432978
7.

Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.

Bae T, Tomasini L, Mariani J, Zhou B, Roychowdhury T, Franjic D, Pletikos M, Pattni R, Chen BJ, Venturini E, Riley-Gillis B, Sestan N, Urban AE, Abyzov A, Vaccarino FM.

Science. 2018 Feb 2;359(6375):550-555. doi: 10.1126/science.aan8690. Epub 2017 Dec 7.

8.

Role of microRNAs in senescence and its contribution to peripheral neuropathy in the arsenic exposed population of West Bengal, India.

Chatterjee D, Bandyopadhyay A, Sarma N, Basu S, Roychowdhury T, Roy SS, Giri AK.

Environ Pollut. 2018 Feb;233:596-603. doi: 10.1016/j.envpol.2017.09.063. Epub 2017 Nov 5.

PMID:
29107899
9.

Complex multifractal nature in Mycobacterium tuberculosis genome.

Mandal S, Roychowdhury T, Chirom K, Bhattacharya A, Brojen Singh RK.

Sci Rep. 2017 Apr 25;7:46395. doi: 10.1038/srep46395.

10.

Chelerythrine down regulates expression of VEGFA, BCL2 and KRAS by arresting G-Quadruplex structures at their promoter regions.

Jana J, Mondal S, Bhattacharjee P, Sengupta P, Roychowdhury T, Saha P, Kundu P, Chatterjee S.

Sci Rep. 2017 Jan 19;7:40706. doi: 10.1038/srep40706.

11.

Porous, High Capacity Coatings for Solid Phase Microextraction by Sputtering.

Diwan A, Singh B, Roychowdhury T, Yan D, Tedone L, Nesterenko PN, Paull B, Sevy ET, Shellie RA, Kaykhaii M, Linford MR.

Anal Chem. 2016 Feb 2;88(3):1593-600. doi: 10.1021/acs.analchem.5b03181. Epub 2016 Jan 19.

PMID:
26695887
12.

Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis.

Roychowdhury T, Mandal S, Bhattacharya A.

Sci Rep. 2015 Jul 28;5:12567. doi: 10.1038/srep12567.

13.

Microfabrication, separations, and detection by mass spectrometry on ultrathin-layer chromatography plates prepared via the low-pressure chemical vapor deposition of silicon nitride onto carbon nanotube templates.

Kanyal SS, Häbe TT, Cushman CV, Dhunna M, Roychowdhury T, Farnsworth PB, Morlock GE, Linford MR.

J Chromatogr A. 2015 Jul 24;1404:115-23. doi: 10.1016/j.chroma.2015.05.053. Epub 2015 May 28.

PMID:
26065571
14.

De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

Kumar M, Gantasala NP, Roychowdhury T, Thakur PK, Banakar P, Shukla RN, Jones MG, Rao U.

PLoS One. 2014 May 6;9(5):e96311. doi: 10.1371/journal.pone.0096311. eCollection 2014.

15.

Next-Generation Anchor Based Phylogeny (NexABP): constructing phylogeny from next-generation sequencing data.

Roychowdhury T, Vishnoi A, Bhattacharya A.

Sci Rep. 2013;3:2634. doi: 10.1038/srep02634.

16.

Genetic heterogeneity revealed by sequence analysis of Mycobacterium tuberculosis isolates from extra-pulmonary tuberculosis patients.

Das S, Roychowdhury T, Kumar P, Kumar A, Kalra P, Singh J, Singh S, Prasad HK, Bhattacharya A.

BMC Genomics. 2013 Jun 17;14:404. doi: 10.1186/1471-2164-14-404.

17.

Removal of As(III) and As(V) from water by copper oxide incorporated mesoporous alumina.

Pillewan P, Mukherjee S, Roychowdhury T, Das S, Bansiwal A, Rayalu S.

J Hazard Mater. 2011 Feb 15;186(1):367-75. doi: 10.1016/j.jhazmat.2010.11.008. Epub 2010 Nov 10.

PMID:
21186080
18.

Groundwater arsenic contamination in one of the 107 arsenic-affected blocks in West Bengal, India: Status, distribution, health effects and factors responsible for arsenic poisoning.

Roychowdhury T.

Int J Hyg Environ Health. 2010 Nov;213(6):414-27. doi: 10.1016/j.ijheh.2010.09.003. Epub 2010 Oct 16.

PMID:
20956086
19.

Status of groundwater arsenic contamination in the state of West Bengal, India: a 20-year study report.

Chakraborti D, Das B, Rahman MM, Chowdhury UK, Biswas B, Goswami AB, Nayak B, Pal A, Sengupta MK, Ahamed S, Hossain A, Basu G, Roychowdhury T, Das D.

Mol Nutr Food Res. 2009 May;53(5):542-51. doi: 10.1002/mnfr.200700517.

PMID:
19382148
20.

Impact of sedimentary arsenic through irrigated groundwater on soil, plant, crops and human continuum from Bengal delta: special reference to raw and cooked rice.

Roychowdhury T.

Food Chem Toxicol. 2008 Aug;46(8):2856-64. doi: 10.1016/j.fct.2008.05.019. Epub 2008 May 29. Erratum in: Food Chem Toxicol. 2009 Apr;47(4):906-7.

PMID:
18602205
21.

Intake of arsenic from water, food composites and excretion through urine, hair from a studied population in West Bengal, India.

Uchino T, Roychowdhury T, Ando M, Tokunaga H.

Food Chem Toxicol. 2006 Apr;44(4):455-61. Epub 2005 Sep 28.

PMID:
16198037
22.

Effect of arsenic-contaminated irrigation water on agricultural land soil and plants in West Bengal, India.

Roychowdhury T, Tokunaga H, Uchino T, Ando M.

Chemosphere. 2005 Feb;58(6):799-810.

PMID:
15621193
23.

Arsenic and other elements in hair, nails, and skin-scales of arsenic victims in West Bengal, India.

Samanta G, Sharma R, Roychowdhury T, Chakraborti D.

Sci Total Environ. 2004 Jun 29;326(1-3):33-47.

PMID:
15142763
25.

Arsenic and other heavy metals in soils from an arsenic-affected area of West Bengal, India.

Roychowdhury T, Uchino T, Tokunaga H, Ando M.

Chemosphere. 2002 Nov;49(6):605-18.

PMID:
12430648
26.

Survey of arsenic in food composites from an arsenic-affected area of West Bengal, India.

Roychowdhury T, Uchino T, Tokunaga H, Ando M.

Food Chem Toxicol. 2002 Nov;40(11):1611-21.

PMID:
12176088

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