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Items: 28

1.

Using life course charts to assess and compare trajectories of amphetamine type stimulant consumption in different user groups: a cross-sectional study.

Martens MS, Zurhold H, Rosenkranz M, O'Donnell A, Addison M, Spencer L, McGovern W, Gabrhelík R, Petruželka B, Rowicka M, Liebregts N, Degkwitz P, Kaner E, Verthein U.

Harm Reduct J. 2020 Jan 13;17(1):8. doi: 10.1186/s12954-019-0339-x.

2.

Stochasticity of replication forks' speeds plays a key role in the dynamics of DNA replication.

Yousefi R, Rowicka M.

PLoS Comput Biol. 2019 Dec 23;15(12):e1007519. doi: 10.1371/journal.pcbi.1007519. eCollection 2019 Dec.

3.

Understanding pathways to stimulant use: a mixed-methods examination of the individual, social and cultural factors shaping illicit stimulant use across Europe (ATTUNE): study protocol.

Rosenkranz M, O'Donnell A, Verthein U, Zurhold H, Addison M, Liebregts N, Rowicka M, Barták M, Petruželka B, Kaner EF, Martens MS.

BMJ Open. 2019 Aug 10;9(8):e029476. doi: 10.1136/bmjopen-2019-029476.

4.

Coevolution of Residues Provides Evidence of a Functional Heterodimer of 5-HT2AR and 5-HT2CR Involving Both Intracellular and Extracellular Domains.

Fongang B, Cunningham KA, Rowicka M, Kudlicki A.

Neuroscience. 2019 Aug 1;412:48-59. doi: 10.1016/j.neuroscience.2019.05.013. Epub 2019 Jun 1.

PMID:
31158438
5.

qDSB-Seq is a general method for genome-wide quantification of DNA double-strand breaks using sequencing.

Zhu Y, Biernacka A, Pardo B, Dojer N, Forey R, Skrzypczak M, Fongang B, Nde J, Yousefi R, Pasero P, Ginalski K, Rowicka M.

Nat Commun. 2019 May 24;10(1):2313. doi: 10.1038/s41467-019-10332-8.

6.

i-BLESS is an ultra-sensitive method for detection of DNA double-strand breaks.

Biernacka A, Zhu Y, Skrzypczak M, Forey R, Pardo B, Grzelak M, Nde J, Mitra A, Kudlicki A, Crosetto N, Pasero P, Rowicka M, Ginalski K.

Commun Biol. 2018 Oct 31;1:181. doi: 10.1038/s42003-018-0165-9. eCollection 2018.

7.

Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures.

Clouaire T, Rocher V, Lashgari A, Arnould C, Aguirrebengoa M, Biernacka A, Skrzypczak M, Aymard F, Fongang B, Dojer N, Iacovoni JS, Rowicka M, Ginalski K, Côté J, Legube G.

Mol Cell. 2018 Oct 18;72(2):250-262.e6. doi: 10.1016/j.molcel.2018.08.020. Epub 2018 Sep 27.

8.

Predicting proteome dynamics using gene expression data.

Kuchta K, Towpik J, Biernacka A, Kutner J, Kudlicki A, Ginalski K, Rowicka M.

Sci Rep. 2018 Sep 14;8(1):13866. doi: 10.1038/s41598-018-31752-4.

9.

Social networks and social functioning level among occupational therapy workshops and community-based support centers users.

Bronowski P, Sawicka M, Rowicka M, Bronowska M.

Psychiatr Pol. 2017 Feb 26;51(1):139-152. doi: 10.12740/PP/62080. Epub 2017 Feb 26. English, Polish.

10.

Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress.

Shi W, Vu T, Boucher D, Biernacka A, Nde J, Pandita RK, Straube J, Boyle GM, Al-Ejeh F, Nag P, Jeffery J, Harris JL, Bain AL, Grzelak M, Skrzypczak M, Mitra A, Dojer N, Crosetto N, Cloonan N, Becherel OJ, Finnie J, Skaar JR, Walkley CR, Pandita TK, Rowicka M, Ginalski K, Lane SW, Khanna KK.

Blood. 2017 May 4;129(18):2479-2492. doi: 10.1182/blood-2016-06-725093. Epub 2017 Mar 7.

11.

Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes.

Aymard F, Aguirrebengoa M, Guillou E, Javierre BM, Bugler B, Arnould C, Rocher V, Iacovoni JS, Biernacka A, Skrzypczak M, Ginalski K, Rowicka M, Fraser P, Legube G.

Nat Struct Mol Biol. 2017 Apr;24(4):353-361. doi: 10.1038/nsmb.3387. Epub 2017 Mar 6.

12.

Strategies for achieving high sequencing accuracy for low diversity samples and avoiding sample bleeding using illumina platform.

Mitra A, Skrzypczak M, Ginalski K, Rowicka M.

PLoS One. 2015 Apr 10;10(4):e0120520. doi: 10.1371/journal.pone.0120520. eCollection 2015. Erratum in: PLoS One. 2020 Jan 2;15(1):e0227431.

13.

Probabilistic approach to predicting substrate specificity of methyltransferases.

Szczepińska T, Kutner J, Kopczyński M, Pawłowski K, Dziembowski A, Kudlicki A, Ginalski K, Rowicka M.

PLoS Comput Biol. 2014 Mar 20;10(3):e1003514. doi: 10.1371/journal.pcbi.1003514. eCollection 2014 Mar.

14.

Modulation of gene expression regulated by the transcription factor NF-κB/RelA.

Li X, Zhao Y, Tian B, Jamaluddin M, Mitra A, Yang J, Rowicka M, Brasier AR, Kudlicki A.

J Biol Chem. 2014 Apr 25;289(17):11927-44. doi: 10.1074/jbc.M113.539965. Epub 2014 Feb 12.

15.

A probabilistic approach to learn chromatin architecture and accurate inference of the NF-κB/RelA regulatory network using ChIP-Seq.

Yang J, Mitra A, Dojer N, Fu S, Rowicka M, Brasier AR.

Nucleic Acids Res. 2013 Aug;41(15):7240-59. doi: 10.1093/nar/gkt493. Epub 2013 Jun 14.

16.

Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.

Crosetto N, Mitra A, Silva MJ, Bienko M, Dojer N, Wang Q, Karaca E, Chiarle R, Skrzypczak M, Ginalski K, Pasero P, Rowicka M, Dikic I.

Nat Methods. 2013 Apr;10(4):361-5. doi: 10.1038/nmeth.2408. Epub 2013 Mar 17.

17.

Comprehensive structural and substrate specificity classification of the Saccharomyces cerevisiae methyltransferome.

Wlodarski T, Kutner J, Towpik J, Knizewski L, Rychlewski L, Kudlicki A, Rowicka M, Dziembowski A, Ginalski K.

PLoS One. 2011;6(8):e23168. doi: 10.1371/journal.pone.0023168. Epub 2011 Aug 9.

18.

Comparison of pattern detection methods in microarray time series of the segmentation clock.

Dequéant ML, Ahnert S, Edelsbrunner H, Fink TM, Glynn EF, Hattem G, Kudlicki A, Mileyko Y, Morton J, Mushegian AR, Pachter L, Rowicka M, Shiu A, Sturmfels B, Pourquié O.

PLoS One. 2008 Aug 6;3(8):e2856. doi: 10.1371/journal.pone.0002856.

19.

The crystallographic fast Fourier transform. Recursive symmetry reduction.

Kudlicki A, Rowicka M, Otwinowski Z.

Acta Crystallogr A. 2007 Nov;63(Pt 6):465-80. Epub 2007 Oct 17.

PMID:
17940325
20.

High-resolution timing of cell cycle-regulated gene expression.

Rowicka M, Kudlicki A, Tu BP, Otwinowski Z.

Proc Natl Acad Sci U S A. 2007 Oct 23;104(43):16892-7. Epub 2007 Sep 7.

21.

SCEPTRANS: an online tool for analyzing periodic transcription in yeast.

Kudlicki A, Rowicka M, Otwinowski Z.

Bioinformatics. 2007 Jun 15;23(12):1559-61. Epub 2007 Mar 30.

PMID:
17400726
22.

Valosin-containing protein (p97) is a regulator of endoplasmic reticulum stress and of the degradation of N-end rule and ubiquitin-fusion degradation pathway substrates in mammalian cells.

Wójcik C, Rowicka M, Kudlicki A, Nowis D, McConnell E, Kujawa M, DeMartino GN.

Mol Biol Cell. 2006 Nov;17(11):4606-18. Epub 2006 Aug 16.

23.

Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.

Tu BP, Kudlicki A, Rowicka M, McKnight SL.

Science. 2005 Nov 18;310(5751):1152-8. Epub 2005 Oct 27. Erratum in: Science. 2006 Feb 17;311(5763):954.

24.

Coordinate transformations in modern crystallographic computing.

Rowicka M, Kudlicki A, Zelinka J, Otwinowski Z.

Acta Crystallogr A. 2004 Nov;60(Pt 6):542-9. Epub 2004 Oct 26.

PMID:
15507736
25.

The crystallographic fast Fourier transform. IV. FFT-asymmetric units in the reciprocal space.

Kudlicki A, Rowicka M, Otwinowski Z.

Acta Crystallogr A. 2004 Mar;60(Pt 2):146-52. Epub 2004 Feb 17.

PMID:
14966326
26.

The crystallographic fast Fourier transform. III. Centred lattices.

Rowicka M, Kudlicki A, Otwinowski Z.

Acta Crystallogr A. 2003 Mar;59(Pt 2):183-92. Epub 2003 Feb 26.

PMID:
12604858
27.

The crystallographic fast Fourier transform. II. One-step symmetry reduction.

Rowicka M, Kudlicki A, Otwinowski Z.

Acta Crystallogr A. 2003 Mar;59(Pt 2):172-82. Epub 2003 Feb 26.

PMID:
12604857
28.

The crystallographic fast Fourier transform. I. p3 symmetry.

Rowicka M, Kudlicki A, Otwinowski Z.

Acta Crystallogr A. 2002 Nov;58(Pt 6):574-9. Epub 2002 Nov 1.

PMID:
12388876

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