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When the levee breaks: a practical guide to sketching algorithms for processing the flood of genomic data.

Rowe WPM.

Genome Biol. 2019 Sep 13;20(1):199. doi: 10.1186/s13059-019-1809-x. Review.


Comments on More Sub-Subs Are Coming!

Rowe K, Rowe W.

Am J Med. 2019 Aug;132(8):e665. doi: 10.1016/j.amjmed.2019.04.019. No abstract available.


The diversity, evolution and ecology of Salmonella in venomous snakes.

Pulford CV, Wenner N, Redway ML, Rodwell EV, Webster HJ, Escudero R, Kröger C, Canals R, Rowe W, Lopez J, Hall N, Rowley PD, Timofte D, Harrison RA, Baker KS, Hinton JCD.

PLoS Negl Trop Dis. 2019 Jun 4;13(6):e0007169. doi: 10.1371/journal.pntd.0007169. eCollection 2019 Jun.


Streaming histogram sketching for rapid microbiome analytics.

Rowe WP, Carrieri AP, Alcon-Giner C, Caim S, Shaw A, Sim K, Kroll JS, Hall LJ, Pyzer-Knapp EO, Winn MD.

Microbiome. 2019 Mar 16;7(1):40. doi: 10.1186/s40168-019-0653-2.


Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD.

PLoS Biol. 2019 Jan 15;17(1):e3000059. doi: 10.1371/journal.pbio.3000059. eCollection 2019 Jan.


International phase I study protocol to develop a patient-reported outcome measure for adolescents and adults receiving gender-affirming treatments (the GENDER-Q).

Klassen AF, Kaur M, Johnson N, Kreukels BP, McEvenue G, Morrison SD, Mullender MG, Poulsen L, Ozer M, Rowe W, Satterwhite T, Savard K, Semple J, Sørensen JA, van de Grift TC, van der Meij-Ross M, Young-Afat D, Pusic AL.

BMJ Open. 2018 Oct 21;8(10):e025435. doi: 10.1136/bmjopen-2018-025435.


Quantitative analysis of competitive cytokine signaling predicts tissue thresholds for the propagation of macrophage activation.

Bagnall J, Boddington C, England H, Brignall R, Downton P, Alsoufi Z, Boyd J, Rowe W, Bennett A, Walker C, Adamson A, Patel NMX, O'Cualain R, Schmidt L, Spiller DG, Jackson DA, Müller W, Muldoon M, White MRH, Paszek P.

Sci Signal. 2018 Jul 24;11(540). pii: eaaf3998. doi: 10.1126/scisignal.aaf3998.


Brake iron dust inhalation intensifying hypertension.

Rowe WJ.

Int J Cardiol. 2018 Sep 1;266:261. doi: 10.1016/j.ijcard.2018.01.048. No abstract available.


Archetypal transcriptional blocks underpin yeast gene regulation in response to changes in growth conditions.

Talavera D, Kershaw CJ, Costello JL, Castelli LM, Rowe W, Sims PFG, Ashe MP, Grant CM, Pavitt GD, Hubbard SJ.

Sci Rep. 2018 May 21;8(1):7949. doi: 10.1038/s41598-018-26170-5.


Indexed variation graphs for efficient and accurate resistome profiling.

Rowe WPM, Winn MD.

Bioinformatics. 2018 Nov 1;34(21):3601-3608. doi: 10.1093/bioinformatics/bty387.


Temperature regulates NF-κB dynamics and function through timing of A20 transcription.

Harper CV, Woodcock DJ, Lam C, Garcia-Albornoz M, Adamson A, Ashall L, Rowe W, Downton P, Schmidt L, West S, Spiller DG, Rand DA, White MRH.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5243-E5249. doi: 10.1073/pnas.1803609115. Epub 2018 May 14.


Examination of marine and vegetable oil oxidation data from a multi-year, third-party database.

De Boer AA, Ismail A, Marshall K, Bannenberg G, Yan KL, Rowe WJ.

Food Chem. 2018 Jul 15;254:249-255. doi: 10.1016/j.foodchem.2018.01.180. Epub 2018 Feb 1.


Rapid Assessment of Site Specific DNA Methylation through Resistive Pulse Sensing.

Healey MJ, Rowe W, Siati S, Sivakumaran M, Platt M.

ACS Sens. 2018 Mar 23;3(3):655-660. doi: 10.1021/acssensors.7b00935. Epub 2018 Mar 14.


Direct Primary Care in 2015: A Survey with Selected Comparisons to 2005 Survey Data.

Rowe K, Rowe W, Umbehr J, Dong F, Ablah E.

Kans J Med. 2017 Feb 15;10(1):3-6. eCollection 2017 Feb.


Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa.

Ashton PM, Owen SV, Kaindama L, Rowe WPM, Lane CR, Larkin L, Nair S, Jenkins C, de Pinna EM, Feasey NA, Hinton JCD, Dallman TJ.

Genome Med. 2017 Oct 31;9(1):92. doi: 10.1186/s13073-017-0480-7.


Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses.

Costello JL, Kershaw CJ, Castelli LM, Talavera D, Rowe W, Sims PFG, Ashe MP, Grant CM, Hubbard SJ, Pavitt GD.

Genome Biol. 2017 Oct 27;18(1):201. doi: 10.1186/s13059-017-1338-4.


Positron Emission Tomography Assessment of the Intranasal Delivery Route for Orexin A.

Van de Bittner GC, Van de Bittner KC, Wey HY, Rowe W, Dharanipragada R, Ying X, Hurst W, Giovanni A, Alving K, Gupta A, Hoekman J, Hooker JM.

ACS Chem Neurosci. 2018 Feb 21;9(2):358-368. doi: 10.1021/acschemneuro.7b00357. Epub 2017 Nov 7.


Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells.

Brignall R, Cauchy P, Bevington SL, Gorman B, Pisco AO, Bagnall J, Boddington C, Rowe W, England H, Rich K, Schmidt L, Dyer NP, Travis MA, Ott S, Jackson DA, Cockerill PN, Paszek P.

J Immunol. 2017 Oct 15;199(8):2652-2667. doi: 10.4049/jimmunol.1602033. Epub 2017 Sep 13.


Comparison of ultra high performance supercritical fluid chromatography, ultra high performance liquid chromatography, and gas chromatography for the separation of synthetic cathinones.

Carnes S, O'Brien S, Szewczak A, Tremeau-Cayel L, Rowe WF, McCord B, Lurie IS.

J Sep Sci. 2017 Sep;40(17):3545-3556. doi: 10.1002/jssc.201700349. Epub 2017 Aug 14.


Detection of the florfenicol resistance gene floR in Chryseobacterium isolates from rainbow trout. Exception to the general rule?

Verner-Jeffreys DW, Brazier T, Perez RY, Ryder D, Card RM, Welch TJ, Hoare R, Ngo T, McLaren N, Ellis R, Bartie KL, Feist SW, Rowe WMP, Adams A, Thompson KD.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix015.


Overexpression of antibiotic resistance genes in hospital effluents over time.

Rowe WPM, Baker-Austin C, Verner-Jeffreys DW, Ryan JJ, Micallef C, Maskell DJ, Pearce GP.

J Antimicrob Chemother. 2017 Jun 1;72(6):1617-1623. doi: 10.1093/jac/dkx017.


The role of diode array ultraviolet detection for the identification of synthetic cathinones.

Rowe WF, Marginean I, Carnes S, Lurie IS.

Drug Test Anal. 2017 Oct;9(10):1512-1521. doi: 10.1002/dta.2163. Epub 2017 Mar 15.


Coronary artery disease and lunar catecholamine cardiomyopathy.

Rowe WJ.

Int J Cardiol. 2017 Mar 15;231:42-46. doi: 10.1016/j.ijcard.2016.10.052. Epub 2016 Nov 9. Review.


Design of a Miniaturized Meandered Line Antenna for UHF RFID Tags.

Rokunuzzaman M, Islam MT, Rowe WS, Kibria S, Jit Singh M, Misran N.

PLoS One. 2016 Aug 17;11(8):e0161293. doi: 10.1371/journal.pone.0161293. eCollection 2016.


Signal transduction controls heterogeneous NF-κB dynamics and target gene expression through cytokine-specific refractory states.

Adamson A, Boddington C, Downton P, Rowe W, Bagnall J, Lam C, Maya-Mendoza A, Schmidt L, Harper CV, Spiller DG, Rand DA, Jackson DA, White MR, Paszek P.

Nat Commun. 2016 Jul 6;7:12057. doi: 10.1038/ncomms12057.


Comparative metagenomics reveals a diverse range of antimicrobial resistance genes in effluents entering a river catchment.

Rowe W, Verner-Jeffreys DW, Baker-Austin C, Ryan JJ, Maskell DJ, Pearce GP.

Water Sci Technol. 2016;73(7):1541-9. doi: 10.2166/wst.2015.634.


Assessment of ultra high performance supercritical fluid chromatography as a separation technique for the analysis of seized drugs: Applicability to synthetic cannabinoids.

Breitenbach S, Rowe WF, McCord B, Lurie IS.

J Chromatogr A. 2016 Apr 1;1440:201-211. doi: 10.1016/j.chroma.2016.02.047. Epub 2016 Feb 17.


Neil Armstrong syndrome.

Rowe WJ.

Int J Cardiol. 2016 Apr 15;209:221-2. doi: 10.1016/j.ijcard.2015.11.003. Epub 2015 Nov 5. No abstract available.


Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p.

Kershaw CJ, Costello JL, Talavera D, Rowe W, Castelli LM, Sims PF, Grant CM, Ashe MP, Hubbard SJ, Pavitt GD.

Sci Rep. 2015 Oct 23;5:15518. doi: 10.1038/srep15518.


Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data.

Rowe W, Baker KS, Verner-Jeffreys D, Baker-Austin C, Ryan JJ, Maskell D, Pearce G.

PLoS One. 2015 Jul 21;10(7):e0133492. doi: 10.1371/journal.pone.0133492. eCollection 2015.


Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.

Daly GM, Leggett RM, Rowe W, Stubbs S, Wilkinson M, Ramirez-Gonzalez RH, Caccamo M, Bernal W, Heeney JL.

PLoS One. 2015 Jun 22;10(6):e0129059. doi: 10.1371/journal.pone.0129059. eCollection 2015.


Quantitative dynamic imaging of immune cell signalling using lentiviral gene transfer.

Bagnall J, Boddington C, Boyd J, Brignall R, Rowe W, Jones NA, Schmidt L, Spiller DG, White MR, Paszek P.

Integr Biol (Camb). 2015 Jun;7(6):713-25. doi: 10.1039/c5ib00067j. Epub 2015 May 20.


The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation.

Castelli LM, Talavera D, Kershaw CJ, Mohammad-Qureshi SS, Costello JL, Rowe W, Sims PF, Grant CM, Hubbard SJ, Ashe MP, Pavitt GD.

PLoS Genet. 2015 May 14;11(5):e1005233. doi: 10.1371/journal.pgen.1005233. eCollection 2015 May.


Multi-service highly sensitive rectifier for enhanced RF energy scavenging.

Shariati N, Rowe WS, Scott JR, Ghorbani K.

Sci Rep. 2015 May 7;5:9655. doi: 10.1038/srep09655.


The role of ultra high performance liquid chromatography with time of flight detection for the identification of synthetic cannabinoids in seized drugs.

Marginean I, Rowe WF, Lurie IS.

Forensic Sci Int. 2015 Apr;249:83-91. doi: 10.1016/j.forsciint.2015.01.013. Epub 2015 Jan 28.


Global mRNA selection mechanisms for translation initiation.

Costello J, Castelli LM, Rowe W, Kershaw CJ, Talavera D, Mohammad-Qureshi SS, Sims PF, Grant CM, Pavitt GD, Hubbard SJ, Ashe MP.

Genome Biol. 2015 Jan 5;16:10. doi: 10.1186/s13059-014-0559-z.


The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response.

Kershaw CJ, Costello JL, Castelli LM, Talavera D, Rowe W, Sims PF, Ashe MP, Hubbard SJ, Pavitt GD, Grant CM.

PLoS Genet. 2015 Jan 8;11(1):e1004903. doi: 10.1371/journal.pgen.1004903. eCollection 2015 Jan.


Efficacy of a unique omega-3 formulation on the correction of nutritional deficiency and its effects on cardiovascular disease risk factors in a randomized controlled VASCAZEN(®) REVEAL Trial.

Shaikh NA, Yantha J, Shaikh S, Rowe W, Laidlaw M, Cockerline C, Ali A, Holub B, Jackowski G.

Mol Cell Biochem. 2014 Nov;396(1-2):9-22. doi: 10.1007/s11010-014-2132-1. Epub 2014 Sep 4.


PDMS nanocomposites for heat transfer enhancement in microfluidic platforms.

Yi P, Awang RA, Rowe WS, Kalantar-zadeh K, Khoshmanesh K.

Lab Chip. 2014 Sep 7;14(17):3419-26. doi: 10.1039/c4lc00615a.


Quality factor effect on the wireless range of microstrip patch antenna strain sensors.

Daliri A, Galehdar A, Rowe WS, John S, Wang CH, Ghorbani K.

Sensors (Basel). 2014 Jan 2;14(1):595-605. doi: 10.3390/s140100595.


Puf3p induces translational repression of genes linked to oxidative stress.

Rowe W, Kershaw CJ, Castelli LM, Costello JL, Ashe MP, Grant CM, Sims PF, Pavitt GD, Hubbard SJ.

Nucleic Acids Res. 2014 Jan;42(2):1026-41. doi: 10.1093/nar/gkt948. Epub 2013 Oct 25.


Moon walkers and urban pollution.

Rowe WJ.

Am J Med. 2013 Jul;126(7):e1-2. doi: 10.1016/j.amjmed.2013.02.003. Epub 2013 May 16. No abstract available.


Implantable multilayer microstrip antenna for retinal prosthesis: antenna testing.

Permana H, Fang Q, Rowe WS.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:1679-82. doi: 10.1109/EMBC.2012.6346270.


Water maze testing to identify compounds for cognitive enhancement.

Rose GM, Rowe WB.

Curr Protoc Pharmacol. 2012 Dec;Chapter 5:Unit 5.63. doi: 10.1002/0471141755.ph0563s59.


Improving outcomes for at-risk youth: findings from the Prodigy Cultural Arts Program.

Rapp-Paglicci L, Stewart C, Rowe W.

J Evid Based Soc Work. 2012;9(5):512-23. doi: 10.1080/15433714.2011.581532.


Differential cellular and microbial responses to nano-/micron-scale titanium surface roughness induced by hydrogen peroxide treatment.

Daw AE, Kazi HA, Colombo JS, Rowe WG, Williams DW, Waddington RJ, Thomas DW, Moseley R.

J Biomater Appl. 2013 Jul;28(1):144-60. doi: 10.1177/0885328212441495. Epub 2012 Mar 28.


Correcting magnesium deficiencies may prolong life.

Rowe WJ.

Clin Interv Aging. 2012;7:51-4. doi: 10.2147/CIA.S28768. Epub 2012 Feb 16.


Fast implementation of sparse iterative covariance-based estimation for source localization.

Zhang Q, Abeida H, Xue M, Rowe W, Li J.

J Acoust Soc Am. 2012 Feb;131(2):1249-59. doi: 10.1121/1.3672656.


Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant.

Al-Balool HH, Weber D, Liu Y, Wade M, Guleria K, Nam PL, Clayton J, Rowe W, Coxhead J, Irving J, Elliott DJ, Hall AG, Santibanez-Koref M, Jackson MS.

Genome Res. 2011 Nov;21(11):1788-99. doi: 10.1101/gr.116442.110. Epub 2011 Sep 23.

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