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Items: 31

1.

Epistasis detectably alters correlations between genomic sites in a narrow parameter window.

Pedruzzi G, Rouzine IM.

PLoS One. 2019 May 31;14(5):e0214036. doi: 10.1371/journal.pone.0214036. eCollection 2019.

2.

Evolutionary footprint of epistasis.

Pedruzzi G, Barlukova A, Rouzine IM.

PLoS Comput Biol. 2018 Sep 17;14(9):e1006426. doi: 10.1371/journal.pcbi.1006426. eCollection 2018 Sep.

3.

Antigenic evolution of viruses in host populations.

Rouzine IM, Rozhnova G.

PLoS Pathog. 2018 Sep 12;14(9):e1007291. doi: 10.1371/journal.ppat.1007291. eCollection 2018 Sep.

4.

RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R.

Cell Host Microbe. 2017 Sep 13;22(3):420. doi: 10.1016/j.chom.2017.08.006. No abstract available.

5.

Variability in viral pathogenesis: modeling the dynamic of acute and persistent infections.

Lidsky PV, Andino R, Rouzine IM.

Curr Opin Virol. 2017 Apr;23:120-124. doi: 10.1016/j.coviro.2017.05.001. Epub 2017 May 25. Review.

6.

Conflicting Selection Pressures Will Constrain Viral Escape from Interfering Particles: Principles for Designing Resistance-Proof Antivirals.

Rast LI, Rouzine IM, Rozhnova G, Bishop L, Weinberger AD, Weinberger LS.

PLoS Comput Biol. 2016 May 6;12(5):e1004799. doi: 10.1371/journal.pcbi.1004799. eCollection 2016 May.

7.

RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence.

Xiao Y, Rouzine IM, Bianco S, Acevedo A, Goldstein EF, Farkov M, Brodsky L, Andino R.

Cell Host Microbe. 2016 Apr 13;19(4):493-503. doi: 10.1016/j.chom.2016.03.009. Erratum in: Cell Host Microbe. 2017 Sep 13;22(3):420.

8.

An evolutionary role for HIV latency in enhancing viral transmission.

Rouzine IM, Weinberger AD, Weinberger LS.

Cell. 2015 Feb 26;160(5):1002-1012. doi: 10.1016/j.cell.2015.02.017.

9.

A hardwired HIV latency program.

Razooky BS, Pai A, Aull K, Rouzine IM, Weinberger LS.

Cell. 2015 Feb 26;160(5):990-1001. doi: 10.1016/j.cell.2015.02.009.

10.

The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations.

Batorsky R, Sergeev RA, Rouzine IM.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003878. doi: 10.1371/journal.pcbi.1003878. eCollection 2014 Oct.

11.

Stochastic variability in HIV affects viral eradication.

Rouzine IM, Razooky BS, Weinberger LS.

Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13251-2. doi: 10.1073/pnas.1413362111. Epub 2014 Sep 8. No abstract available.

12.

Fifteen years later: hard and soft selection sweeps confirm a large population number for HIV in vivo.

Rouzine IM, Coffin JM, Weinberger LS.

PLoS Genet. 2014 Feb 20;10(2):e1004179. doi: 10.1371/journal.pgen.1004179. eCollection 2014 Feb. No abstract available.

13.

Reply to "Coadaptive stability of interfering particles with HIV-1 when there is an evolutionary conflict".

Rouzine IM, Weinberger LS.

J Virol. 2013 Sep;87(17):9960-2. doi: 10.1128/JVI.00932-13. No abstract available.

14.

Design requirements for interfering particles to maintain coadaptive stability with HIV-1.

Rouzine IM, Weinberger LS.

J Virol. 2013 Feb;87(4):2081-93. doi: 10.1128/JVI.02741-12. Epub 2012 Dec 5.

15.

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.

Good BH, Rouzine IM, Balick DJ, Hallatschek O, Desai MM.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4950-5. doi: 10.1073/pnas.1119910109. Epub 2012 Feb 27.

16.

Estimate of effective recombination rate and average selection coefficient for HIV in chronic infection.

Batorsky R, Kearney MF, Palmer SE, Maldarelli F, Rouzine IM, Coffin JM.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5661-6. doi: 10.1073/pnas.1102036108. Epub 2011 Mar 21.

17.

Multi-site adaptation in the presence of infrequent recombination.

Rouzine IM, Coffin JM.

Theor Popul Biol. 2010 May;77(3):189-204. doi: 10.1016/j.tpb.2010.02.001. Epub 2010 Feb 10.

18.

Interpreting the effect of vaccination on steady state infection in animals challenged with Simian immunodeficiency virus.

Sergeev RA, Batorsky RE, Coffin JM, Rouzine IM.

J Theor Biol. 2010 Apr 7;263(3):385-92. doi: 10.1016/j.jtbi.2009.12.018. Epub 2009 Dec 23.

19.

Model with two types of CTL regulation and experiments on CTL dynamics.

Sergeev RA, Batorsky RE, Rouzine IM.

J Theor Biol. 2010 Apr 7;263(3):369-84. doi: 10.1016/j.jtbi.2009.11.003. Epub 2009 Nov 12.

20.

The stochastic edge in adaptive evolution.

Brunet E, Rouzine IM, Wilke CO.

Genetics. 2008 May;179(1):603-20. doi: 10.1534/genetics.107.079319.

21.

Rapid adaptive amplification of preexisting variation in an RNA virus.

Dutta RN, Rouzine IM, Smith SD, Wilke CO, Novella IS.

J Virol. 2008 May;82(9):4354-62. doi: 10.1128/JVI.02446-07. Epub 2008 Feb 20.

22.

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation.

Rouzine IM, Brunet E, Wilke CO.

Theor Popul Biol. 2008 Feb;73(1):24-46. Epub 2007 Oct 22.

23.

Increasing sequence correlation limits the efficiency of recombination in a multisite evolution model.

Gheorghiu-Svirschevski S, Rouzine IM, Coffin JM.

Mol Biol Evol. 2007 Feb;24(2):574-86. Epub 2006 Nov 30.

PMID:
17138627
24.

Highly fit ancestors of a partly sexual haploid population.

Rouzine IM, Coffin JM.

Theor Popul Biol. 2007 Mar;71(2):239-50. Epub 2006 Sep 28.

25.

Two types of cytotoxic lymphocyte regulation explain kinetics of immune response to human immunodeficiency virus.

Rouzine IM, Sergeev RA, Glushtsov AI.

Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):666-71. Epub 2006 Jan 5.

26.

Evolution of human immunodeficiency virus under selection and weak recombination.

Rouzine IM, Coffin JM.

Genetics. 2005 May;170(1):7-18. Epub 2005 Mar 2.

27.

Link between immune response and parasite synchronization in malaria.

Rouzine IM, McKenzie FE.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3473-8. Epub 2003 Mar 5.

28.

The solitary wave of asexual evolution.

Rouzine IM, Wakeley J, Coffin JM.

Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):587-92. Epub 2003 Jan 13.

29.
30.

Linkage disequilibrium test implies a large effective population number for HIV in vivo.

Rouzine IM, Coffin JM.

Proc Natl Acad Sci U S A. 1999 Sep 14;96(19):10758-63.

31.

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