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Items: 1 to 50 of 69

1.

Exploring the diversity of Poaceae-infecting mastreviruses on Reunion Island using a viral metagenomics-based approach.

Claverie S, Ouattara A, Hoareau M, Filloux D, Varsani A, Roumagnac P, Martin DP, Lett JM, Lefeuvre P.

Sci Rep. 2019 Sep 3;9(1):12716. doi: 10.1038/s41598-019-49134-9.

2.

Evolution and ecology of plant viruses.

Lefeuvre P, Martin DP, Elena SF, Shepherd DN, Roumagnac P, Varsani A.

Nat Rev Microbiol. 2019 Oct;17(10):632-644. doi: 10.1038/s41579-019-0232-3. Epub 2019 Jul 16. Review.

PMID:
31312033
3.

High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago.

Scussel S, Candresse T, Marais A, Claverie S, Hoareau M, Azali HA, Verdin E, Tepfer M, Filloux D, Fernandez E, Roumagnac P, Robène I, Lefeuvre P, Jourda C, Roux-Cuvelier M, Lett JM.

Arch Virol. 2019 Aug;164(8):2193-2196. doi: 10.1007/s00705-019-04228-7. Epub 2019 May 23.

PMID:
31123961
4.

A New Prevalent Densovirus Discovered in Acari. Insight from Metagenomics in Viral Communities Associated with Two-Spotted Mite (Tetranychus urticae) Populations.

François S, Mutuel D, Duncan AB, Rodrigues LR, Danzelle C, Lefevre S, Santos I, Frayssinet M, Fernandez E, Filloux D, Roumagnac P, Froissart R, Ogliastro M.

Viruses. 2019 Mar 7;11(3). pii: E233. doi: 10.3390/v11030233.

5.

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools.

Susi H, Filloux D, Frilander MJ, Roumagnac P, Laine AL.

PeerJ. 2019 Jan 11;7:e6140. doi: 10.7717/peerj.6140. eCollection 2019.

6.

Nanopore-based detection and characterization of yam viruses.

Filloux D, Fernandez E, Loire E, Claude L, Galzi S, Candresse T, Winter S, Jeeva ML, Makeshkumar T, Martin DP, Roumagnac P.

Sci Rep. 2018 Dec 14;8(1):17879. doi: 10.1038/s41598-018-36042-7.

7.

The Westward Journey of Alfalfa Leaf Curl Virus.

Davoodi Z, Bejerman N, Richet C, Filloux D, Kumari SG, Chatzivassiliou EK, Galzi S, Julian C, Samarfard S, Trucco V, Giolitti F, Fiallo-Olivé E, Navas-Castillo J, Asaad N, Moukahel AR, Hijazi J, Mghandef S, Heydarnejad J, Massumi H, Varsani A, Dietzgen RG, Harkins GW, Martin DP, Roumagnac P.

Viruses. 2018 Oct 4;10(10). pii: E542. doi: 10.3390/v10100542.

8.

Notes on recombination and reassortment in multipartite/segmented viruses.

Varsani A, Lefeuvre P, Roumagnac P, Martin D.

Curr Opin Virol. 2018 Dec;33:156-166. doi: 10.1016/j.coviro.2018.08.013. Epub 2018 Sep 17. Review.

PMID:
30237098
9.

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand.

Richet C, Kraberger S, Filloux D, Bernardo P, Harkins GW, Martin DP, Roumagnac P, Varsani A.

Arch Virol. 2019 Jan;164(1):237-242. doi: 10.1007/s00705-018-4031-3. Epub 2018 Sep 15.

PMID:
30220037
10.

Viral Metagenomic-Based Screening of Sugarcane from Florida Reveals Occurrence of Six Sugarcane-Infecting Viruses and High Prevalence of Sugarcane yellow leaf virus.

Filloux D, Fernandez E, Comstock JC, Mollov D, Roumagnac P, Rott P.

Plant Dis. 2018 Nov;102(11):2317-2323. doi: 10.1094/PDIS-04-18-0581-RE. Epub 2018 Sep 10.

PMID:
30207899
11.

First Report of Alfalfa Leaf Curl Virus from Alfalfa in Iran.

Davoodi Z, Heydarnejad J, Massumi H, Richet C, Galzi S, Filloux D, Roumagnac P.

Plant Dis. 2018 Sep 10:PDIS04180571PDN. doi: 10.1094/PDIS-04-18-0571-PDN. [Epub ahead of print] No abstract available.

12.

Characterization of alfalfa virus F, a new member of the genus Marafivirus.

Nemchinov LG, François S, Roumagnac P, Ogliastro M, Hammond RW, Mollov DS, Filloux D.

PLoS One. 2018 Sep 4;13(9):e0203477. doi: 10.1371/journal.pone.0203477. eCollection 2018.

13.

First Report of Alfalfa Leaf Curl Virus Affecting Alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia.

Kumari SG, Moukahel AR, Richet C, Galzi S, Filloux D, Roumagnac P, Asaad N, Hijazi J, Mghandef S.

Plant Dis. 2018 Aug 10:PDIS03180404PDN. doi: 10.1094/PDIS-03-18-0404-PDN. [Epub ahead of print] No abstract available.

14.

From Spatial Metagenomics to Molecular Characterization of Plant Viruses: A Geminivirus Case Study.

Claverie S, Bernardo P, Kraberger S, Hartnady P, Lefeuvre P, Lett JM, Galzi S, Filloux D, Harkins GW, Varsani A, Martin DP, Roumagnac P.

Adv Virus Res. 2018;101:55-83. doi: 10.1016/bs.aivir.2018.02.003. Epub 2018 May 7. Review.

PMID:
29908594
15.

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.

Briddon RW, Martin DP, Roumagnac P, Navas-Castillo J, Fiallo-Olivé E, Moriones E, Lett JM, Zerbini FM, Varsani A.

Arch Virol. 2018 Sep;163(9):2587-2600. doi: 10.1007/s00705-018-3854-2. Epub 2018 May 9.

PMID:
29740680
16.

Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral Communities.

François S, Filloux D, Fernandez E, Ogliastro M, Roumagnac P.

Methods Mol Biol. 2018;1746:77-95. doi: 10.1007/978-1-4939-7683-6_7.

PMID:
29492888
17.

Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France.

Gallet R, Kraberger S, Filloux D, Galzi S, Fontes H, Martin DP, Varsani A, Roumagnac P.

Arch Virol. 2018 Mar;163(3):695-700. doi: 10.1007/s00705-017-3634-4. Epub 2017 Nov 20.

PMID:
29159590
18.

Increase in taxonomic assignment efficiency of viral reads in metagenomic studies.

François S, Filloux D, Frayssinet M, Roumagnac P, Martin DP, Ogliastro M, Froissart R.

Virus Res. 2018 Jan 15;244:230-234. doi: 10.1016/j.virusres.2017.11.011. Epub 2017 Nov 14.

PMID:
29154906
19.

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale.

Bernardo P, Charles-Dominique T, Barakat M, Ortet P, Fernandez E, Filloux D, Hartnady P, Rebelo TA, Cousins SR, Mesleard F, Cohez D, Yavercovski N, Varsani A, Harkins GW, Peterschmitt M, Malmstrom CM, Martin DP, Roumagnac P.

ISME J. 2018 Jan;12(1):173-184. doi: 10.1038/ismej.2017.155. Epub 2017 Oct 20.

20.

Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome.

Grisoni M, Marais A, Filloux D, Saison A, Faure C, Julian C, Theil S, Contreras S, Teycheney PY, Roumagnac P, Candresse T.

Arch Virol. 2017 Dec;162(12):3855-3861. doi: 10.1007/s00705-017-3540-9. Epub 2017 Sep 1.

PMID:
28864943
21.

A48 Inference of biological functionality in individual genomic secondary structural elements found within capulavirus genomes.

Hartnady P, Martin D, Muhire B, Roumagnac P.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.047. doi: 10.1093/ve/vew036.047. eCollection 2017 Mar. No abstract available.

22.

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion.

Boukari W, Alcalá-Briseño RI, Kraberger S, Fernandez E, Filloux D, Daugrois JH, Comstock JC, Lett JM, Martin DP, Varsani A, Roumagnac P, Polston JE, Rott PC.

Virol J. 2017 Jul 28;14(1):146. doi: 10.1186/s12985-017-0810-9.

23.

Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes.

Picard C, Dallot S, Brunker K, Berthier K, Roumagnac P, Soubeyrand S, Jacquot E, Thébaud G.

Annu Rev Phytopathol. 2017 Aug 4;55:139-160. doi: 10.1146/annurev-phyto-080516-035616. Epub 2017 May 19. Review.

PMID:
28525307
24.

Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso.

Palanga E, Martin DP, Galzi S, Zabré J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P, Filloux D.

Arch Virol. 2017 Jul;162(7):2149-2152. doi: 10.1007/s00705-017-3327-z. Epub 2017 Mar 23.

PMID:
28337544
25.

ICTV Virus Taxonomy Profile: Geminiviridae.

Zerbini FM, Briddon RW, Idris A, Martin DP, Moriones E, Navas-Castillo J, Rivera-Bustamante R, Roumagnac P, Varsani A, Ictv Report Consortium.

J Gen Virol. 2017 Feb;98(2):131-133. doi: 10.1099/jgv.0.000738.

26.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland.

Susi H, Laine AL, Filloux D, Kraberger S, Farkas K, Bernardo P, Frilander MJ, Martin DP, Varsani A, Roumagnac P.

Arch Virol. 2017 Jul;162(7):2041-2045. doi: 10.1007/s00705-017-3298-0. Epub 2017 Mar 10.

PMID:
28283818
27.

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Varsani A, Roumagnac P, Fuchs M, Navas-Castillo J, Moriones E, Idris A, Briddon RW, Rivera-Bustamante R, Murilo Zerbini F, Martin DP.

Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17.

PMID:
28213872
28.

Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso.

Palanga E, Filloux D, Martin DP, Fernandez E, Gargani D, Ferdinand R, Zabré J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P.

PLoS One. 2016 Oct 20;11(10):e0165188. doi: 10.1371/journal.pone.0165188. eCollection 2016.

29.

Discovery of parvovirus-related sequences in an unexpected broad range of animals.

François S, Filloux D, Roumagnac P, Bigot D, Gayral P, Martin DP, Froissart R, Ogliastro M.

Sci Rep. 2016 Sep 7;6:30880. doi: 10.1038/srep30880.

30.

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa.

Bernardo P, Muhire B, François S, Deshoux M, Hartnady P, Farkas K, Kraberger S, Filloux D, Fernandez E, Galzi S, Ferdinand R, Granier M, Marais A, Monge Blasco P, Candresse T, Escriu F, Varsani A, Harkins GW, Martin DP, Roumagnac P.

Virology. 2016 Jun;493:142-53. doi: 10.1016/j.virol.2016.03.016. Epub 2016 Mar 31.

31.

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem.

Dayaram A, Galatowitsch ML, Argüello-Astorga GR, van Bysterveldt K, Kraberger S, Stainton D, Harding JS, Roumagnac P, Martin DP, Lefeuvre P, Varsani A.

Infect Genet Evol. 2016 Apr;39:304-316. doi: 10.1016/j.meegid.2016.02.011. Epub 2016 Feb 10.

PMID:
26873065
32.

Prevalence of Sugarcane yellow leaf virus in Sugarcane-Producing Regions in Kenya Revealed by Reverse-Transcription Loop-Mediated Isothermal Amplification Method.

Amata RL, Fernandez E, Filloux D, Martin DP, Rott P, Roumagnac P.

Plant Dis. 2016 Feb;100(2):260-268. doi: 10.1094/PDIS-05-15-0602-RE. Epub 2015 Nov 25.

PMID:
30694143
33.

Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus.

Roumagnac P, Granier M, Bernardo P, Deshoux M, Ferdinand R, Galzi S, Fernandez E, Julian C, Abt I, Filloux D, Mesléard F, Varsani A, Blanc S, Martin DP, Peterschmitt M.

J Virol. 2015 Sep;89(18):9683-8. doi: 10.1128/JVI.00453-15. Epub 2015 Jun 24. Review.

34.

Plant Virus Metagenomics: Advances in Virus Discovery.

Roossinck MJ, Martin DP, Roumagnac P.

Phytopathology. 2015 Jun;105(6):716-27. doi: 10.1094/PHYTO-12-14-0356-RVW. Epub 2015 Jun 9. Review.

35.

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed.

Filloux D, Murrell S, Koohapitagtam M, Golden M, Julian C, Galzi S, Uzest M, Rodier-Goud M, D'Hont A, Vernerey MS, Wilkin P, Peterschmitt M, Winter S, Murrell B, Martin DP, Roumagnac P.

Virus Evol. 2015 May 26;1(1):vev002. eCollection 2015.

36.

Metagenomics Approaches Based on Virion-Associated Nucleic Acids (VANA): An Innovative Tool for Assessing Without A Priori Viral Diversity of Plants.

Filloux D, Dallot S, Delaunay A, Galzi S, Jacquot E, Roumagnac P.

Methods Mol Biol. 2015;1302:249-57. doi: 10.1007/978-1-4939-2620-6_18.

PMID:
25981259
37.

SNaPshot and CE-SSCP: Two Simple and Cost-Effective Methods to Reveal Genetic Variability Within a Virus Species.

Delaunay A, Dallot S, Filloux D, Dupuy V, Roumagnac P, Jacquot E.

Methods Mol Biol. 2015;1302:187-206. doi: 10.1007/978-1-4939-2620-6_15.

PMID:
25981256
38.

Identification of novel Bromus- and Trifolium-associated circular DNA viruses.

Kraberger S, Farkas K, Bernardo P, Booker C, Argüello-Astorga GR, Mesléard F, Martin DP, Roumagnac P, Varsani A.

Arch Virol. 2015 May;160(5):1303-11. doi: 10.1007/s00705-015-2358-6. Epub 2015 Feb 21.

PMID:
25701210
39.

A Novel Itera-Like Densovirus Isolated by Viral Metagenomics from the Sea Barley Hordeum marinum.

François S, Bernardo P, Filloux D, Roumagnac P, Yaverkovski N, Froissart R, Ogliastro M.

Genome Announc. 2014 Dec 4;2(6). pii: e01196-14. doi: 10.1128/genomeA.01196-14.

40.

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams.

Mambole IA, Bonheur L, Dumas LS, Filloux D, Gomez RM, Faure C, Lange D, Anzala F, Pavis C, Marais A, Roumagnac P, Candresse T, Teycheney PY.

Arch Virol. 2014 Dec;159(12):3421-6. doi: 10.1007/s00705-014-2211-3. Epub 2014 Sep 10.

PMID:
25204410
41.

Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.

Candresse T, Filloux D, Muhire B, Julian C, Galzi S, Fort G, Bernardo P, Daugrois JH, Fernandez E, Martin DP, Varsani A, Roumagnac P.

PLoS One. 2014 Jul 25;9(7):e102945. doi: 10.1371/journal.pone.0102945. eCollection 2014.

42.

First Report of Acidovorax avenae subsp. avenae Causing Sugarcane Red Stripe in Gabon.

Girard JC, Noëll J, Larbre F, Roumagnac P, Rott P.

Plant Dis. 2014 May;98(5):684. doi: 10.1094/PDIS-09-13-0914-PDN.

PMID:
30708509
43.

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics.

Vayssier-Taussat M, Albina E, Citti C, Cosson JF, Jacques MA, Lebrun MH, Le Loir Y, Ogliastro M, Petit MA, Roumagnac P, Candresse T.

Front Cell Infect Microbiol. 2014 Mar 5;4:29. doi: 10.3389/fcimb.2014.00029. eCollection 2014. Review.

44.

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct Badnavirus species.

Umber M, Filloux D, Muller E, Laboureau N, Galzi S, Roumagnac P, Iskra-Caruana ML, Pavis C, Teycheney PY, Seal SE.

Mol Plant Pathol. 2014 Oct;15(8):790-801. doi: 10.1111/mpp.12137. Epub 2014 Apr 15.

PMID:
24605894
45.

Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications.

Bernardo P, Golden M, Akram M, Naimuddin, Nadarajan N, Fernandez E, Granier M, Rebelo AG, Peterschmitt M, Martin DP, Roumagnac P.

Virus Res. 2013 Oct;177(1):35-45. doi: 10.1016/j.virusres.2013.07.006. Epub 2013 Jul 22.

46.

First Report of Sugarcane Leaf Scald in Gabon Caused by a Highly Virulent and Aggressive Strain of Xanthomonas albilineans.

Mensi I, Girard JC, Pieretti I, Larbre F, Roumagnac P, Royer M, Rott P.

Plant Dis. 2013 Jul;97(7):988. doi: 10.1094/PDIS-01-13-0044-PDN.

PMID:
30722583
47.

[Pathology and viral metagenomics, a recent history].

Bernardo P, Albina E, Eloit M, Roumagnac P.

Med Sci (Paris). 2013 May;29(5):501-8. doi: 10.1051/medsci/2013295013. Epub 2013 May 28. Review. French.

48.

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat.

Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L.

Microbiologyopen. 2012 Dec;1(4):349-61. doi: 10.1002/mbo3.37. Epub 2012 Sep 12.

49.

Recombination in eukaryotic single stranded DNA viruses.

Martin DP, Biagini P, Lefeuvre P, Golden M, Roumagnac P, Varsani A.

Viruses. 2011 Sep;3(9):1699-738. doi: 10.3390/v3091699. Epub 2011 Sep 13. Review.

50.

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar.

Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P.

PLoS Negl Trop Dis. 2011 Sep;5(9):e1319. doi: 10.1371/journal.pntd.0001319. Epub 2011 Sep 13.

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