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Items: 1 to 50 of 84

1.

Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships.

Albert PS, Zhang T, Semrau K, Rouillard JM, Kao YH, Wang CR, Danilova TV, Jiang J, Birchler JA.

Proc Natl Acad Sci U S A. 2019 Jan 17. pii: 201813957. doi: 10.1073/pnas.1813957116. [Epub ahead of print]

PMID:
30655344
2.

Introducing the H2020 AQUACROSS project: Knowledge, Assessment, and Management for AQUAtic Biodiversity and Ecosystem Services aCROSS EU policies.

Lago M, Boteler B, Rouillard J, Abhold K, Jähnig SC, Iglesias-Campos A, Delacámara G, Piet GJ, Hein T, Nogueira AJA, Lillebø AI, Strosser P, Robinson LA, De Wever A, O'Higgins T, Schlüter M, Török L, Reichert P, van Ham C, Villa F, Hugh M.

Sci Total Environ. 2019 Feb 20;652:320-329. doi: 10.1016/j.scitotenv.2018.10.076. Epub 2018 Oct 9.

3.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
4.

A morphogram for silica-witherite biomorphs and its application to microfossil identification in the early earth rock record.

Rouillard J, García-Ruiz JM, Gong J, van Zuilen MA.

Geobiology. 2018 May;16(3):279-296. doi: 10.1111/gbi.12278. Epub 2018 Feb 27.

5.

Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution.

Braz GT, He L, Zhao H, Zhang T, Semrau K, Rouillard JM, Torres GA, Jiang J.

Genetics. 2018 Feb;208(2):513-523. doi: 10.1534/genetics.117.300344. Epub 2017 Dec 13.

PMID:
29242292
6.

Protecting aquatic biodiversity in Europe: How much do EU environmental policies support ecosystem-based management?

Rouillard J, Lago M, Abhold K, Röschel L, Kafyeke T, Mattheiß V, Klimmek H.

Ambio. 2018 Feb;47(1):15-24. doi: 10.1007/s13280-017-0928-4. Epub 2017 Jun 13.

7.

Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.

Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

J Microbiol Methods. 2017 Aug;139:15-21. doi: 10.1016/j.mimet.2017.04.009. Epub 2017 Apr 23.

8.

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell.

Grealy A, Phillips M, Miller G, Gilbert MTP, Rouillard JM, Lambert D, Bunce M, Haile J.

Mol Phylogenet Evol. 2017 Apr;109:151-163. doi: 10.1016/j.ympev.2017.01.005. Epub 2017 Jan 9.

PMID:
28089793
9.

17th Century Variola Virus Reveals the Recent History of Smallpox.

Duggan AT, Perdomo MF, Piombino-Mascali D, Marciniak S, Poinar D, Emery MV, Buchmann JP, Duchêne S, Jankauskas R, Humphreys M, Golding GB, Southon J, Devault A, Rouillard JM, Sahl JW, Dutour O, Hedman K, Sajantila A, Smith GL, Holmes EC, Poinar HN.

Curr Biol. 2016 Dec 19;26(24):3407-3412. doi: 10.1016/j.cub.2016.10.061. Epub 2016 Dec 8.

10.

The phylogenetic affinities of the extinct glyptodonts.

Delsuc F, Gibb GC, Kuch M, Billet G, Hautier L, Southon J, Rouillard JM, Fernicola JC, Vizcaíno SF, MacPhee RD, Poinar HN.

Curr Biol. 2016 Feb 22;26(4):R155-6. doi: 10.1016/j.cub.2016.01.039.

11.

Methods for the preparation of large quantities of complex single-stranded oligonucleotide libraries.

Murgha YE, Rouillard JM, Gulari E.

PLoS One. 2014 Apr 14;9(4):e94752. doi: 10.1371/journal.pone.0094752. eCollection 2014.

12.

Ancient whole genome enrichment using baits built from modern DNA.

Enk JM, Devault AM, Kuch M, Murgha YE, Rouillard JM, Poinar HN.

Mol Biol Evol. 2014 May;31(5):1292-4. doi: 10.1093/molbev/msu074. Epub 2014 Feb 13.

PMID:
24531081
13.

Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, Earn DJ, Dewitte S, Rouillard JM, Grupe G, Wiechmann I, Bliska JB, Keim PS, Scholz HC, Holmes EC, Poinar H.

Lancet Infect Dis. 2014 Apr;14(4):319-26. doi: 10.1016/S1473-3099(13)70323-2. Epub 2014 Jan 28.

PMID:
24480148
14.

Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries.

Murgha Y, Beliveau B, Semrau K, Schwartz D, Wu CT, Gulari E, Rouillard JM.

Biotechniques. 2015 Jun 1;58(6):301-7. doi: 10.2144/000114298. eCollection 2015 Jun.

15.

Quantitative PCR as a predictor of aligned ancient DNA read counts following targeted enrichment.

Enk J, Rouillard JM, Poinar H.

Biotechniques. 2013 Dec;55(6):300-9. doi: 10.2144/000114114.

PMID:
24344679
16.

Detection and characterization of human pathogenic viruses circulating in community wastewater using multi target microarrays and polymerase chain reaction.

Wong MV, Hashsham SA, Gulari E, Rouillard JM, Aw TG, Rose JB.

J Water Health. 2013 Dec;11(4):659-70. doi: 10.2166/wh.2013.322.

PMID:
24334840
17.

From design to screening: a new antimicrobial peptide discovery pipeline.

Guralp SA, Murgha YE, Rouillard JM, Gulari E.

PLoS One. 2013;8(3):e59305. doi: 10.1371/journal.pone.0059305. Epub 2013 Mar 19.

18.

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes.

Beliveau BJ, Joyce EF, Apostolopoulos N, Yilmaz F, Fonseka CY, McCole RB, Chang Y, Li JB, Senaratne TN, Williams BR, Rouillard JM, Wu CT.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21301-6. doi: 10.1073/pnas.1213818110. Epub 2012 Dec 11.

19.

Target concentration dependence of DNA melting temperature on oligonucleotide microarrays.

Ozel AB, Srivannavit O, Rouillard JM, Gulari AE.

Biotechnol Prog. 2012 Mar-Apr;28(2):556-66. doi: 10.1002/btpr.1505. Epub 2012 Jan 24.

20.

Development of methods for quantitative comparison of pooled shRNAs by mass sequencing.

Hoshiyama H, Tang J, Batten K, Xiao G, Rouillard JM, Shay JW, Xie Y, Wright WE.

J Biomol Screen. 2012 Feb;17(2):258-65. doi: 10.1177/1087057111423101. Epub 2011 Sep 28.

PMID:
21956173
21.

Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli.

Minty JJ, Lesnefsky AA, Lin F, Chen Y, Zaroff TA, Veloso AB, Xie B, McConnell CA, Ward RJ, Schwartz DR, Rouillard JM, Gao Y, Gulari E, Lin XN.

Microb Cell Fact. 2011 Mar 25;10:18. doi: 10.1186/1475-2859-10-18.

22.

OligoArrayDb: pangenomic oligonucleotide microarray probe sets database.

Rouillard JM, Gulari E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D938-41. doi: 10.1093/nar/gkn761. Epub 2008 Oct 23.

23.

In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.

Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2008 Apr;74(7):2200-9. doi: 10.1128/AEM.01962-07. Epub 2008 Feb 1.

24.

Cytophobic surface modification of microfluidic arrays for in situ parallel peptide synthesis and cell adhesion assays.

Mandal S, Rouillard JM, Srivannavit O, Gulari E.

Biotechnol Prog. 2007 Jul-Aug;23(4):972-8. Epub 2007 Jul 3.

25.

Colloids with high-definition surface structures.

Chen HY, Rouillard JM, Gulari E, Lahann J.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11173-8. Epub 2007 Jun 25.

26.

Signal-amplifying conjugated polymer-DNA hybrid chips.

Lee K, Rouillard JM, Pham T, Gulari E, Kim J.

Angew Chem Int Ed Engl. 2007;46(25):4667-70. No abstract available.

27.

Influence of dangling ends and surface-proximal tails of targets on probe-target duplex formation in 16S rRNA gene-based diagnostic arrays.

Stedtfeld RD, Wick LM, Baushke SW, Tourlousse DM, Herzog AB, Xia Y, Rouillard JM, Klappenbach JA, Cole JR, Gulari E, Tiedje JM, Hashsham SA.

Appl Environ Microbiol. 2007 Jan;73(2):380-9. Epub 2006 Nov 17.

28.

An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes.

Le Brigand K, Russell R, Moreilhon C, Rouillard JM, Jost B, Amiot F, Magnone V, Bole-Feysot C, Rostagno P, Virolle V, Defamie V, Dessen P, Williams G, Lyons P, Rios G, Mari B, Gulari E, Kastner P, Gidrol X, Freeman TC, Barbry P.

Nucleic Acids Res. 2006 Jul 19;34(12):e87.

29.

On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes.

Wick LM, Rouillard JM, Whittam TS, Gulari E, Tiedje JM, Hashsham SA.

Nucleic Acids Res. 2006 Feb 13;34(3):e26.

30.

Layer-by-layer assembly of nacre-like nanostructured composites with antimicrobial properties.

Podsiadlo P, Paternel S, Rouillard JM, Zhang Z, Lee J, Lee JW, Gulari E, Kotov NA.

Langmuir. 2005 Dec 6;21(25):11915-21.

PMID:
16316133
31.

Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs.

Hashsham SA, Wick LM, Rouillard JM, Gulari E, Tiedje JM.

Biosens Bioelectron. 2004 Nov 1;20(4):668-83. Review.

PMID:
15522582
32.

Microfluidic PicoArray synthesis of oligodeoxynucleotides and simultaneous assembling of multiple DNA sequences.

Zhou X, Cai S, Hong A, You Q, Yu P, Sheng N, Srivannavit O, Muranjan S, Rouillard JM, Xia Y, Zhang X, Xiang Q, Ganesh R, Zhu Q, Matejko A, Gulari E, Gao X.

Nucleic Acids Res. 2004 Oct 11;32(18):5409-17. Print 2004.

33.

Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM.

Appl Environ Microbiol. 2004 Aug;70(8):4961-70.

34.

Gene2Oligo: oligonucleotide design for in vitro gene synthesis.

Rouillard JM, Lee W, Truan G, Gao X, Zhou X, Gulari E.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W176-80.

35.

Distinct sequences on 11q13.5 and 11q23-24 are frequently coamplified with MLL in complexly organized 11q amplicons in AML/MDS patients.

Zatkova A, Ullmann R, Rouillard JM, Lamb BJ, Kuick R, Hanash SM, Schnittger S, Schoch C, Fonatsch C, Wimmer K.

Genes Chromosomes Cancer. 2004 Apr;39(4):263-76.

PMID:
14978788
36.

Amplification and overexpression of the IGF2 regulator PLAG1 in hepatoblastoma.

Zatkova A, Rouillard JM, Hartmann W, Lamb BJ, Kuick R, Eckart M, von Schweinitz D, Koch A, Fonatsch C, Pietsch T, Hanash SM, Wimmer K.

Genes Chromosomes Cancer. 2004 Feb;39(2):126-37.

PMID:
14695992
37.

Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice.

Creighton C, Kuick R, Misek DE, Rickman DS, Brichory FM, Rouillard JM, Omenn GS, Hanash S.

Genome Biol. 2003;4(7):R46. Epub 2003 Jun 23.

38.

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach.

Rouillard JM, Zuker M, Gulari E.

Nucleic Acids Res. 2003 Jun 15;31(12):3057-62.

39.

Amplification and overexpression of the L-MYC proto-oncogene in ovarian carcinomas.

Wu R, Lin L, Beer DG, Ellenson LH, Lamb BJ, Rouillard JM, Kuick R, Hanash S, Schwartz DR, Fearon ER, Cho KR.

Am J Pathol. 2003 May;162(5):1603-10.

40.

Expression analysis of RNA14, a gene involved in mRNA 3' end maturation in yeast: characterization of the rna14-5 mutant strain.

Brendolise C, Rouillard JM, Dufour ME, Lacroute F.

Mol Genet Genomics. 2002 Jun;267(4):515-25. Epub 2002 May 23.

PMID:
12111559
41.

OligoArray: genome-scale oligonucleotide design for microarrays.

Rouillard JM, Herbert CJ, Zuker M.

Bioinformatics. 2002 Mar;18(3):486-7.

PMID:
11934750
42.

Combined restriction landmark genomic scanning and virtual genome scans identify a novel human homeobox gene, ALX3, that is hypermethylated in neuroblastoma.

Wimmer K, Zhu Xx XX, Rouillard JM, Ambros PF, Lamb BJ, Kuick R, Eckart M, Weinhäusl A, Fonatsch C, Hanash SM.

Genes Chromosomes Cancer. 2002 Mar;33(3):285-94.

PMID:
11807986
43.

Integrating cancer genomics and proteomics in the post-genome era.

Hanash SM, Bobek MP, Rickman DS, Williams T, Rouillard JM, Kuick R, Puravs E.

Proteomics. 2002 Jan;2(1):69-75.

PMID:
11788993
44.

Overexpressed genes/ESTs and characterization of distinct amplicons on 17q23 in breast cancer cells.

Erson AE, Niell BL, DeMers SK, Rouillard JM, Hanash SM, Petty EM.

Neoplasia. 2001 Nov-Dec;3(6):521-6.

45.

DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes.

Ehrlich M, Buchanan KL, Tsien F, Jiang G, Sun B, Uicker W, Weemaes CM, Smeets D, Sperling K, Belohradsky BH, Tommerup N, Misek DE, Rouillard JM, Kuick R, Hanash SM.

Hum Mol Genet. 2001 Dec 1;10(25):2917-31.

PMID:
11741835
46.

A database of protein expression in lung cancer.

Oh JM, Brichory F, Puravs E, Kuick R, Wood C, Rouillard JM, Tra J, Kardia S, Beer D, Hanash S.

Proteomics. 2001 Oct;1(10):1303-19.

PMID:
11721642
47.

Virtual genome scan: a tool for restriction landmark-based scanning of the human genome.

Rouillard JM, Erson AE, Kuick R, Asakawa J, Wimmer K, Muleris M, Petty EM, Hanash S.

Genome Res. 2001 Aug;11(8):1453-9.

48.

Rna14p, a component of the yeast nuclear cleavage/polyadenylation factor I, is also localised in mitochondria.

Rouillard JM, Brendolise C, Lacroute F.

Mol Gen Genet. 2000 Jan;262(6):1103-12.

PMID:
10660071
49.

Neostigmine requirements for reversal of neuromuscular blockade following an infusion of mivacurium.

Lessard MR, Trépanier CA, Rouillard JF.

Can J Anaesth. 1997 Aug;44(8):836-42.

PMID:
9260011
50.

SLS1, a new Saccharomyces cerevisiae gene involved in mitochondrial metabolism, isolated as a syntheticlethal in association with an SSM4 deletion.

Rouillard JM, Dufour ME, Theunissen B, Mandart E, Dujardin G, Lacroute F.

Mol Gen Genet. 1996 Oct 28;252(6):700-8.

PMID:
8917313

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