Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 110


A multivariate Poisson-log normal mixture model for clustering transcriptome sequencing data.

Silva A, Rothstein SJ, McNicholas PD, Subedi S.

BMC Bioinformatics. 2019 Jul 16;20(1):394. doi: 10.1186/s12859-019-2916-0.


Biosynthesis of cannflavins A and B from Cannabis sativa L.

Rea KA, Casaretto JA, Al-Abdul-Wahid MS, Sukumaran A, Geddes-McAlister J, Rothstein SJ, Akhtar TA.

Phytochemistry. 2019 Aug;164:162-171. doi: 10.1016/j.phytochem.2019.05.009. Epub 2019 May 28.


The SNAC-A Transcription Factor ANAC032 Reprograms Metabolism in Arabidopsis.

Sun L, Zhang P, Wang R, Wan J, Ju Q, Rothstein SJ, Xu J.

Plant Cell Physiol. 2019 May 1;60(5):999-1010. doi: 10.1093/pcp/pcz015.


Overexpression of miR169o, an Overlapping MicroRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.

Yu C, Chen Y, Cao Y, Chen H, Wang J, Bi YM, Tian F, Yang F, Rothstein SJ, Zhou X, He C.

Plant Cell Physiol. 2018 Jun 1;59(6):1234-1247. doi: 10.1093/pcp/pcy060.


ROS-Induced anthocyanin production provides feedback protection by scavenging ROS and maintaining photosynthetic capacity in Arabidopsis.

Xu Z, Rothstein SJ.

Plant Signal Behav. 2018 Mar 4;13(3):e1451708. doi: 10.1080/15592324.2018.1451708. Epub 2018 Mar 27.


Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions.

Xu Z, Casaretto JA, Bi YM, Rothstein SJ.

Plant Direct. 2017 Oct 16;1(4):e00016. doi: 10.1002/pld3.16. eCollection 2017 Oct.


Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.

Zhong S, Mahmood K, Bi YM, Rothstein SJ, Ranathunge K.

Front Plant Sci. 2017 Jun 2;8:928. doi: 10.3389/fpls.2017.00928. eCollection 2017.


ROS Induces Anthocyanin Production Via Late Biosynthetic Genes and Anthocyanin Deficiency Confers the Hypersensitivity to ROS-Generating Stresses in Arabidopsis.

Xu Z, Mahmood K, Rothstein SJ.

Plant Cell Physiol. 2017 Aug 1;58(8):1364-1377. doi: 10.1093/pcp/pcx073.


Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.

Lu G, Casaretto JA, Ying S, Mahmood K, Liu F, Bi YM, Rothstein SJ.

Plant Mol Biol. 2017 May;94(1-2):215-227. doi: 10.1007/s11103-017-0604-x. Epub 2017 Mar 24.


The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses.

Mahmood K, Xu Z, El-Kereamy A, Casaretto JA, Rothstein SJ.

Front Plant Sci. 2016 Oct 14;7:1548. eCollection 2016.


NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.

Yan D, Easwaran V, Chau V, Okamoto M, Ierullo M, Kimura M, Endo A, Yano R, Pasha A, Gong Y, Bi YM, Provart N, Guttman D, Krapp A, Rothstein SJ, Nambara E.

Nat Commun. 2016 Oct 12;7:13179. doi: 10.1038/ncomms13179.


ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence in Arabidopsis thaliana.

Mahmood K, El-Kereamy A, Kim SH, Nambara E, Rothstein SJ.

Plant Cell Physiol. 2016 Oct;57(10):2029-2046. Epub 2016 Jul 7.


Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance.

Casaretto JA, El-Kereamy A, Zeng B, Stiegelmeyer SM, Chen X, Bi YM, Rothstein SJ.

BMC Genomics. 2016 Apr 29;17:312. doi: 10.1186/s12864-016-2659-5.


Asparagine Metabolic Pathways in Arabidopsis.

Gaufichon L, Rothstein SJ, Suzuki A.

Plant Cell Physiol. 2016 Apr;57(4):675-89. doi: 10.1093/pcp/pcv184. Epub 2015 Dec 1. Review.


Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.

El-Kereamy A, Bi YM, Mahmood K, Ranathunge K, Yaish MW, Nambara E, Rothstein SJ.

Front Plant Sci. 2015 Nov 3;6:934. doi: 10.3389/fpls.2015.00934. eCollection 2015.


The Genetics of Nitrogen Use Efficiency in Crop Plants.

Han M, Okamoto M, Beatty PH, Rothstein SJ, Good AG.

Annu Rev Genet. 2015;49:269-89. doi: 10.1146/annurev-genet-112414-055037. Epub 2015 Sep 29. Review.


Ammonium-induced architectural and anatomical changes with altered suberin and lignin levels significantly change water and solute permeabilities of rice (Oryza sativa L.) roots.

Ranathunge K, Schreiber L, Bi YM, Rothstein SJ.

Planta. 2016 Jan;243(1):231-49. doi: 10.1007/s00425-015-2406-1. Epub 2015 Sep 18.


Role of microRNAs involved in plant response to nitrogen and phosphorous limiting conditions.

Nguyen GN, Rothstein SJ, Spangenberg G, Kant S.

Front Plant Sci. 2015 Aug 13;6:629. doi: 10.3389/fpls.2015.00629. eCollection 2015. Review.


OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.

Lu G, Coneva V, Casaretto JA, Ying S, Mahmood K, Liu F, Nambara E, Bi YM, Rothstein SJ.

Plant J. 2015 Sep;83(5):913-25. doi: 10.1111/tpj.12939.


Metabolic and co-expression network-based analyses associated with nitrate response in rice.

Coneva V, Simopoulos C, Casaretto JA, El-Kereamy A, Guevara DR, Cohn J, Zhu T, Guo L, Alexander DC, Bi YM, McNicholas PD, Rothstein SJ.

BMC Genomics. 2014 Dec 3;15:1056. doi: 10.1186/1471-2164-15-1056.


ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis.

Yadav V, Molina I, Ranathunge K, Castillo IQ, Rothstein SJ, Reed JW.

Plant Cell. 2014 Sep;26(9):3569-88. doi: 10.1105/tpc.114.129049. Epub 2014 Sep 12.


Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress.

Misyura M, Guevara D, Subedi S, Hudson D, McNicholas PD, Colasanti J, Rothstein SJ.

BMC Genomics. 2014 Aug 13;15:681. doi: 10.1186/1471-2164-15-681.


The challenges of commercializing second-generation transgenic crop traits necessitate the development of international public sector research infrastructure.

Rothstein SJ, Bi YM, Coneva V, Han M, Good A.

J Exp Bot. 2014 Oct;65(19):5673-82. doi: 10.1093/jxb/eru236. Epub 2014 Jun 19. Review.


Agrobacterium-derived cytokinin influences plastid morphology and starch accumulation in Nicotiana benthamiana during transient assays.

Erickson JL, Ziegler J, Guevara D, Abel S, Klösgen RB, Mathur J, Rothstein SJ, Schattat MH.

BMC Plant Biol. 2014 May 9;14:127. doi: 10.1186/1471-2229-14-127.


Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.

Guevara DR, El-Kereamy A, Yaish MW, Mei-Bi Y, Rothstein SJ.

PLoS One. 2014 May 1;9(5):e96158. doi: 10.1371/journal.pone.0096158. eCollection 2014.


High throughput RNA sequencing of a hybrid maize and its parents shows different mechanisms responsive to nitrogen limitation.

Bi YM, Meyer A, Downs GS, Shi X, El-Kereamy A, Lukens L, Rothstein SJ.

BMC Genomics. 2014 Jan 28;15:77. doi: 10.1186/1471-2164-15-77.


AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions.

Ranathunge K, El-Kereamy A, Gidda S, Bi YM, Rothstein SJ.

J Exp Bot. 2014 Mar;65(4):965-79. doi: 10.1093/jxb/ert458. Epub 2014 Jan 13.


Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.

Liseron-Monfils C, Bi YM, Downs GS, Wu W, Signorelli T, Lu G, Chen X, Bondo E, Zhu T, Lukens LN, Colasanti J, Rothstein SJ, Raizada MN.

Plant Signal Behav. 2013 Oct;8(10). pii: e26056. doi: 10.4161/psb.26056.


Global DNA methylation analysis using methyl-sensitive amplification polymorphism (MSAP).

Yaish MW, Peng M, Rothstein SJ.

Methods Mol Biol. 2014;1062:285-98. doi: 10.1007/978-1-62703-580-4_16.


Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture.

Hudson D, Guevara DR, Hand AJ, Xu Z, Hao L, Chen X, Zhu T, Bi YM, Rothstein SJ.

Plant Physiol. 2013 May;162(1):132-44. doi: 10.1104/pp.113.217265. Epub 2013 Apr 2.


A developmental transcriptional network for maize defines coexpression modules.

Downs GS, Bi YM, Colasanti J, Wu W, Chen X, Zhu T, Rothstein SJ, Lukens LN.

Plant Physiol. 2013 Apr;161(4):1830-43. doi: 10.1104/pp.112.213231. Epub 2013 Feb 6.


Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses.

Humbert S, Subedi S, Cohn J, Zeng B, Bi YM, Chen X, Zhu T, McNicholas PD, Rothstein SJ.

BMC Genomics. 2013 Jan 16;14:3. doi: 10.1186/1471-2164-14-3.


The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism.

El-Kereamy A, Bi YM, Ranathunge K, Beatty PH, Good AG, Rothstein SJ.

PLoS One. 2012;7(12):e52030. doi: 10.1371/journal.pone.0052030. Epub 2012 Dec 14.


MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis.

Tang X, Bian S, Tang M, Lu Q, Li S, Liu X, Tian G, Nguyen V, Tsang EW, Wang A, Rothstein SJ, Chen X, Cui Y.

PLoS Genet. 2012;8(11):e1003091. doi: 10.1371/journal.pgen.1003091. Epub 2012 Nov 29.


Physiological and genetic analysis of Arabidopsis thaliana anthocyanin biosynthesis mutants under chronic adverse environmental conditions.

Misyura M, Colasanti J, Rothstein SJ.

J Exp Bot. 2013 Jan;64(1):229-40. doi: 10.1093/jxb/ers328. Epub 2012 Nov 16.


Evidence that the Arabidopsis Ubiquitin C-terminal Hydrolases 1 and 2 associate with the 26S proteasome and the TREX-2 complex.

Tian G, Lu Q, Kohalmi SE, Rothstein SJ, Cui Y.

Plant Signal Behav. 2012 Nov;7(11):1415-9. doi: 10.4161/psb.21899. Epub 2012 Sep 5.


Improving yield potential in crops under elevated CO(2): Integrating the photosynthetic and nitrogen utilization efficiencies.

Kant S, Seneweera S, Rodin J, Materne M, Burch D, Rothstein SJ, Spangenberg G.

Front Plant Sci. 2012 Jul 19;3:162. doi: 10.3389/fpls.2012.00162. eCollection 2012.


Transcript and metabolite signature of maize source leaves suggests a link between transitory starch to sucrose balance and the autonomous floral transition.

Coneva V, Guevara D, Rothstein SJ, Colasanti J.

J Exp Bot. 2012 Sep;63(14):5079-92. doi: 10.1093/jxb/ers158. Epub 2012 Jul 12.


Alteration of the bZIP60/IRE1 pathway affects plant response to ER stress in Arabidopsis thaliana.

Humbert S, Zhong S, Deng Y, Howell SH, Rothstein SJ.

PLoS One. 2012;7(6):e39023. doi: 10.1371/journal.pone.0039023. Epub 2012 Jun 12.


Synergistic repression of the embryonic programme by SET DOMAIN GROUP 8 and EMBRYONIC FLOWER 2 in Arabidopsis seedlings.

Tang X, Lim MH, Pelletier J, Tang M, Nguyen V, Keller WA, Tsang EW, Wang A, Rothstein SJ, Harada JJ, Cui Y.

J Exp Bot. 2012 Feb;63(3):1391-404. doi: 10.1093/jxb/err383. Epub 2011 Dec 7.


Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots.

Xu Z, Zhong S, Li X, Li W, Rothstein SJ, Zhang S, Bi Y, Xie C.

PLoS One. 2011;6(11):e28009. doi: 10.1371/journal.pone.0028009. Epub 2011 Nov 23.


GNC and CGA1 modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression in Arabidopsis.

Hudson D, Guevara D, Yaish MW, Hannam C, Long N, Clarke JD, Bi YM, Rothstein SJ.

PLoS One. 2011;6(11):e26765. doi: 10.1371/journal.pone.0026765. Epub 2011 Nov 10.


The role of epigenetic processes in controlling flowering time in plants exposed to stress.

Yaish MW, Colasanti J, Rothstein SJ.

J Exp Bot. 2011 Jul;62(11):3727-35. doi: 10.1093/jxb/err177. Epub 2011 Jun 1. Review.


Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis.

Deng Y, Humbert S, Liu JX, Srivastava R, Rothstein SJ, Howell SH.

Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7247-52. doi: 10.1073/pnas.1102117108. Epub 2011 Apr 11.


Genetic regulation by NLA and microRNA827 for maintaining nitrate-dependent phosphate homeostasis in arabidopsis.

Kant S, Peng M, Rothstein SJ.

PLoS Genet. 2011 Mar;7(3):e1002021. doi: 10.1371/journal.pgen.1002021. Epub 2011 Mar 24.


Reappraisal of nitrogen use efficiency in rice overexpressing glutamine synthetase1.

Brauer EK, Rochon A, Bi YM, Bozzo GG, Rothstein SJ, Shelp BJ.

Physiol Plant. 2011 Apr;141(4):361-72. doi: 10.1111/j.1399-3054.2011.01443.x. Epub 2011 Feb 6.


Hydrophobic-domain-dependent protein-protein interactions mediate the localization of GPAT enzymes to ER subdomains.

Gidda SK, Shockey JM, Falcone M, Kim PK, Rothstein SJ, Andrews DW, Dyer JM, Mullen RT.

Traffic. 2011 Apr;12(4):452-72. doi: 10.1111/j.1600-0854.2011.01160.x. Epub 2011 Feb 8.


Exploring the molecular and metabolic factors contributing to the adaptation of maize seedlings to nitrate limitation.

El-Kereamy A, Guevara D, Bi YM, Chen X, Rothstein SJ.

Front Plant Sci. 2011 Sep 13;2:49. doi: 10.3389/fpls.2011.00049. eCollection 2011.


Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency.

Kant S, Bi YM, Rothstein SJ.

J Exp Bot. 2011 Feb;62(4):1499-509. doi: 10.1093/jxb/erq297. Epub 2010 Oct 6. Review.


The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.

Yaish MW, El-Kereamy A, Zhu T, Beatty PH, Good AG, Bi YM, Rothstein SJ.

PLoS Genet. 2010 Sep 9;6(9):e1001098. doi: 10.1371/journal.pgen.1001098.

Supplemental Content

Loading ...
Support Center