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Items: 1 to 50 of 229


A multivariate Poisson-log normal mixture model for clustering transcriptome sequencing data.

Silva A, Rothstein SJ, McNicholas PD, Subedi S.

BMC Bioinformatics. 2019 Jul 16;20(1):394. doi: 10.1186/s12859-019-2916-0.


Biosynthesis of cannflavins A and B from Cannabis sativa L.

Rea KA, Casaretto JA, Al-Abdul-Wahid MS, Sukumaran A, Geddes-McAlister J, Rothstein SJ, Akhtar TA.

Phytochemistry. 2019 Aug;164:162-171. doi: 10.1016/j.phytochem.2019.05.009. Epub 2019 May 28.


Do dietary soy alternatives lead to pork quality improvements or drawbacks? A look into micro-alga and insect protein in swine diets.

Altmann BA, Neumann C, Rothstein S, Liebert F, Mörlein D.

Meat Sci. 2019 Jul;153:26-34. doi: 10.1016/j.meatsci.2019.03.001. Epub 2019 Mar 5.


The SNAC-A Transcription Factor ANAC032 Reprograms Metabolism in Arabidopsis.

Sun L, Zhang P, Wang R, Wan J, Ju Q, Rothstein SJ, Xu J.

Plant Cell Physiol. 2019 May 1;60(5):999-1010. doi: 10.1093/pcp/pcz015.


Rapid prototyping of proteins: Mail order gene fragments to assayable proteins within 24 hours.

Dopp JL, Rothstein SM, Mansell TJ, Reuel NF.

Biotechnol Bioeng. 2019 Mar;116(3):667-676. doi: 10.1002/bit.26912. Epub 2019 Jan 16.


Overexpression of miR169o, an Overlapping MicroRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.

Yu C, Chen Y, Cao Y, Chen H, Wang J, Bi YM, Tian F, Yang F, Rothstein SJ, Zhou X, He C.

Plant Cell Physiol. 2018 Jun 1;59(6):1234-1247. doi: 10.1093/pcp/pcy060.


ROS-Induced anthocyanin production provides feedback protection by scavenging ROS and maintaining photosynthetic capacity in Arabidopsis.

Xu Z, Rothstein SJ.

Plant Signal Behav. 2018 Mar 4;13(3):e1451708. doi: 10.1080/15592324.2018.1451708. Epub 2018 Mar 27.


Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions.

Xu Z, Casaretto JA, Bi YM, Rothstein SJ.

Plant Direct. 2017 Oct 16;1(4):e00016. doi: 10.1002/pld3.16. eCollection 2017 Oct.


Primum Non Nocere and the 5 Rights.

Popp G, Clarke D, Rothstein S.

Adv Skin Wound Care. 2017 Oct;30(10):473-478. doi: 10.1097/01.ASW.0000524607.90328.1b. Review.


Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.

Zhong S, Mahmood K, Bi YM, Rothstein SJ, Ranathunge K.

Front Plant Sci. 2017 Jun 2;8:928. doi: 10.3389/fpls.2017.00928. eCollection 2017.


ROS Induces Anthocyanin Production Via Late Biosynthetic Genes and Anthocyanin Deficiency Confers the Hypersensitivity to ROS-Generating Stresses in Arabidopsis.

Xu Z, Mahmood K, Rothstein SJ.

Plant Cell Physiol. 2017 Aug 1;58(8):1364-1377. doi: 10.1093/pcp/pcx073.


Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.

Lu G, Casaretto JA, Ying S, Mahmood K, Liu F, Bi YM, Rothstein SJ.

Plant Mol Biol. 2017 May;94(1-2):215-227. doi: 10.1007/s11103-017-0604-x. Epub 2017 Mar 24.


Radiotherapy and MVA-MUC1-IL-2 vaccine act synergistically for inducing specific immunity to MUC-1 tumor antigen.

Hillman GG, Reich LA, Rothstein SE, Abernathy LM, Fountain MD, Hankerd K, Yunker CK, Rakowski JT, Quemeneur E, Slos P.

J Immunother Cancer. 2017 Jan 17;5:4. doi: 10.1186/s40425-016-0204-3. eCollection 2017.


The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses.

Mahmood K, Xu Z, El-Kereamy A, Casaretto JA, Rothstein SJ.

Front Plant Sci. 2016 Oct 14;7:1548. eCollection 2016.


NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.

Yan D, Easwaran V, Chau V, Okamoto M, Ierullo M, Kimura M, Endo A, Yano R, Pasha A, Gong Y, Bi YM, Provart N, Guttman D, Krapp A, Rothstein SJ, Nambara E.

Nat Commun. 2016 Oct 12;7:13179. doi: 10.1038/ncomms13179.


Note: A pure-sampling quantum Monte Carlo algorithm with independent Metropolis.

Vrbik J, Ospadov E, Rothstein SM.

J Chem Phys. 2016 Jul 14;145(2):026101. doi: 10.1063/1.4958340.


ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence in Arabidopsis thaliana.

Mahmood K, El-Kereamy A, Kim SH, Nambara E, Rothstein SJ.

Plant Cell Physiol. 2016 Oct;57(10):2029-2046. Epub 2016 Jul 7.


Expression of OsMYB55 in maize activates stress-responsive genes and enhances heat and drought tolerance.

Casaretto JA, El-Kereamy A, Zeng B, Stiegelmeyer SM, Chen X, Bi YM, Rothstein SJ.

BMC Genomics. 2016 Apr 29;17:312. doi: 10.1186/s12864-016-2659-5.


Soy Isoflavones Promote Radioprotection of Normal Lung Tissue by Inhibition of Radiation-Induced Activation of Macrophages and Neutrophils.

Abernathy LM, Fountain MD, Rothstein SE, David JM, Yunker CK, Rakowski J, Lonardo F, Joiner MC, Hillman GG.

J Thorac Oncol. 2015 Dec;10(12):1703-12. doi: 10.1097/JTO.0000000000000677.


Asparagine Metabolic Pathways in Arabidopsis.

Gaufichon L, Rothstein SJ, Suzuki A.

Plant Cell Physiol. 2016 Apr;57(4):675-89. doi: 10.1093/pcp/pcv184. Epub 2015 Dec 1. Review.


Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.

El-Kereamy A, Bi YM, Mahmood K, Ranathunge K, Yaish MW, Nambara E, Rothstein SJ.

Front Plant Sci. 2015 Nov 3;6:934. doi: 10.3389/fpls.2015.00934. eCollection 2015.


Radiation-Induced Esophagitis is Mitigated by Soy Isoflavones.

Fountain MD, Abernathy LM, Lonardo F, Rothstein SE, Dominello MM, Yunker CK, Chen W, Gadgeel S, Joiner MC, Hillman GG.

Front Oncol. 2015 Oct 21;5:238. doi: 10.3389/fonc.2015.00238. eCollection 2015.


The Genetics of Nitrogen Use Efficiency in Crop Plants.

Han M, Okamoto M, Beatty PH, Rothstein SJ, Good AG.

Annu Rev Genet. 2015;49:269-89. doi: 10.1146/annurev-genet-112414-055037. Epub 2015 Sep 29. Review.


Ammonium-induced architectural and anatomical changes with altered suberin and lignin levels significantly change water and solute permeabilities of rice (Oryza sativa L.) roots.

Ranathunge K, Schreiber L, Bi YM, Rothstein SJ.

Planta. 2016 Jan;243(1):231-49. doi: 10.1007/s00425-015-2406-1. Epub 2015 Sep 18.


Role of microRNAs involved in plant response to nitrogen and phosphorous limiting conditions.

Nguyen GN, Rothstein SJ, Spangenberg G, Kant S.

Front Plant Sci. 2015 Aug 13;6:629. doi: 10.3389/fpls.2015.00629. eCollection 2015. Review.


OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.

Lu G, Coneva V, Casaretto JA, Ying S, Mahmood K, Liu F, Nambara E, Bi YM, Rothstein SJ.

Plant J. 2015 Sep;83(5):913-25. doi: 10.1111/tpj.12939.


Positive Charge of "Sticky" Peptides and Proteins Impedes Release From Negatively Charged PLGA Matrices.

Balmert SC, Zmolek AC, Glowacki AJ, Knab TD, Rothstein SN, Wokpetah JM, Fedorchak MV, Little SR.

J Mater Chem B. 2015 Jun 21;3(23):4723-4734.


A pure-sampling quantum Monte Carlo algorithm.

Ospadov E, Rothstein SM.

J Chem Phys. 2015 Jan 14;142(2):024114. doi: 10.1063/1.4905664.


Epaulet size and current condition in red-winged blackbirds: examining a semistatic signal, testosterone, immune function, and parasites.

Merrill L, Stewart TE, González-Gómez PL, O'Loghlen AL, Wingfield JC, Ellis VA, Rothstein SI.

Physiol Biochem Zool. 2015 Jan-Feb;88(1):11-21. doi: 10.1086/679475. Epub 2014 Dec 10.


Metabolic and co-expression network-based analyses associated with nitrate response in rice.

Coneva V, Simopoulos C, Casaretto JA, El-Kereamy A, Guevara DR, Cohn J, Zhu T, Guo L, Alexander DC, Bi YM, McNicholas PD, Rothstein SJ.

BMC Genomics. 2014 Dec 3;15:1056. doi: 10.1186/1471-2164-15-1056.


ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis.

Yadav V, Molina I, Ranathunge K, Castillo IQ, Rothstein SJ, Reed JW.

Plant Cell. 2014 Sep;26(9):3569-88. doi: 10.1105/tpc.114.129049. Epub 2014 Sep 12.


Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress.

Misyura M, Guevara D, Subedi S, Hudson D, McNicholas PD, Colasanti J, Rothstein SJ.

BMC Genomics. 2014 Aug 13;15:681. doi: 10.1186/1471-2164-15-681.


The challenges of commercializing second-generation transgenic crop traits necessitate the development of international public sector research infrastructure.

Rothstein SJ, Bi YM, Coneva V, Han M, Good A.

J Exp Bot. 2014 Oct;65(19):5673-82. doi: 10.1093/jxb/eru236. Epub 2014 Jun 19. Review.


Exploring story grammar structure in the book reading interactions of African American mothers and their preschool children: a pilot investigation.

Harris YR, Rothstein SE.

Front Psychol. 2014 Jun 4;5:545. doi: 10.3389/fpsyg.2014.00545. eCollection 2014.


Agrobacterium-derived cytokinin influences plastid morphology and starch accumulation in Nicotiana benthamiana during transient assays.

Erickson JL, Ziegler J, Guevara D, Abel S, Klösgen RB, Mathur J, Rothstein SJ, Schattat MH.

BMC Plant Biol. 2014 May 9;14:127. doi: 10.1186/1471-2229-14-127.


Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.

Guevara DR, El-Kereamy A, Yaish MW, Mei-Bi Y, Rothstein SJ.

PLoS One. 2014 May 1;9(5):e96158. doi: 10.1371/journal.pone.0096158. eCollection 2014.


High throughput RNA sequencing of a hybrid maize and its parents shows different mechanisms responsive to nitrogen limitation.

Bi YM, Meyer A, Downs GS, Shi X, El-Kereamy A, Lukens L, Rothstein SJ.

BMC Genomics. 2014 Jan 28;15:77. doi: 10.1186/1471-2164-15-77.


AMT1;1 transgenic rice plants with enhanced NH4(+) permeability show superior growth and higher yield under optimal and suboptimal NH4(+) conditions.

Ranathunge K, El-Kereamy A, Gidda S, Bi YM, Rothstein SJ.

J Exp Bot. 2014 Mar;65(4):965-79. doi: 10.1093/jxb/ert458. Epub 2014 Jan 13.


In vitro characterization of a sustained-release formulation for enfuvirtide.

Rothstein SN, Huber KD, Sluis-Cremer N, Little SR.

Antimicrob Agents Chemother. 2014;58(3):1797-9. doi: 10.1128/AAC.02440-13. Epub 2013 Dec 23.


Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.

Liseron-Monfils C, Bi YM, Downs GS, Wu W, Signorelli T, Lu G, Chen X, Bondo E, Zhu T, Lukens LN, Colasanti J, Rothstein SJ, Raizada MN.

Plant Signal Behav. 2013 Oct;8(10). pii: e26056. doi: 10.4161/psb.26056.


Radioprotection of lung tissue by soy isoflavones.

Hillman GG, Singh-Gupta V, Lonardo F, Hoogstra DJ, Abernathy LM, Yunker CK, Rothstein SE, Rakowski J, Sarkar FH, Gadgeel S, Konski AA, Joiner MC.

J Thorac Oncol. 2013 Nov;8(11):1356-64. doi: 10.1097/JTO.0b013e3182a4713e.


Global DNA methylation analysis using methyl-sensitive amplification polymorphism (MSAP).

Yaish MW, Peng M, Rothstein SJ.

Methods Mol Biol. 2014;1062:285-98. doi: 10.1007/978-1-62703-580-4_16.


"Zero-dimensional" single-walled carbon nanotubes.

Kamalasanan K, Gottardi R, Tan S, Chen Y, Godugu B, Rothstein S, Balazs AC, Star A, Little SR.

Angew Chem Int Ed Engl. 2013 Oct 18;52(43):11308-12. doi: 10.1002/anie.201305526. Epub 2013 Sep 5.


Differential effect of soy isoflavones in enhancing high intensity radiotherapy and protecting lung tissue in a pre-clinical model of lung carcinoma.

Hillman GG, Singh-Gupta V, Hoogstra DJ, Abernathy L, Rakowski J, Yunker CK, Rothstein SE, Sarkar FH, Gadgeel S, Konski AA, Lonardo F, Joiner MC.

Radiother Oncol. 2013 Oct;109(1):117-25. doi: 10.1016/j.radonc.2013.08.015. Epub 2013 Sep 7.


Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture.

Hudson D, Guevara DR, Hand AJ, Xu Z, Hao L, Chen X, Zhu T, Bi YM, Rothstein SJ.

Plant Physiol. 2013 May;162(1):132-44. doi: 10.1104/pp.113.217265. Epub 2013 Apr 2.


A developmental transcriptional network for maize defines coexpression modules.

Downs GS, Bi YM, Colasanti J, Wu W, Chen X, Zhu T, Rothstein SJ, Lukens LN.

Plant Physiol. 2013 Apr;161(4):1830-43. doi: 10.1104/pp.112.213231. Epub 2013 Feb 6.


Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses.

Humbert S, Subedi S, Cohn J, Zeng B, Bi YM, Chen X, Zhu T, McNicholas PD, Rothstein SJ.

BMC Genomics. 2013 Jan 16;14:3. doi: 10.1186/1471-2164-14-3.


Immune function in an avian brood parasite and its nonparasitic relative.

Merrill L, O'Loghlen AL, Wingfield JC, Rothstein SI.

Physiol Biochem Zool. 2013 Jan-Feb;86(1):61-72. doi: 10.1086/668852. Epub 2012 Dec 14.


The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism.

El-Kereamy A, Bi YM, Ranathunge K, Beatty PH, Good AG, Rothstein SJ.

PLoS One. 2012;7(12):e52030. doi: 10.1371/journal.pone.0052030. Epub 2012 Dec 14.


MicroRNA-mediated repression of the seed maturation program during vegetative development in Arabidopsis.

Tang X, Bian S, Tang M, Lu Q, Li S, Liu X, Tian G, Nguyen V, Tsang EW, Wang A, Rothstein SJ, Chen X, Cui Y.

PLoS Genet. 2012;8(11):e1003091. doi: 10.1371/journal.pgen.1003091. Epub 2012 Nov 29.

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