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Items: 1 to 50 of 66

1.

Structural and biochemical investigation of bacteriophage N4-encoded RNA polymerases.

Lenneman BR, Rothman-Denes LB.

Biomolecules. 2015 Apr 27;5(2):647-67. doi: 10.3390/biom5020647. Review.

2.

Structure of Escherichia coli RNA polymerase holoenzyme at last.

Rothman-Denes LB.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19662-3. doi: 10.1073/pnas.1320604110. Epub 2013 Nov 22. No abstract available.

3.

X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides.

Gleghorn ML, Davydova EK, Basu R, Rothman-Denes LB, Murakami KS.

Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3566-71. doi: 10.1073/pnas.1016691108. Epub 2011 Feb 14.

4.

A phage-encoded inhibitor of Escherichia coli DNA replication targets the DNA polymerase clamp loader.

Yano ST, Rothman-Denes LB.

Mol Microbiol. 2011 Mar;79(5):1325-38. doi: 10.1111/j.1365-2958.2010.07526.x. Epub 2011 Jan 18.

5.

Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase.

Gleghorn ML, Davydova EK, Rothman-Denes LB, Murakami KS.

Mol Cell. 2008 Dec 5;32(5):707-17. doi: 10.1016/j.molcel.2008.11.010.

6.

Identification of bacteriophage N4 virion RNA polymerase-nucleic acid interactions in transcription complexes.

Davydova EK, Kaganman I, Kazmierczak KM, Rothman-Denes LB.

J Biol Chem. 2009 Jan 23;284(4):1962-70. doi: 10.1074/jbc.M807785200. Epub 2008 Nov 17.

7.

The tail sheath of bacteriophage N4 interacts with the Escherichia coli receptor.

McPartland J, Rothman-Denes LB.

J Bacteriol. 2009 Jan;191(2):525-32. doi: 10.1128/JB.01423-08. Epub 2008 Nov 14.

8.

Insight into DNA and protein transport in double-stranded DNA viruses: the structure of bacteriophage N4.

Choi KH, McPartland J, Kaganman I, Bowman VD, Rothman-Denes LB, Rossmann MG.

J Mol Biol. 2008 May 2;378(3):726-36. doi: 10.1016/j.jmb.2008.02.059. Epub 2008 Mar 4.

9.

X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase.

Murakami KS, Davydova EK, Rothman-Denes LB.

Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5046-51. doi: 10.1073/pnas.0712325105. Epub 2008 Mar 24.

10.

Cell regulation.

Rothman-Denes LB, Parsot C.

Curr Opin Microbiol. 2008 Apr;11(2):75-7. doi: 10.1016/j.mib.2008.02.017. Epub 2008 Mar 21. No abstract available.

PMID:
18358764
11.

Bacteriophage N4 virion RNA polymerase interaction with its promoter DNA hairpin.

Davydova EK, Santangelo TJ, Rothman-Denes LB.

Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7033-8. Epub 2007 Apr 16.

12.

Coliphage N4 N-acetylmuramidase defines a new family of murein hydrolases.

Stojković EA, Rothman-Denes LB.

J Mol Biol. 2007 Feb 16;366(2):406-19. Epub 2006 Nov 11.

PMID:
17174325
13.

An open letter to Elias Zerhouni.

Altman S, Bassler BL, Beckwith J, Belfort M, Berg HC, Bloom B, Brenchley JE, Campbell A, Collier RJ, Connell N, Cozzarelli NR, Craig NL, Darst S, Ebright RH, Elledge SJ, Falkow S, Galan JE, Gottesman M, Gourse R, Grindley ND, Gross CA, Grossman A, Hochschild A, Howe M, Hurwitz J, Isberg RR, Kaplan S, Kornberg A, Kustu SG, Landick RC, Landy A, Levy SB, Losick R, Long SR, Maloy SR, Mekalanos JJ, Neidhardt FC, Pace NR, Ptashne M, Roberts JW, Roth JR, Rothman-Denes LB, Salyers A, Schaechter M, Shapiro L, Silhavy TJ, Simon MI, Walker G, Yanofsky C, Zinder N.

Science. 2005 Mar 4;307(5714):1409-10. No abstract available.

PMID:
15746409
14.

Bacteriophage N4-coded, virion-encapsulated DNA-dependent RNA polymerase.

Davydova EK, Kazmierczak KM, Rothman-Denes LB.

Methods Enzymol. 2003;370:83-94. No abstract available.

PMID:
14712636
15.

Phage N4 RNA polymerase II recruitment to DNA by a single-stranded DNA-binding protein.

Carter RH, Demidenko AA, Hattingh-Willis S, Rothman-Denes LB.

Genes Dev. 2003 Sep 15;17(18):2334-45.

16.
17.

The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases.

Kazmierczak KM, Davydova EK, Mustaev AA, Rothman-Denes LB.

EMBO J. 2002 Nov 1;21(21):5815-23.

18.

N4 RNA polymerase II, a heterodimeric RNA polymerase with homology to the single-subunit family of RNA polymerases.

Willis SH, Kazmierczak KM, Carter RH, Rothman-Denes LB.

J Bacteriol. 2002 Sep;184(18):4952-61.

19.

A genomic approach to gene fusion technology.

Van Dyk TK, Wei Y, Hanafey MK, Dolan M, Reeve MJ, Rafalski JA, Rothman-Denes LB, LaRossa RA.

Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2555-60. Epub 2001 Feb 13.

20.

Transcriptional regulation by DNA structural transitions and single-stranded DNA-binding proteins.

Rothman-Denes LB, Dai X, Davydova E, Carter R, Kazmierczak K.

Cold Spring Harb Symp Quant Biol. 1998;63:63-73. Review. No abstract available.

PMID:
10384271
21.

DNA structure and transcription.

Dai X, Rothman-Denes LB.

Curr Opin Microbiol. 1999 Apr;2(2):126-30. Review.

PMID:
10322174
22.

Sequence-dependent extrusion of a small DNA hairpin at the N4 virion RNA polymerase promoters.

Dai X, Kloster M, Rothman-Denes LB.

J Mol Biol. 1998;283(1):43-58.

PMID:
9761672
23.
24.

Supercoil-induced extrusion of a regulatory DNA hairpin.

Dai X, Greizerstein MB, Nadas-Chinni K, Rothman-Denes LB.

Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2174-9.

25.

RNA polymerase beta' subunit: a target of DNA binding-independent activation.

Miller A, Wood D, Ebright RH, Rothman-Denes LB.

Science. 1997 Mar 14;275(5306):1655-7.

26.

E. coli SSB activates N4 virion RNA polymerase promoters by stabilizing a DNA hairpin required for promoter recognition.

Glucksmann-Kuis MA, Dai X, Markiewicz P, Rothman-Denes LB.

Cell. 1996 Jan 12;84(1):147-54.

27.

Single-stranded DNA-binding proteins as transcriptional activators.

Miller A, Dai X, Choi M, Glucksmann-Kuis MA, Rothman-Denes LB.

Methods Enzymol. 1996;274:9-20. No abstract available.

PMID:
8902792
30.

Two overlapping genes encoding membrane proteins required for bacteriophage N4 adsorption.

Kiino DR, Singer MS, Rothman-Denes LB.

J Bacteriol. 1993 Nov;175(21):7081-5.

31.

A cytoplasmic protein, NfrC, is required for bacteriophage N4 adsorption.

Kiino DR, Licudine R, Wilt K, Yang DH, Rothman-Denes LB.

J Bacteriol. 1993 Nov;175(21):7074-80.

32.
33.

Specific sequences and a hairpin structure in the template strand are required for N4 virion RNA polymerase promoter recognition.

Glucksmann MA, Markiewicz P, Malone C, Rothman-Denes LB.

Cell. 1992 Aug 7;70(3):491-500.

PMID:
1643660
34.

N4 RNA polymerase II sites of transcription initiation.

Abravaya K, Rothman-Denes LB.

J Mol Biol. 1990 Jan 20;211(2):359-72.

PMID:
2407852
35.

Genetic analysis of bacteriophage N4 adsorption.

Kiino DR, Rothman-Denes LB.

J Bacteriol. 1989 Sep;171(9):4595-602.

36.

Purification and characterization of the coliphage N4-coded single-stranded DNA binding protein.

Lindberg G, Kowalczykowski SC, Rist JK, Sugino A, Rothman-Denes LB.

J Biol Chem. 1989 Jul 25;264(21):12700-8.

37.

In vitro requirements for N4 RNA polymerase II-specific initiation.

Abravaya K, Rothman-Denes LB.

J Biol Chem. 1989 Jul 25;264(21):12695-9.

38.

Twelfth Fritz Lipmann lecture. Initiation of transcription--a general tool for affinity labeling of RNA polymerases by autocatalysis.

Hartmann GR, Biebricher C, Glaser SJ, Grosse F, Katzameyer MJ, Lindner AJ, Mosig H, Nasheuer HP, Rothman-Denes LB, Schäffner AR, et al.

Biol Chem Hoppe Seyler. 1988 Sep;369(9):775-88. Review. No abstract available.

PMID:
3067733
39.

Purification and characterization of bacteriophage N4-induced DNA polymerase.

Lindberg GK, Rist JK, Kunkel TA, Sugino A, Rothman-Denes LB.

J Biol Chem. 1988 Aug 15;263(23):11319-26.

40.

Structure of the ends of the coliphage N4 genome.

Ohmori H, Haynes LL, Rothman-Denes LB.

J Mol Biol. 1988 Jul 5;202(1):1-10.

PMID:
3172206
41.

N4 virion DNA dependent-RNA polymerase: initiation sequences utilized by the enzyme on heterologous templates.

Markiewicz P, Glucksmann A, Rothman-Denes LB.

Nucleic Acids Res. 1988 Feb 11;16(3):1011-26.

42.

Cloning and generation of a genetic map of bacteriophage N4 DNA.

Malone C, Spellman S, Hyman D, Rothman-Denes LB.

Virology. 1988 Feb;162(2):328-36.

PMID:
3341115
43.

Cell type-specific negative regulatory element in the control region of the rat alpha-fetoprotein gene.

Muglia L, Rothman-Denes LB.

Proc Natl Acad Sci U S A. 1986 Oct;83(20):7653-7.

44.

Bacteriophage N4-coded 5'----3' exonuclease. Purification and characterization.

Guinta D, Lindberg G, Rothman-Denes LB.

J Biol Chem. 1986 Aug 15;261(23):10736-43.

45.

Development of an in vitro bacteriophage N4 DNA replication system.

Rist JK, Pearle M, Sugino A, Rothman-Denes LB.

J Biol Chem. 1986 Aug 15;261(23):10506-10.

46.

Host and phage-coded functions required for coliphage N4 DNA replication.

Guinta D, Stambouly J, Falco SC, Rist JK, Rothman-Denes LB.

Virology. 1986 Apr 15;150(1):33-44.

PMID:
3006344
47.

N4 virion RNA polymerase sites of transcription initiation.

Haynes LL, Rothman-Denes LB.

Cell. 1985 Jun;41(2):597-605.

PMID:
3986911
48.
49.

Bacteriophage N4-induced transcribing activities in E. coli. III. A third cistron required for N4 RNA polymerase II activity.

Zehring WA, Falco SC, Malone C, Rothman-Denes LB.

Virology. 1983 Apr 30;126(2):678-87.

PMID:
6344415
50.

Transcriptional map of bacteriophage N4. Location and polarity of N4 RNAs.

Zivin R, Zehring W, Rothman-Denes LB.

J Mol Biol. 1981 Oct 25;152(2):335-56. No abstract available.

PMID:
6276570

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