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Items: 38

1.

Single Domain 10 nm Ferromagnetism Imprinted on Superparamagnetic Nanoparticles Using Chiral Molecules.

Koplovitz G, Leitus G, Ghosh S, Bloom BP, Yochelis S, Rotem D, Vischio F, Striccoli M, Fanizza E, Naaman R, Waldeck DH, Porath D, Paltiel Y.

Small. 2019 Jan;15(1):e1804557. doi: 10.1002/smll.201804557. Epub 2018 Nov 21.

PMID:
30462882
2.

Crystallographic orientation errors in mechanical exfoliation.

Kolumbus Y, Zalic A, Fardian-Melamed N, Barkay Z, Rotem D, Porath D, Steinberg H.

J Phys Condens Matter. 2018 Nov 28;30(47):475704. doi: 10.1088/1361-648X/aae877. Epub 2018 Nov 6.

PMID:
30398169
3.

Tumor fraction in cell-free DNA as a biomarker in prostate cancer.

Choudhury AD, Werner L, Francini E, Wei XX, Ha G, Freeman SS, Rhoades J, Reed SC, Gydush G, Rotem D, Lo C, Taplin ME, Harshman LC, Zhang Z, O'Connor EP, Stover DG, Parsons HA, Getz G, Meyerson M, Love JC, Hahn WC, Adalsteinsson VA.

JCI Insight. 2018 Nov 2;3(21). pii: 122109. doi: 10.1172/jci.insight.122109.

4.

Advances in Synthesis and Measurement of Charge Transport in DNA-Based Derivatives.

Zhuravel R, Stern A, Fardian-Melamed N, Eidelshtein G, Katrivas L, Rotem D, Kotlyar AB, Porath D.

Adv Mater. 2018 Oct;30(41):e1706984. doi: 10.1002/adma.201706984. Epub 2018 Jul 8. Review.

PMID:
29984432
5.

Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing.

Viswanathan SR, Ha G, Hoff AM, Wala JA, Carrot-Zhang J, Whelan CW, Haradhvala NJ, Freeman SS, Reed SC, Rhoades J, Polak P, Cipicchio M, Wankowicz SA, Wong A, Kamath T, Zhang Z, Gydush GJ, Rotem D; PCF/SU2C International Prostate Cancer Dream Team, Love JC, Getz G, Gabriel S, Zhang CZ, Dehm SM, Nelson PS, Van Allen EM, Choudhury AD, Adalsteinsson VA, Beroukhim R, Taplin ME, Meyerson M.

Cell. 2018 Jul 12;174(2):433-447.e19. doi: 10.1016/j.cell.2018.05.036. Epub 2018 Jun 18.

PMID:
29909985
6.

Highly Conductive Thin Uniform Gold-Coated DNA Nanowires.

Stern A, Eidelshtein G, Zhuravel R, Livshits GI, Rotem D, Kotlyar A, Porath D.

Adv Mater. 2018 Jun;30(26):e1800433. doi: 10.1002/adma.201800433. Epub 2018 May 4.

PMID:
29726045
7.

Whole-exome sequencing of cell-free DNA and circulating tumor cells in multiple myeloma.

Manier S, Park J, Capelletti M, Bustoros M, Freeman SS, Ha G, Rhoades J, Liu CJ, Huynh D, Reed SC, Gydush G, Salem KZ, Rotem D, Freymond C, Yosef A, Perilla-Glen A, Garderet L, Van Allen EM, Kumar S, Love JC, Getz G, Adalsteinsson VA, Ghobrial IM.

Nat Commun. 2018 Apr 27;9(1):1691. doi: 10.1038/s41467-018-04001-5.

8.

Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer.

Stover DG, Parsons HA, Ha G, Freeman SS, Barry WT, Guo H, Choudhury AD, Gydush G, Reed SC, Rhoades J, Rotem D, Hughes ME, Dillon DA, Partridge AH, Wagle N, Krop IE, Getz G, Golub TR, Love JC, Winer EP, Tolaney SM, Lin NU, Adalsteinsson VA.

J Clin Oncol. 2018 Feb 20;36(6):543-553. doi: 10.1200/JCO.2017.76.0033. Epub 2018 Jan 3.

9.

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors.

Adalsteinsson VA, Ha G, Freeman SS, Choudhury AD, Stover DG, Parsons HA, Gydush G, Reed SC, Rotem D, Rhoades J, Loginov D, Livitz D, Rosebrock D, Leshchiner I, Kim J, Stewart C, Rosenberg M, Francis JM, Zhang CZ, Cohen O, Oh C, Ding H, Polak P, Lloyd M, Mahmud S, Helvie K, Merrill MS, Santiago RA, O'Connor EP, Jeong SH, Leeson R, Barry RM, Kramkowski JF, Zhang Z, Polacek L, Lohr JG, Schleicher M, Lipscomb E, Saltzman A, Oliver NM, Marini L, Waks AG, Harshman LC, Tolaney SM, Van Allen EM, Winer EP, Lin NU, Nakabayashi M, Taplin ME, Johannessen CM, Garraway LA, Golub TR, Boehm JS, Wagle N, Getz G, Love JC, Meyerson M.

Nat Commun. 2017 Nov 6;8(1):1324. doi: 10.1038/s41467-017-00965-y.

10.

Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma.

Pectasides E, Stachler MD, Derks S, Liu Y, Maron S, Islam M, Alpert L, Kwak H, Kindler H, Polite B, Sharma MR, Allen K, O'Day E, Lomnicki S, Maranto M, Kanteti R, Fitzpatrick C, Weber C, Setia N, Xiao SY, Hart J, Nagy RJ, Kim KM, Choi MG, Min BH, Nason KS, O'Keefe L, Watanabe M, Baba H, Lanman R, Agoston AT, Oh DJ, Dunford A, Thorner AR, Ducar MD, Wollison BM, Coleman HA, Ji Y, Posner MC, Roggin K, Turaga K, Chang P, Hogarth K, Siddiqui U, Gelrud A, Ha G, Freeman SS, Rhoades J, Reed S, Gydush G, Rotem D, Davison J, Imamura Y, Adalsteinsson V, Lee J, Bass AJ, Catenacci DV.

Cancer Discov. 2018 Jan;8(1):37-48. doi: 10.1158/2159-8290.CD-17-0395. Epub 2017 Oct 4.

11.

Magnetic Nanoplatelet-Based Spin Memory Device Operating at Ambient Temperatures.

Koplovitz G, Primc D, Ben Dor O, Yochelis S, Rotem D, Porath D, Paltiel Y.

Adv Mater. 2017 May;29(17). doi: 10.1002/adma.201606748. Epub 2017 Mar 3.

PMID:
28256757
12.

Tunable Length and Optical Properties of CsPbX3 (X = Cl, Br, I) Nanowires with a Few Unit Cells.

Amgar D, Stern A, Rotem D, Porath D, Etgar L.

Nano Lett. 2017 Feb 8;17(2):1007-1013. doi: 10.1021/acs.nanolett.6b04381. Epub 2017 Jan 23.

PMID:
28094960
13.

Atomic force microscopy characterization of kinase-mediated phosphorylation of a peptide monolayer.

Zhuravel R, Amit E, Elbaz S, Rotem D, Chen YJ, Friedler A, Yitzchaik S, Porath D.

Sci Rep. 2016 Nov 14;6:36793. doi: 10.1038/srep36793.

14.

DNA-Metalization: Synthesis and Properties of Novel Silver-Containing DNA Molecules (Adv. Mater. 24/2016).

Eidelshtein G, Fardian-Melamed N, Gutkin V, Basmanov D, Klinov D, Rotem D, Levi-Kalisman Y, Porath D, Kotlyar A.

Adv Mater. 2016 Jun;28(24):4944. doi: 10.1002/adma.201670170.

PMID:
27311096
15.

Synthesis and Properties of Novel Silver-Containing DNA Molecules.

Eidelshtein G, Fardian-Melamed N, Gutkin V, Basmanov D, Klinov D, Rotem D, Levi-Kalisman Y, Porath D, Kotlyar A.

Adv Mater. 2016 Jun;28(24):4839-44. doi: 10.1002/adma.201505049. Epub 2016 Apr 26.

PMID:
27116695
16.

New technologies for DNA analysis--a review of the READNA Project.

McGinn S, Bauer D, Brefort T, Dong L, El-Sagheer A, Elsharawy A, Evans G, Falk-Sörqvist E, Forster M, Fredriksson S, Freeman P, Freitag C, Fritzsche J, Gibson S, Gullberg M, Gut M, Heath S, Heath-Brun I, Heron AJ, Hohlbein J, Ke R, Lancaster O, Le Reste L, Maglia G, Marie R, Mauger F, Mertes F, Mignardi M, Moens L, Oostmeijer J, Out R, Pedersen JN, Persson F, Picaud V, Rotem D, Schracke N, Sengenes J, Stähler PF, Stade B, Stoddart D, Teng X, Veal CD, Zahra N, Bayley H, Beier M, Brown T, Dekker C, Ekström B, Flyvbjerg H, Franke A, Guenther S, Kapanidis AN, Kaye J, Kristensen A, Lehrach H, Mangion J, Sauer S, Schyns E, Tost J, van Helvoort JM, van der Zaag PJ, Tegenfeldt JO, Brookes AJ, Mir K, Nilsson M, Willcocks JP, Gut IG.

N Biotechnol. 2016 May 25;33(3):311-30. doi: 10.1016/j.nbt.2015.10.003. Epub 2015 Oct 26. Review.

PMID:
26514324
17.

Integrating proteomics with electrochemistry for identifying kinase biomarkers.

Amit E, Obena R, Wang YT, Zhuravel R, Reyes AJF, Elbaz S, Rotem D, Porath D, Friedler A, Chen YJ, Yitzchaik S.

Chem Sci. 2015 Aug 1;6(8):4756-4766. doi: 10.1039/c5sc00560d. Epub 2015 May 22.

18.

Long-range charge transport in single G-quadruplex DNA molecules.

Livshits GI, Stern A, Rotem D, Borovok N, Eidelshtein G, Migliore A, Penzo E, Wind SJ, Di Felice R, Skourtis SS, Cuevas JC, Gurevich L, Kotlyar AB, Porath D.

Nat Nanotechnol. 2014 Dec;9(12):1040-6. doi: 10.1038/nnano.2014.246. Epub 2014 Oct 26.

PMID:
25344689
19.

Single-molecule analysis of chirality in a multicomponent reaction network.

Steffensen MB, Rotem D, Bayley H.

Nat Chem. 2014 Jul;6(7):603-7. doi: 10.1038/nchem.1949. Epub 2014 May 18.

PMID:
24950330
20.

Monitoring the HIV-1 integrase enzymatic activity using atomic force microscopy in a 2LTR system.

Guy S, Rotem D, Hayouka Z, Gabizon R, Levin A, Zemel L, Loyter A, Porath D, Friedler A.

Chem Commun (Camb). 2013 Apr 18;49(30):3113-5. doi: 10.1039/c3cc40748a. Epub 2013 Mar 6.

PMID:
23463374
21.

Quasi 3D imaging of DNA-gold nanoparticle tetrahedral structures.

Stern A, Rotem D, Popov I, Porath D.

J Phys Condens Matter. 2012 Apr 25;24(16):164203. doi: 10.1088/0953-8984/24/16/164203. Epub 2012 Mar 30.

PMID:
22465965
22.

Protein detection by nanopores equipped with aptamers.

Rotem D, Jayasinghe L, Salichou M, Bayley H.

J Am Chem Soc. 2012 Feb 8;134(5):2781-7. doi: 10.1021/ja2105653. Epub 2012 Jan 26.

23.

Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores.

Hall AR, Scott A, Rotem D, Mehta KK, Bayley H, Dekker C.

Nat Nanotechnol. 2010 Dec;5(12):874-7. doi: 10.1038/nnano.2010.237. Epub 2010 Nov 28.

24.

A primary hydrogen-deuterium isotope effect observed at the single-molecule level.

Lu S, Li WW, Rotem D, Mikhailova E, Bayley H.

Nat Chem. 2010 Nov;2(11):921-8. doi: 10.1038/nchem.821. Epub 2010 Sep 12.

PMID:
20966947
25.

Inactivation of the KcsA potassium channel explored with heterotetramers.

Rotem D, Mason A, Bayley H.

J Gen Physiol. 2010 Jan;135(1):29-42. doi: 10.1085/jgp.200910305.

26.

BchY-based degenerate primers target all types of anoxygenic photosynthetic bacteria in a single PCR.

Yutin N, Suzuki MT, Rosenberg M, Rotem D, Madigan MT, Süling J, Imhoff JF, Béjà O.

Appl Environ Microbiol. 2009 Dec;75(23):7556-9. doi: 10.1128/AEM.01014-09. Epub 2009 Oct 2.

27.

In vitro unfolding and refolding of the small multidrug transporter EmrE.

Miller D, Charalambous K, Rotem D, Schuldiner S, Curnow P, Booth PJ.

J Mol Biol. 2009 Nov 6;393(4):815-32. doi: 10.1016/j.jmb.2009.08.039. Epub 2009 Aug 21.

PMID:
19699749
28.

Parallel topology of genetically fused EmrE homodimers.

Steiner-Mordoch S, Soskine M, Solomon D, Rotem D, Gold A, Yechieli M, Adam Y, Schuldiner S.

EMBO J. 2008 Jan 9;27(1):17-26. Epub 2007 Dec 6.

29.

The fast release of sticky protons: kinetics of substrate binding and proton release in a multidrug transporter.

Adam Y, Tayer N, Rotem D, Schreiber G, Schuldiner S.

Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):17989-94. Epub 2007 Nov 2.

30.

Identification of tyrosine residues critical for the function of an ion-coupled multidrug transporter.

Rotem D, Steiner-Mordoch S, Schuldiner S.

J Biol Chem. 2006 Jul 7;281(27):18715-22. Epub 2006 May 3.

31.
32.

Functional analysis of novel multidrug transporters from human pathogens.

Ninio S, Rotem D, Schuldiner S.

J Biol Chem. 2001 Dec 21;276(51):48250-6. Epub 2001 Sep 26.

33.

In vitro monomer swapping in EmrE, a multidrug transporter from Escherichia coli, reveals that the oligomer is the functional unit.

Rotem D, Sal-man N, Schuldiner S.

J Biol Chem. 2001 Dec 21;276(51):48243-9. Epub 2001 Sep 25.

34.

Small is mighty: EmrE, a multidrug transporter as an experimental paradigm.

Schuldiner S, Granot D, Mordoch SS, Ninio S, Rotem D, Soskin M, Tate CG, Yerushalmi H.

News Physiol Sci. 2001 Jun;16:130-4. Review.

PMID:
11443233
35.

Precious things come in little packages.

Schuldiner S, Granot D, Steiner S, Ninio S, Rotem D, Soskin M, Yerushalmi H.

J Mol Microbiol Biotechnol. 2001 Apr;3(2):155-62. Review.

PMID:
11321568
36.

Urinary cytokeratin 20 as a marker for transitional cell carcinoma.

Rotem D, Cassel A, Lindenfeld N, Mecz Y, Sova Y, Resnick M, Stein A.

Eur Urol. 2000 May;37(5):601-4.

PMID:
10765100
38.

Characterization of cDNAs species encoding the Tat protein of caprine arthritis encephalitis virus.

Kalinski H, Mashiah P, Rotem D, Orzech Y, Sherman L, Miki T, Yaniv A, Gazit A, Tronick SR.

Virology. 1994 Nov 1;204(2):828-34.

PMID:
7941354

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