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Detection of an In104-like integron carrying a blaIMP-34 gene in Enterobacter cloacae isolates co-producing IMP-34 and VIM-1.

Zhou K, Yu X, Zhou Y, Song J, Ji Y, Shen P, Rossen JWA, Xiao Y.

J Antimicrob Chemother. 2019 Jun 14. pii: dkz240. doi: 10.1093/jac/dkz240. [Epub ahead of print] No abstract available.


Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study.

Damasco PV, Correal JCD, Cruz-Campos ACD, Wajsbrot BR, Cunha RGD, Fonseca AGD, Castier MB, Fortes CQ, Jazbick JC, Lemos ERS, Rossen JW, Leão RS, Hirata Junior R, Guaraldi ALM.

Rev Soc Bras Med Trop. 2019 Jun 6;52:e2018375. doi: 10.1590/0037-8682-0375-2018.


A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification.

Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N.

Front Microbiol. 2019 Apr 16;10:620. doi: 10.3389/fmicb.2019.00620. eCollection 2019.


Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2019 Apr 17;9(1):6406. doi: 10.1038/s41598-019-42134-9.


Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates.

Veloo ACM, Baas WH, Haan FJ, Coco J, Rossen JW.

Clin Microbiol Infect. 2019 Feb 22. pii: S1198-743X(19)30083-7. doi: 10.1016/j.cmi.2019.02.017. [Epub ahead of print]


Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing.

Rossen JWA, Dombrecht J, Vanfleteren D, De Bruyne K, van Belkum A, Rosema S, Lokate M, Bathoorn E, Reuter S, Grundmann H, Ertel J, Higgins PG, Seifert H.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01652-18. doi: 10.1128/JCM.01652-18. Print 2019 Apr.


Proof of an Outer Membrane Target of the Efflux Inhibitor Phe-Arg-β-Naphthylamide from Random Mutagenesis.

Schuster S, Bohnert JA, Vavra M, Rossen JW, Kern WV.

Molecules. 2019 Jan 29;24(3). pii: E470. doi: 10.3390/molecules24030470.


Association between rectal colonization with Highly Resistant Gram-negative Rods (HR-GNRs) and subsequent infection with HR-GNRs in clinical patients: A one year historical cohort study.

Souverein D, Euser SM, Herpers BL, Kluytmans J, Rossen JWA, Den Boer JW.

PLoS One. 2019 Jan 25;14(1):e0211016. doi: 10.1371/journal.pone.0211016. eCollection 2019.


Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands.

Ravensbergen SJ, Louka C, Ott A, Rossen JW, Cornish D, Pournaras S, Bathoorn E, Stienstra Y.

Antimicrob Resist Infect Control. 2019 Jan 7;8:6. doi: 10.1186/s13756-018-0455-5. eCollection 2019.


The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G.

Version 2. F1000Res. 2018 Apr 13 [revised 2018 Jan 1];7. pii: ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018.


Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment.

Colello R, Krüger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverría AI, Padola NL.

Microorganisms. 2018 Sep 28;6(4). pii: E99. doi: 10.3390/microorganisms6040099.


Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements.

Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA.

J Antimicrob Chemother. 2018 Dec 1;73(12):3259-3267. doi: 10.1093/jac/dky349.


Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w. Erratum in: Sci Rep. 2019 Apr 17;9(1):6406.


Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands.

Huizinga P, Schrauwen E, García-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J.

PLoS One. 2018 Aug 30;13(8):e0203338. doi: 10.1371/journal.pone.0203338. eCollection 2018.


Sonication of heart valves detects more bacteria in infective endocarditis.

Gomes A, van Oosten M, Bijker KLB, Boiten KE, Salomon EN, Rosema S, Rossen JWA, Natour E, Douglas YL, Kampinga GA, van Assen S, Sinha B.

Sci Rep. 2018 Aug 28;8(1):12967. doi: 10.1038/s41598-018-31029-w.


Typing and Species Identification of Clinical Klebsiella Isolates by Fourier Transform Infrared Spectroscopy and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.

Dinkelacker AG, Vogt S, Oberhettinger P, Mauder N, Rau J, Kostrzewa M, Rossen JWA, Autenrieth IB, Peter S, Liese J.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00843-18. doi: 10.1128/JCM.00843-18. Print 2018 Nov.


An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.


Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing.

Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, García-Cobos S, Friedrich AW.

Microorganisms. 2018 Jul 18;6(3). pii: E71. doi: 10.3390/microorganisms6030071.


Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.

van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00510-18. doi: 10.1128/JCM.00510-18. Print 2018 Oct.


Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter.

Veloo ACM, Chlebowicz M, Winter HLJ, Bathoorn D, Rossen JWA.

J Antimicrob Chemother. 2018 Oct 1;73(10):2687-2690. doi: 10.1093/jac/dky236.


Fosfomycin Etest for Enterobacteriaceae: Interobserver and interlaboratory agreement.

van Mens SP, Ten Doesschate T, Kluytmans-van den Bergh MFQ, Mouton JW, Rossen JWA, Verhulst C, Bonten MJM, Kluytmans JAJW.

Int J Antimicrob Agents. 2018 Nov;52(5):678-681. doi: 10.1016/j.ijantimicag.2018.06.014. Epub 2018 Jun 27.


Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics.

Lizarazo E, Couto N, Vincenti-Gonzalez M, Raangs EC, Jaenisch T, Friedrich AW, Tami A, Rossen JW.

Genome Announc. 2018 Jun 21;6(25). pii: e00545-18. doi: 10.1128/genomeA.00545-18.


Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches.

Peker N, Couto N, Sinha B, Rossen JW.

Clin Microbiol Infect. 2018 Sep;24(9):944-955. doi: 10.1016/j.cmi.2018.05.007. Epub 2018 May 19. Review.


Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-García A, Rossen JW, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.


Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics.

Couto N, Chlebowicz MA, Raangs EC, Friedrich AW, Rossen JW.

Genome Announc. 2018 Apr 5;6(14). pii: e00036-18. doi: 10.1128/genomeA.00036-18.


ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab.

Motro Y, Carriço JA, Friedrich AW, Rossen JWA, Moran-Gilad J.

Microbes Infect. 2018 May;20(5):275-280. doi: 10.1016/j.micinf.2018.02.006. Epub 2018 Mar 17. No abstract available.


[Polymicrobial infections: ecosystems with special properties].

de Vos MGJ, de Visser JAGM, Rossen JWA, Zwaan BJ.

Ned Tijdschr Geneeskd. 2018;162:D2224. Dutch.


There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis.

Gabarrini G, Palma Medina LM, Stobernack T, Prins RC, du Teil Espina M, Kuipers J, Chlebowicz MA, Rossen JWA, van Winkelhoff AJ, van Dijl JM.

Virulence. 2018 Jan 1;9(1):456-464. doi: 10.1080/21505594.2017.1421827.


Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil.

Campos ACC, Andrade NL, Ferdous M, Chlebowicz MA, Santos CC, Correal JCD, Lo Ten Foe JR, Rosa ACP, Damasco PV, Friedrich AW, Rossen JWA.

Front Microbiol. 2018 Feb 16;9:243. doi: 10.3389/fmicb.2018.00243. eCollection 2018.


ArgO145, a Stx2a prophage of a bovine O145:H- STEC strain, is closely related to phages of virulent human strains.

Krüger A, Burgán J, Friedrich AW, Rossen JWA, Lucchesi PMA.

Infect Genet Evol. 2018 Jun;60:126-132. doi: 10.1016/j.meegid.2018.02.024. Epub 2018 Feb 21.


Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.

Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S.

Front Cell Infect Microbiol. 2018 Feb 6;8:25. doi: 10.3389/fcimb.2018.00025. eCollection 2018.


Silent transmission of an IS1294b-deactivated mcr-1 gene with inducible colistin resistance.

Zhou K, Luo Q, Wang Q, Huang C, Lu H, Rossen JWA, Xiao Y, Li L.

Int J Antimicrob Agents. 2018 Jun;51(6):822-828. doi: 10.1016/j.ijantimicag.2018.01.004. Epub 2018 Jan 12.


Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis.

Peker N, Rossen JWA, Deurenberg RH, Langereis PC, Raangs EGC, Kluytmans JA, Friedrich AW, Veenemans J, Sinha B.

Microorganisms. 2018 Jan 11;6(1). pii: E6. doi: 10.3390/microorganisms6010006.


Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the blaOXA-427 Carbapenemase Gene.

Desmet S, Nepal S, van Dijl JM, Van Ranst M, Chlebowicz MA, Rossen JW, Van Houdt JKJ, Maes P, Lagrou K, Bathoorn E.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01448-17. doi: 10.1128/AAC.01448-17. Print 2018 Mar.


Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates.

Top J, Sinnige JC, Brouwer EC, Werner G, Corander J, Severin JA, Jansen R, Bathoorn E, Bonten MJM, Rossen JWA, Willems RJL.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01793-17. doi: 10.1128/AAC.01793-17. Print 2018 Mar.


Conserved Citrullinating Exoenzymes in Porphyromonas Species.

Gabarrini G, Chlebowicz MA, Vega Quiroz ME, Veloo ACM, Rossen JWA, Harmsen HJM, Laine ML, van Dijl JM, van Winkelhoff AJ.

J Dent Res. 2018 May;97(5):556-562. doi: 10.1177/0022034517747575. Epub 2018 Jan 3.


Identification of a KPC-9-producing Klebsiella pneumoniae ST258 cluster among KPC-2-producing isolates of an ongoing outbreak in Northwestern Greece: a retrospective study.

Gartzonika K, Rossen JWA, Sakkas H, Rosema S, Priavali E, Friedrich AW, Levidiotou S, Bathoorn E.

Clin Microbiol Infect. 2018 May;24(5):558-560. doi: 10.1016/j.cmi.2017.12.007. Epub 2017 Dec 21. No abstract available.


A novel Tn1696-like composite transposon (Tn6404) harboring bla IMP-4 in a Klebsiella pneumoniae isolate carrying a rare ESBL gene bla SFO-1.

Zhou K, Yu W, Shen P, Lu H, Wang B, Rossen JWA, Xiao Y.

Sci Rep. 2017 Dec 11;7(1):17321. doi: 10.1038/s41598-017-17641-2.


Efficacy of Home Telemonitoring versus Conventional Follow-up: A Randomized Controlled Trial among Teenagers with Inflammatory Bowel Disease.

Heida A, Dijkstra A, Muller Kobold A, Rossen JW, Kindermann A, Kokke F, de Meij T, Norbruis O, Weersma RK, Wessels M, Hummel T, Escher J, van Wering H, Hendriks D, Mearin L, Groen H, Verkade HJ, van Rheenen PF.

J Crohns Colitis. 2018 Mar 28;12(4):432-441. doi: 10.1093/ecco-jcc/jjx169.


Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology.

Rossen JWA, Friedrich AW, Moran-Gilad J; ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD).

Clin Microbiol Infect. 2018 Apr;24(4):355-360. doi: 10.1016/j.cmi.2017.11.001. Epub 2017 Nov 5. Review.


Expansion of KPC-producing Klebsiella pneumoniae with various mgrB mutations giving rise to colistin resistance: the role of ISL3 on plasmids.

Giordano C, Barnini S, Tsioutis C, Chlebowicz MA, Scoulica EV, Gikas A, Rossen JW, Friedrich AW, Bathoorn E.

Int J Antimicrob Agents. 2018 Feb;51(2):260-265. doi: 10.1016/j.ijantimicag.2017.10.011. Epub 2017 Oct 27.


Characterization of the population structure, drug resistance mechanisms and plasmids of the community-associated Enterobacter cloacae complex in China.

Zhou K, Yu W, Cao X, Shen P, Lu H, Luo Q, Rossen JWA, Xiao Y.

J Antimicrob Chemother. 2018 Jan 1;73(1):66-76. doi: 10.1093/jac/dkx361.


First report of OXA-48-producing Escherichia coli in Croatia and confirmed intergenic transfer of a plasmid-carrying blaOXA-48 from Klebsiella pneumoniae.

Bošnjak Z, Chlebowicz MA, Mareković I, Rezo Vranješ V, Rossen JW, Budimir A.

Infect Dis (Lond). 2018 Apr;50(4):313-316. doi: 10.1080/23744235.2017.1395067. Epub 2017 Oct 26. No abstract available.


Integrated Stewardship Model Comprising Antimicrobial, Infection Prevention, and Diagnostic Stewardship (AID Stewardship).

Dik JH, Poelman R, Friedrich AW, Niesters HGM, Rossen JWA, Sinha B.

J Clin Microbiol. 2017 Nov;55(11):3306-3307. doi: 10.1128/JCM.01283-17. No abstract available.


Extensive colonization with carbapenemase-producing microorganisms in Romanian burn patients: infectious consequences from the Colectiv fire disaster.

Pirii LE, Friedrich AW, Rossen JWA, Vogels W, Beerthuizen GIJM, Nieuwenhuis MK, Kooistra-Smid AMD, Bathoorn E.

Eur J Clin Microbiol Infect Dis. 2018 Jan;37(1):175-183. doi: 10.1007/s10096-017-3118-1. Epub 2017 Oct 23.


Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.

Amissah NA, Buultjens AH, Ablordey A, van Dam L, Opoku-Ware A, Baines SL, Bulach D, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, Seemann T, van Dijl JM, Stienstra Y, Stinear TP, Rossen JW.

Front Microbiol. 2017 Oct 6;8:1906. doi: 10.3389/fmicb.2017.01906. eCollection 2017.


Epidemiology of Extended-Spectrum β-Lactamase-Producing E. coli and Vancomycin-Resistant Enterococci in the Northern Dutch-German Cross-Border Region.

Zhou X, García-Cobos S, Ruijs GJHM, Kampinga GA, Arends JP, Borst DM, Möller LV, Holman ND, Schuurs TA, Bruijnesteijn van Coppenraet LE, Weel JF, van Zeijl JH, Köck R, Rossen JWA, Friedrich AW.

Front Microbiol. 2017 Oct 5;8:1914. doi: 10.3389/fmicb.2017.01914. eCollection 2017.


Genetic loci of Staphylococcus aureus associated with anti-neutrophil cytoplasmic autoantibody (ANCA)-associated vasculitides.

Glasner C, de Goffau MC, van Timmeren MM, Schulze ML, Jansen B, Tavakol M, van Wamel WJB, Stegeman CA, Kallenberg CGM, Arends JP, Rossen JW, Heeringa P, van Dijl JM.

Sci Rep. 2017 Sep 22;7(1):12211. doi: 10.1038/s41598-017-12450-z.


Real-time genomic investigation underlying the public health response to a Shiga toxin-producing Escherichia coli O26:H11 outbreak in a nursery.

Moran-Gilad J, Rokney A, Danino D, Ferdous M, Alsana F, Baum M, Dukhan L, Agmon V, Anuka E, Valinsky L, Yishay R, Grotto I, Rossen JWA, Gdalevich M.

Epidemiol Infect. 2017 Oct;145(14):2998-3006. doi: 10.1017/S0950268817001923. Epub 2017 Sep 19.


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