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Items: 1 to 50 of 256

1.

Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages.

da Cruz Campos AC, Cavallo FM, L Andrade N, van Dijl JM, Couto N, Zrimec J, Lo Ten Foe JR, P Rosa AC, V Damasco P, Friedrich AW, Chlebowicz-Flissikowska MA, Rossen JWA.

Microorganisms. 2019 Nov 6;7(11). pii: E534. doi: 10.3390/microorganisms7110534.

2.

Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae.

Giordano C, Klak A, Barnini S, Chlebowicz MA, Menconi M, Rossen JW, Friedrich AW, Bathoorn E.

mSphere. 2019 Nov 6;4(6). pii: e00551-19. doi: 10.1128/mSphere.00551-19.

3.

Temporal Trends and Clinical Outcomes of Transcatheter Aortic Valve Replacement in Nonagenarians.

Mentias A, Saad M, Desai MY, Horwitz PA, Rossen JD, Panaich S, Elbadawi A, Qazi A, Sorajja P, Jneid H, Kapadia S, London B, Vaughan Sarrazin MS.

J Am Heart Assoc. 2019 Nov 5;8(21):e013685. doi: 10.1161/JAHA.119.013685. Epub 2019 Oct 31.

4.

Associations of physical activity and sedentary behavior with cardiometabolic biomarkers in prediabetes and type 2 diabetes: a compositional data analysis.

Rossen J, Von Rosen P, Johansson UB, Brismar K, Hagströmer M.

Phys Sportsmed. 2019 Nov 12:1-7. doi: 10.1080/00913847.2019.1684811. [Epub ahead of print]

PMID:
31663410
5.

Revealing the Virulence Potential of Clinical and Environmental Aspergillus fumigatus Isolates Using Whole-Genome Sequencing.

Puértolas-Balint F, Rossen JWA, Oliveira Dos Santos C, Chlebowicz MMA, Raangs EC, van Putten ML, Sola-Campoy PJ, Han L, Schmidt M, García-Cobos S.

Front Microbiol. 2019 Sep 4;10:1970. doi: 10.3389/fmicb.2019.01970. eCollection 2019.

6.

Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing.

Fleres G, Couto N, Schuele L, Chlebowicz MA, Mendes CI, van der Sluis LWM, Rossen JWA, Friedrich AW, García-Cobos S.

J Antimicrob Chemother. 2019 Aug 23. pii: dkz363. doi: 10.1093/jac/dkz363. [Epub ahead of print] No abstract available.

PMID:
31504580
7.

Contact precautions in single-bed or multiple-bed rooms for patients with extended-spectrum β-lactamase-producing Enterobacteriaceae in Dutch hospitals: a cluster-randomised, crossover, non-inferiority study.

Kluytmans-van den Bergh MFQ, Bruijning-Verhagen PCJ, Vandenbroucke-Grauls CMJE, de Brauwer EIGB, Buiting AGM, Diederen BM, van Elzakker EPM, Friedrich AW, Hopman J, Al Naiemi N, Rossen JWA, Ruijs GJHM, Savelkoul PHM, Verhulst C, Vos MC, Voss A, Bonten MJM, Kluytmans JAJW; SoM Study Group.

Lancet Infect Dis. 2019 Oct;19(10):1069-1079. doi: 10.1016/S1473-3099(19)30262-2. Epub 2019 Aug 23.

PMID:
31451419
8.

Commonality of Multidrug-Resistant Klebsiella pneumoniae ST348 Isolates in Horses and Humans in Portugal.

Trigo da Roza F, Couto N, Carneiro C, Cunha E, Rosa T, Magalhães M, Tavares L, Novais Â, Peixe L, Rossen JW, Lamas LP, Oliveira M.

Front Microbiol. 2019 Jul 18;10:1657. doi: 10.3389/fmicb.2019.01657. eCollection 2019.

9.

Second Generation Drug-Eluting Stents for Endovascular Treatment of Ostial Vertebral Artery Stenosis: A Single Center Experience.

Ortega-Gutierrez S, Lopez GV, Edgell RC, Mendez AA, Dandapat S, Roa JA, Zevallos CB, Holcombe AL, Hasan D, Derdeyn CP, Rossen J, Samaniego EA.

Front Neurol. 2019 Jul 16;10:746. doi: 10.3389/fneur.2019.00746. eCollection 2019.

10.

Bradycardia and Asystole in Patients Undergoing Symptomatic Chronically Occluded Internal Carotid Artery Recanalization.

Hudson JS, Zanaty M, Wadman V, Nakagawa D, Ishii D, Roa JA, Al Kasabz S, Limaye K, Rossen JD, Jabbour P, Adams HP Jr, Samaniego EA, Hasan DM.

World Neurosurg. 2019 Nov;131:e211-e217. doi: 10.1016/j.wneu.2019.07.125. Epub 2019 Jul 23.

PMID:
31349074
11.

Detection of an In104-like integron carrying a blaIMP-34 gene in Enterobacter cloacae isolates co-producing IMP-34 and VIM-1.

Zhou K, Yu X, Zhou Y, Song J, Ji Y, Shen P, Rossen JWA, Xiao Y.

J Antimicrob Chemother. 2019 Sep 1;74(9):2812-2814. doi: 10.1093/jac/dkz240. No abstract available.

PMID:
31199433
12.

Epidemiological and clinical profile of infective endocarditis at a Brazilian tertiary care center: an eight-year prospective study.

Damasco PV, Correal JCD, Cruz-Campos ACD, Wajsbrot BR, Cunha RGD, Fonseca AGD, Castier MB, Fortes CQ, Jazbick JC, Lemos ERS, Rossen JW, Leão RS, Hirata Junior R, Guaraldi ALM.

Rev Soc Bras Med Trop. 2019 Jun 6;52:e2018375. doi: 10.1590/0037-8682-0375-2018.

13.

Author Correction: Mitochondrial metabolism promotes adaptation to proteotoxic stress.

Tsvetkov P, Detappe A, Cai K, Keys HR, Brune Z, Ying W, Thiru P, Reidy M, Kugener G, Rossen J, Kocak M, Kory N, Tsherniak A, Santagata S, Whitesell L, Ghobrial IM, Markley JL, Lindquist S, Golub TR.

Nat Chem Biol. 2019 Jul;15(7):757. doi: 10.1038/s41589-019-0315-5.

PMID:
31164776
14.

Mitochondrial metabolism promotes adaptation to proteotoxic stress.

Tsvetkov P, Detappe A, Cai K, Keys HR, Brune Z, Ying W, Thiru P, Reidy M, Kugener G, Rossen J, Kocak M, Kory N, Tsherniak A, Santagata S, Whitesell L, Ghobrial IM, Markley JL, Lindquist S, Golub TR.

Nat Chem Biol. 2019 Jul;15(7):681-689. doi: 10.1038/s41589-019-0291-9. Epub 2019 May 27. Erratum in: Nat Chem Biol. 2019 Jun 4;:.

PMID:
31133756
15.

Post-Structuring Radiology Reports of Breast Cancer Patients for Clinical Quality Assurance.

Pathak S, Rossen JV, Vijlbrief O, Geerdink J, Seifert C, van Keulen M.

IEEE/ACM Trans Comput Biol Bioinform. 2019 May 3. doi: 10.1109/TCBB.2019.2914678. [Epub ahead of print]

PMID:
31059453
16.

A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification.

Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N.

Front Microbiol. 2019 Apr 16;10:620. doi: 10.3389/fmicb.2019.00620. eCollection 2019.

17.

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2019 Apr 17;9(1):6406. doi: 10.1038/s41598-019-42134-9.

18.
19.

Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates.

Veloo ACM, Baas WH, Haan FJ, Coco J, Rossen JW.

Clin Microbiol Infect. 2019 Sep;25(9):1156.e9-1156.e13. doi: 10.1016/j.cmi.2019.02.017. Epub 2019 Feb 22.

20.

Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing.

Rossen JWA, Dombrecht J, Vanfleteren D, De Bruyne K, van Belkum A, Rosema S, Lokate M, Bathoorn E, Reuter S, Grundmann H, Ertel J, Higgins PG, Seifert H.

J Clin Microbiol. 2019 Mar 28;57(4). pii: e01652-18. doi: 10.1128/JCM.01652-18. Print 2019 Apr.

21.

Proof of an Outer Membrane Target of the Efflux Inhibitor Phe-Arg-β-Naphthylamide from Random Mutagenesis.

Schuster S, Bohnert JA, Vavra M, Rossen JW, Kern WV.

Molecules. 2019 Jan 29;24(3). pii: E470. doi: 10.3390/molecules24030470.

22.

Association between rectal colonization with Highly Resistant Gram-negative Rods (HR-GNRs) and subsequent infection with HR-GNRs in clinical patients: A one year historical cohort study.

Souverein D, Euser SM, Herpers BL, Kluytmans J, Rossen JWA, Den Boer JW.

PLoS One. 2019 Jan 25;14(1):e0211016. doi: 10.1371/journal.pone.0211016. eCollection 2019.

23.

Proportion of asylum seekers carrying multi-drug resistant microorganisms is persistently increased after arrival in the Netherlands.

Ravensbergen SJ, Louka C, Ott A, Rossen JW, Cornish D, Pournaras S, Bathoorn E, Stienstra Y.

Antimicrob Resist Infect Control. 2019 Jan 7;8:6. doi: 10.1186/s13756-018-0455-5. eCollection 2019.

24.

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O'Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G.

Version 2. F1000Res. 2018 Apr 13 [revised 2018 Jan 1];7. pii: ISCB Comm J-459. doi: 10.12688/f1000research.14509.2. eCollection 2018. Review.

25.

Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment.

Colello R, Krüger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverría AI, Padola NL.

Microorganisms. 2018 Sep 28;6(4). pii: E99. doi: 10.3390/microorganisms6040099.

26.

Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements.

Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA.

J Antimicrob Chemother. 2018 Dec 1;73(12):3259-3267. doi: 10.1093/jac/dky349.

PMID:
30219855
27.

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w. Erratum in: Sci Rep. 2019 Apr 17;9(1):6406.

28.

Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands.

Huizinga P, Schrauwen E, García-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J.

PLoS One. 2018 Aug 30;13(8):e0203338. doi: 10.1371/journal.pone.0203338. eCollection 2018.

29.

Sonication of heart valves detects more bacteria in infective endocarditis.

Gomes A, van Oosten M, Bijker KLB, Boiten KE, Salomon EN, Rosema S, Rossen JWA, Natour E, Douglas YL, Kampinga GA, van Assen S, Sinha B.

Sci Rep. 2018 Aug 28;8(1):12967. doi: 10.1038/s41598-018-31029-w.

30.

Typing and Species Identification of Clinical Klebsiella Isolates by Fourier Transform Infrared Spectroscopy and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry.

Dinkelacker AG, Vogt S, Oberhettinger P, Mauder N, Rau J, Kostrzewa M, Rossen JWA, Autenrieth IB, Peter S, Liese J.

J Clin Microbiol. 2018 Oct 25;56(11). pii: e00843-18. doi: 10.1128/JCM.00843-18. Print 2018 Nov.

31.

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.

32.

Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing.

Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, García-Cobos S, Friedrich AW.

Microorganisms. 2018 Jul 18;6(3). pii: E71. doi: 10.3390/microorganisms6030071.

33.

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.

van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00510-18. doi: 10.1128/JCM.00510-18. Print 2018 Oct.

34.

Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter.

Veloo ACM, Chlebowicz M, Winter HLJ, Bathoorn D, Rossen JWA.

J Antimicrob Chemother. 2018 Oct 1;73(10):2687-2690. doi: 10.1093/jac/dky236.

35.

Fosfomycin Etest for Enterobacteriaceae: Interobserver and interlaboratory agreement.

van Mens SP, Ten Doesschate T, Kluytmans-van den Bergh MFQ, Mouton JW, Rossen JWA, Verhulst C, Bonten MJM, Kluytmans JAJW.

Int J Antimicrob Agents. 2018 Nov;52(5):678-681. doi: 10.1016/j.ijantimicag.2018.06.014. Epub 2018 Jun 27.

PMID:
29958976
36.

Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics.

Lizarazo E, Couto N, Vincenti-Gonzalez M, Raangs EC, Jaenisch T, Friedrich AW, Tami A, Rossen JW.

Genome Announc. 2018 Jun 21;6(25). pii: e00545-18. doi: 10.1128/genomeA.00545-18.

37.

Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches.

Peker N, Couto N, Sinha B, Rossen JW.

Clin Microbiol Infect. 2018 Sep;24(9):944-955. doi: 10.1016/j.cmi.2018.05.007. Epub 2018 May 19. Review.

38.

Campylobacter blaseri sp. nov., isolated from common seals (Phoca vitulina).

Gilbert MJ, Zomer AL, Timmerman AJ, Spaninks MP, Rubio-García A, Rossen JW, Duim B, Wagenaar JA.

Int J Syst Evol Microbiol. 2018 May;68(5):1787-1794. doi: 10.1099/ijsem.0.002742. Epub 2018 Apr 6.

PMID:
29624164
39.

Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics.

Couto N, Chlebowicz MA, Raangs EC, Friedrich AW, Rossen JW.

Genome Announc. 2018 Apr 5;6(14). pii: e00036-18. doi: 10.1128/genomeA.00036-18.

40.

ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab.

Motro Y, Carriço JA, Friedrich AW, Rossen JWA, Moran-Gilad J.

Microbes Infect. 2018 May;20(5):275-280. doi: 10.1016/j.micinf.2018.02.006. Epub 2018 Mar 17. No abstract available.

PMID:
29555344
41.

[Polymicrobial infections: ecosystems with special properties].

de Vos MGJ, de Visser JAGM, Rossen JWA, Zwaan BJ.

Ned Tijdschr Geneeskd. 2018;162:D2224. Dutch.

PMID:
29543145
42.

Can oxytocin augmentation modify the risk of epidural analgesia by maternal age in cesarean sections?

Rossen J, Klungsøyr K, Albrechtsen S, Løkkegård E, Rasmussen S, Bergholt T, Skjeldestad FE.

Acta Obstet Gynecol Scand. 2018 Jul;97(7):872-879. doi: 10.1111/aogs.13341. Epub 2018 Apr 10.

PMID:
29512836
43.

There's no place like OM: Vesicular sorting and secretion of the peptidylarginine deiminase of Porphyromonas gingivalis.

Gabarrini G, Palma Medina LM, Stobernack T, Prins RC, du Teil Espina M, Kuipers J, Chlebowicz MA, Rossen JWA, van Winkelhoff AJ, van Dijl JM.

Virulence. 2018 Jan 1;9(1):456-464. doi: 10.1080/21505594.2017.1421827.

44.

Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil.

Campos ACC, Andrade NL, Ferdous M, Chlebowicz MA, Santos CC, Correal JCD, Lo Ten Foe JR, Rosa ACP, Damasco PV, Friedrich AW, Rossen JWA.

Front Microbiol. 2018 Feb 16;9:243. doi: 10.3389/fmicb.2018.00243. eCollection 2018.

45.

ArgO145, a Stx2a prophage of a bovine O145:H- STEC strain, is closely related to phages of virulent human strains.

Krüger A, Burgán J, Friedrich AW, Rossen JWA, Lucchesi PMA.

Infect Genet Evol. 2018 Jun;60:126-132. doi: 10.1016/j.meegid.2018.02.024. Epub 2018 Feb 21.

PMID:
29476813
46.

Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.

Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S.

Front Cell Infect Microbiol. 2018 Feb 6;8:25. doi: 10.3389/fcimb.2018.00025. eCollection 2018.

47.

Silent transmission of an IS1294b-deactivated mcr-1 gene with inducible colistin resistance.

Zhou K, Luo Q, Wang Q, Huang C, Lu H, Rossen JWA, Xiao Y, Li L.

Int J Antimicrob Agents. 2018 Jun;51(6):822-828. doi: 10.1016/j.ijantimicag.2018.01.004. Epub 2018 Jan 12.

PMID:
29339296
48.

Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis.

Peker N, Rossen JWA, Deurenberg RH, Langereis PC, Raangs EGC, Kluytmans JA, Friedrich AW, Veenemans J, Sinha B.

Microorganisms. 2018 Jan 11;6(1). pii: E6. doi: 10.3390/microorganisms6010006.

49.

Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the blaOXA-427 Carbapenemase Gene.

Desmet S, Nepal S, van Dijl JM, Van Ranst M, Chlebowicz MA, Rossen JW, Van Houdt JKJ, Maes P, Lagrou K, Bathoorn E.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01448-17. doi: 10.1128/AAC.01448-17. Print 2018 Mar.

50.

Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates.

Top J, Sinnige JC, Brouwer EC, Werner G, Corander J, Severin JA, Jansen R, Bathoorn E, Bonten MJM, Rossen JWA, Willems RJL.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01793-17. doi: 10.1128/AAC.01793-17. Print 2018 Mar.

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