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Isolation of a Novel Jumbo Bacteriophage Effective Against Klebsiella aerogenes.

Lewis R, Clooney AG, Stockdale SR, Buttimer C, Draper LA, Ross RP, Hill C.

Front Med (Lausanne). 2020 Feb 28;7:67. doi: 10.3389/fmed.2020.00067. eCollection 2020.


Antiproliferation Activity and Mechanism of c9, t11, c15-CLNA and t9, t11, c15-CLNA from Lactobacillus plantarum ZS2058 on Colon Cancer Cells.

Ren Q, Yang B, Zhu G, Wang S, Fu C, Zhang H, Ross RP, Stanton C, Chen H, Chen W.

Molecules. 2020 Mar 9;25(5). pii: E1225. doi: 10.3390/molecules25051225.


Comparative Genomics of Pediococcus pentosaceus Isolated From Different Niches Reveals Genetic Diversity in Carbohydrate Metabolism and Immune System.

Jiang J, Yang B, Ross RP, Stanton C, Zhao J, Zhang H, Chen W.

Front Microbiol. 2020 Feb 26;11:253. doi: 10.3389/fmicb.2020.00253. eCollection 2020.


Replacing fishmeal with plant protein in Atlantic salmon (Salmo salar) diets by supplementation with fish protein hydrolysate.

Egerton S, Wan A, Murphy K, Collins F, Ahern G, Sugrue I, Busca K, Egan F, Muller N, Whooley J, McGinnity P, Culloty S, Ross RP, Stanton C.

Sci Rep. 2020 Mar 6;10(1):4194. doi: 10.1038/s41598-020-60325-7.


c9, t11, c15-CLNA and t9, t11, c15-CLNA from Lactobacillus plantarum ZS2058 Ameliorate Dextran Sodium Sulfate-Induced Colitis in Mice.

Ren Q, Yang B, Zhang H, Ross RP, Stanton C, Chen H, Chen W.

J Agric Food Chem. 2020 Mar 25;68(12):3758-3769. doi: 10.1021/acs.jafc.0c00573. Epub 2020 Mar 13.


Expansion of known ssRNA phage genomes: From tens to over a thousand.

Callanan J, Stockdale SR, Shkoporov A, Draper LA, Ross RP, Hill C.

Sci Adv. 2020 Feb 7;6(6):eaay5981. doi: 10.1126/sciadv.aay5981. eCollection 2020 Feb.


The Progress of Multi-Omics Technologies: Determining Function in Lactic Acid Bacteria Using a Systems Level Approach.

O'Donnell ST, Ross RP, Stanton C.

Front Microbiol. 2020 Jan 28;10:3084. doi: 10.3389/fmicb.2019.03084. eCollection 2019. Review.


Gut microbiome of a porcine model of metabolic syndrome and HF-pEF.

O'Donovan AN, Herisson FM, Fouhy F, Ryan PM, Whelan D, Johnson CN, Cluzel G, Ross RP, Stanton C, Caplice NM.

Am J Physiol Heart Circ Physiol. 2020 Mar 1;318(3):H590-H603. doi: 10.1152/ajpheart.00512.2019. Epub 2020 Feb 7.


Author Correction: Recombinant Incretin-Secreting Microbe Improves Metabolic Dysfunction in High-Fat Diet Fed Rodents.

Ryan PM, Patterson E, Kent RM, Stack H, O'Connor PM, Murphy K, Peterson VL, Mandal R, Wishart DS, Dinan TG, Cryan JF, Seeley RJ, Stanton C, Ross RP.

Sci Rep. 2020 Feb 6;10(1):2392. doi: 10.1038/s41598-020-59133-w.


Nisin Z and lacticin 3147 improve efficacy of antibiotics against clinically significant bacteria.

Ellis JC, Ross RP, Hill C.

Future Microbiol. 2019 Dec;14:1573-1587. doi: 10.2217/fmb-2019-0153. Epub 2020 Feb 5.


Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa.

Zhou X, Yang B, Stanton C, Ross RP, Zhao J, Zhang H, Chen W.

BMC Genomics. 2020 Feb 3;21(1):119. doi: 10.1186/s12864-020-6527-y.


Antimicrobials for food and feed; a bacteriocin perspective.

O'Connor PM, Kuniyoshi TM, Oliveira RP, Hill C, Ross RP, Cotter PD.

Curr Opin Biotechnol. 2020 Feb;61:160-167. doi: 10.1016/j.copbio.2019.12.023. Epub 2020 Jan 20. Review.


Encapsulated cyclosporine does not change the composition of the human microbiota when assessed ex vivo and in vivo.

O'Reilly C, O'Sullivan Ó, Cotter PD, O'Connor PM, Shanahan F, Cullen A, Rea MC, Hill C, Coulter I, Ross RP.

J Med Microbiol. 2020 Jan 20. doi: 10.1099/jmm.0.001130. [Epub ahead of print]


Comparative Genomics Analysis of Lactobacillus ruminis from Different Niches.

Wang S, Yang B, Ross RP, Stanton C, Zhao J, Zhang H, Chen W.

Genes (Basel). 2020 Jan 8;11(1). pii: E70. doi: 10.3390/genes11010070.


Actinomyces Produces Defensin-Like Bacteriocins (Actifensins) with a Highly Degenerate Structure and Broad Antimicrobial Activity.

Sugrue I, O'Connor PM, Hill C, Stanton C, Ross RP.

J Bacteriol. 2020 Jan 29;202(4). pii: e00529-19. doi: 10.1128/JB.00529-19. Print 2020 Jan 29.


Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease.

Clooney AG, Sutton TDS, Shkoporov AN, Holohan RK, Daly KM, O'Regan O, Ryan FJ, Draper LA, Plevy SE, Ross RP, Hill C.

Cell Host Microbe. 2019 Dec 11;26(6):764-778.e5. doi: 10.1016/j.chom.2019.10.009. Epub 2019 Nov 19.


Nisin J, a Novel Natural Nisin Variant, Is Produced by Staphylococcus capitis Sourced from the Human Skin Microbiota.

O'Sullivan JN, O'Connor PM, Rea MC, O'Sullivan O, Walsh CJ, Healy B, Mathur H, Field D, Hill C, Ross RP.

J Bacteriol. 2020 Jan 15;202(3). pii: e00639-19. doi: 10.1128/JB.00639-19. Print 2020 Jan 15.


Gamma-aminobutyric acid-producing lactobacilli positively affect metabolism and depressive-like behaviour in a mouse model of metabolic syndrome.

Patterson E, Ryan PM, Wiley N, Carafa I, Sherwin E, Moloney G, Franciosi E, Mandal R, Wishart DS, Tuohy K, Ross RP, Cryan JF, Dinan TG, Stanton C.

Sci Rep. 2019 Nov 8;9(1):16323. doi: 10.1038/s41598-019-51781-x.


Orally Administered CLA Ameliorates DSS-Induced Colitis in Mice via Intestinal Barrier Improvement, Oxidative Stress Reduction, and Inflammatory Cytokine and Gut Microbiota Modulation.

Chen Y, Yang B, Ross RP, Jin Y, Stanton C, Zhao J, Zhang H, Chen W.

J Agric Food Chem. 2019 Dec 4;67(48):13282-13298. doi: 10.1021/acs.jafc.9b05744. Epub 2019 Nov 15.


The Effect of a Commercially Available Bacteriophage and Bacteriocin on Listeria monocytogenes in Coleslaw.

Lewis R, Bolocan AS, Draper LA, Ross RP, Hill C.

Viruses. 2019 Oct 23;11(11). pii: E977. doi: 10.3390/v11110977.


Use of Lactic Acid Bacteria to Reduce Methane Production in Ruminants, a Critical Review.

Doyle N, Mbandlwa P, Kelly WJ, Attwood G, Li Y, Ross RP, Stanton C, Leahy S.

Front Microbiol. 2019 Oct 1;10:2207. doi: 10.3389/fmicb.2019.02207. eCollection 2019. Review.


A Live Bio-Therapeutic for Mastitis, Containing Lactococcus lactis DPC3147 With Comparable Efficacy to Antibiotic Treatment.

Kitching M, Mathur H, Flynn J, Byrne N, Dillon P, Sayers R, Rea MC, Hill C, Ross RP.

Front Microbiol. 2019 Sep 27;10:2220. doi: 10.3389/fmicb.2019.02220. eCollection 2019.


The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific.

Shkoporov AN, Clooney AG, Sutton TDS, Ryan FJ, Daly KM, Nolan JA, McDonnell SA, Khokhlova EV, Draper LA, Forde A, Guerin E, Velayudhan V, Ross RP, Hill C.

Cell Host Microbe. 2019 Oct 9;26(4):527-541.e5. doi: 10.1016/j.chom.2019.09.009.


Maternal Vertical Transmission Affecting Early-life Microbiota Development.

Wang S, Ryan CA, Boyaval P, Dempsey EM, Ross RP, Stanton C.

Trends Microbiol. 2020 Jan;28(1):28-45. doi: 10.1016/j.tim.2019.07.010. Epub 2019 Sep 3. Review.


Metformin and Dipeptidyl Peptidase-4 Inhibitor Differentially Modulate the Intestinal Microbiota and Plasma Metabolome of Metabolically Dysfunctional Mice.

Ryan PM, Patterson E, Carafa I, Mandal R, Wishart DS, Dinan TG, Cryan JF, Tuohy KM, Stanton C, Ross RP.

Can J Diabetes. 2020 Mar;44(2):146-155.e2. doi: 10.1016/j.jcjd.2019.05.008. Epub 2019 May 27.


Draft Genome Sequence of Bacillus thuringiensis DPC6431, Producer of the Bacteriocin Thuricin CD.

Arbulu S, Murphy K, O'Sullivan O, Rea MC, Hill C, Ross RP.

Microbiol Resour Announc. 2019 Aug 15;8(33). pii: e00398-19. doi: 10.1128/MRA.00398-19.


Non-antibiotic microbial solutions for bovine mastitis - live biotherapeutics, bacteriophage, and phage lysins.

Angelopoulou A, Warda AK, Hill C, Ross RP.

Crit Rev Microbiol. 2019 Sep - Nov;45(5-6):564-580. doi: 10.1080/1040841X.2019.1648381. Epub 2019 Aug 12.


Bifidobacterium and Lactobacillus Composition at Species Level and Gut Microbiota Diversity in Infants before 6 Weeks.

Yang B, Chen Y, Stanton C, Ross RP, Lee YK, Zhao J, Zhang H, Chen W.

Int J Mol Sci. 2019 Jul 5;20(13). pii: E3306. doi: 10.3390/ijms20133306.


Corrigendum to "Effects of therapeutic hypothermia on the gut microbiota and metabolome of infants suffering hypoxic-ischemic encephalopathy at birth" [Int. J. Biochem. Cell Biol. 93 (December) (2017), 110-118].

Watkins C, Murphy K, Yen S, Carafa I, Dempsey EM, O' Shea CA, Allen-Vercoe E, Ross RP, Stanton C, Ryan CA.

Int J Biochem Cell Biol. 2019 Oct;115:105550. doi: 10.1016/j.biocel.2019.05.019. Epub 2019 Jun 26. No abstract available.


Precision Nutrition and the Microbiome Part II: Potential Opportunities and Pathways to Commercialisation.

Mills S, Lane JA, Smith GJ, Grimaldi KA, Ross RP, Stanton C.

Nutrients. 2019 Jun 27;11(7). pii: E1468. doi: 10.3390/nu11071468. Review.


Role of 10-hydroxy-cis-12-octadecenic acid in transforming linoleic acid into conjugated linoleic acid by bifidobacteria.

Gao H, Yang B, Stanton C, Ross RP, Zhang H, Chen H, Chen W.

Appl Microbiol Biotechnol. 2019 Sep;103(17):7151-7160. doi: 10.1007/s00253-019-09886-w. Epub 2019 Jun 27.


Prebiotics from Seaweeds: An Ocean of Opportunity?

Cherry P, Yadav S, Strain CR, Allsopp PJ, McSorley EM, Ross RP, Stanton C.

Mar Drugs. 2019 Jun 1;17(6). pii: E327. doi: 10.3390/md17060327. Review.


Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components.

Lordan C, Thapa D, Ross RP, Cotter PD.

Gut Microbes. 2020;11(1):1-20. doi: 10.1080/19490976.2019.1613124. Epub 2019 May 22.


Paediatrician's perspective of infant gut microbiome research: current status and challenges.

Ryan PM, Stanton C, Ross RP, Kelly AL, Dempsey E, Ryan CA.

Arch Dis Child. 2019 Jul;104(7):701-705. doi: 10.1136/archdischild-2019-316891. Epub 2019 May 21. Review.


Precision Nutrition and the Microbiome, Part I: Current State of the Science.

Mills S, Stanton C, Lane JA, Smith GJ, Ross RP.

Nutrients. 2019 Apr 24;11(4). pii: E923. doi: 10.3390/nu11040923. Review.


Evaluation of Phage Therapy in the Context of Enterococcus faecalis and Its Associated Diseases.

Bolocan AS, Upadrasta A, Bettio PHA, Clooney AG, Draper LA, Ross RP, Hill C.

Viruses. 2019 Apr 20;11(4). pii: E366. doi: 10.3390/v11040366. Review.


Perinatal factors affect the gut microbiota up to four years after birth.

Fouhy F, Watkins C, Hill CJ, O'Shea CA, Nagle B, Dempsey EM, O'Toole PW, Ross RP, Ryan CA, Stanton C.

Nat Commun. 2019 Apr 3;10(1):1517. doi: 10.1038/s41467-019-09252-4.


Advances in Infant Formula Science.

Ahern GJ, Hennessy AA, Ryan CA, Ross RP, Stanton C.

Annu Rev Food Sci Technol. 2019 Mar 25;10:75-102. doi: 10.1146/annurev-food-081318-104308.


Lactobacillus gasseri APC 678 Reduces Shedding of the Pathogen Clostridium difficile in a Murine Model.

Quigley L, Coakley M, Alemayehu D, Rea MC, Casey PG, O'Sullivan Ó, Murphy E, Kiely B, Cotter PD, Hill C, Ross RP.

Front Microbiol. 2019 Feb 20;10:273. doi: 10.3389/fmicb.2019.00273. eCollection 2019.


A ropy exopolysaccharide producing strain Bifidobacterium longum subsp. longum YS108R alleviates DSS-induced colitis by maintenance of the mucosal barrier and gut microbiota modulation.

Yan S, Yang B, Zhao J, Zhao J, Stanton C, Ross RP, Zhang H, Chen W.

Food Funct. 2019 Mar 20;10(3):1595-1608. doi: 10.1039/c9fo00014c.


Lactobacillus mucosae DPC 6426 as a bile-modifying and immunomodulatory microbe.

Ryan PM, Stolte EH, London LEE, Wells JM, Long SL, Joyce SA, Gahan CGM, Fitzgerald GF, Ross RP, Caplice NM, Stanton C.

BMC Microbiol. 2019 Feb 8;19(1):33. doi: 10.1186/s12866-019-1403-0.


Choice of assembly software has a critical impact on virome characterisation.

Sutton TDS, Clooney AG, Ryan FJ, Ross RP, Hill C.

Microbiome. 2019 Jan 28;7(1):12. doi: 10.1186/s40168-019-0626-5.


Retention of Microbiota Diversity by Lactose-Free Milk in a Mouse Model of Elderly Gut Microbiota.

Ntemiri A, Ribière C, Stanton C, Ross RP, O'Connor EM, O'Toole PW.

J Agric Food Chem. 2019 Feb 20;67(7):2098-2112. doi: 10.1021/acs.jafc.8b06414. Epub 2019 Feb 7.


Human skin microbiota is a rich source of bacteriocin-producing staphylococci that kill human pathogens.

O'Sullivan JN, Rea MC, O'Connor PM, Hill C, Ross RP.

FEMS Microbiol Ecol. 2019 Feb 1;95(2). doi: 10.1093/femsec/fiy241.


Protecting bactofencin A to enable its antimicrobial activity using mesoporous matrices.

Durack E, Mallen S, O'Connor PM, Rea MC, Ross RP, Hill C, Hudson S.

Int J Pharm. 2019 Mar 10;558:9-17. doi: 10.1016/j.ijpharm.2018.12.035. Epub 2018 Dec 19.


Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa.

Fitzgerald CB, Shkoporov AN, Sutton TDS, Chaplin AV, Velayudhan V, Ross RP, Hill C.

BMC Genomics. 2018 Dec 14;19(1):931. doi: 10.1186/s12864-018-5313-6.


Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation.

Draper LA, Ryan FJ, Smith MK, Jalanka J, Mattila E, Arkkila PA, Ross RP, Satokari R, Hill C.

Microbiome. 2018 Dec 10;6(1):220. doi: 10.1186/s40168-018-0598-x.


Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut.

Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TDS, Draper LA, Gonzalez-Tortuero E, Ross RP, Hill C.

Cell Host Microbe. 2018 Nov 14;24(5):653-664.e6. doi: 10.1016/j.chom.2018.10.002. Epub 2018 Oct 25.


ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis.

Shkoporov AN, Khokhlova EV, Fitzgerald CB, Stockdale SR, Draper LA, Ross RP, Hill C.

Nat Commun. 2018 Nov 14;9(1):4781. doi: 10.1038/s41467-018-07225-7.


Genus-Wide Assessment of Antibiotic Resistance in Lactobacillus spp.

Campedelli I, Mathur H, Salvetti E, Clarke S, Rea MC, Torriani S, Ross RP, Hill C, O'Toole PW.

Appl Environ Microbiol. 2018 Dec 13;85(1). pii: e01738-18. doi: 10.1128/AEM.01738-18. Print 2019 Jan 1.

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