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Items: 27


Fitness and productivity increase with ecotypic diversity among E. coli coevolved in a simple, constant environment.

Yang DD, Alexander A, Kinnersley M, Cook E, Caudy A, Rosebrock A, Rosenzweig F.

Appl Environ Microbiol. 2020 Feb 14. pii: AEM.00051-20. doi: 10.1128/AEM.00051-20. [Epub ahead of print]


Matrices (re)loaded: Durability, viability, and fermentative capacity of yeast encapsulated in beads of different composition during long-term fed-batch culture.

Gulli J, Yunker P, Rosenzweig F.

Biotechnol Prog. 2020 Jan;36(1):e2925. doi: 10.1002/btpr.2925. Epub 2019 Oct 23.


Diverse conditions support near-zero growth in yeast: Implications for the study of cell lifespan.

Gulli J, Cook E, Kroll E, Rosebrock A, Caudy A, Rosenzweig F.

Microb Cell. 2019 Aug 20;6(9):397-413. doi: 10.15698/mic2019.09.690. Review.


Evidence for Biotic Perchlorate Reduction in Naturally Perchlorate-Rich Sediments of Pilot Valley Basin, Utah.

Lynch KL, Jackson WA, Rey K, Spear JR, Rosenzweig F, Munakata-Marr J.

Astrobiology. 2019 May;19(5):629-641. doi: 10.1089/ast.2018.1864. Epub 2019 Mar 1.


De novo origins of multicellularity in response to predation.

Herron MD, Borin JM, Boswell JC, Walker J, Chen IK, Knox CA, Boyd M, Rosenzweig F, Ratcliff WC.

Sci Rep. 2019 Feb 20;9(1):2328. doi: 10.1038/s41598-019-39558-8.


Genetics of a de novo origin of undifferentiated multicellularity.

Herron MD, Ratcliff WC, Boswell J, Rosenzweig F.

R Soc Open Sci. 2018 Aug 29;5(8):180912. doi: 10.1098/rsos.180912. eCollection 2018 Aug.


Streamlined preparation of genomic DNA in agarose plugs for pulsed-field gel electrophoresis.

Hicks L, van der Graaf CM, Childress J, Cook E, Schmidt K, Rosenzweig F, Kroll E.

J Biol Methods. 2018 Mar 9;5(1):e86. doi: 10.14440/jbm.2018.218. eCollection 2018.


Analysis of motility in multicellular Chlamydomonas reinhardtii evolved under predation.

Boyd M, Rosenzweig F, Herron MD.

PLoS One. 2018 Jan 30;13(1):e0192184. doi: 10.1371/journal.pone.0192184. eCollection 2018.


Rediscovery of the species of 'ancestral Volvox': morphology and phylogenetic position of Pleodorina sphaerica (Volvocales, Chlorophyceae) from Thailand.

Nozaki H, Mahakham W, Athibai S, Yamamoto K, Takusagawa M, Misumi O, Herron MD, Rosenzweig F, Kawachi M.

Phycologia. 2017;56(4):469-475. doi: 10.2216/17-3.1. Epub 2017 Apr 27.


Deciphering the Origin, Evolution, and Physiological Function of the Subtelomeric Aryl-Alcohol Dehydrogenase Gene Family in the Yeast Saccharomyces cerevisiae.

Yang DD, de Billerbeck GM, Zhang JJ, Rosenzweig F, Francois JM.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01553-17. doi: 10.1128/AEM.01553-17. Print 2018 Jan 1.


Stability of Cross-Feeding Polymorphisms in Microbial Communities.

Gudelj I, Kinnersley M, Rashkov P, Schmidt K, Rosenzweig F.

PLoS Comput Biol. 2016 Dec 30;12(12):e1005269. doi: 10.1371/journal.pcbi.1005269. eCollection 2016 Dec.


Experimental evolution: prospects and challenges.

Rosenzweig F, Sherlock G.

Genomics. 2014 Dec;104(6 Pt A):v-vi. doi: 10.1016/j.ygeno.2014.11.008. No abstract available.


The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment.

Chiotti KE, Kvitek DJ, Schmidt KH, Koniges G, Schwartz K, Donckels EA, Rosenzweig F, Sherlock G.

Genomics. 2014 Dec;104(6 Pt A):431-7. doi: 10.1016/j.ygeno.2014.10.011. Epub 2014 Nov 1.


Experimental microbial evolution: history and conceptual underpinnings.

Adams J, Rosenzweig F.

Genomics. 2014 Dec;104(6 Pt A):393-8. doi: 10.1016/j.ygeno.2014.10.004. Epub 2014 Oct 12. Review.


Ex uno plures: clonal reinforcement drives evolution of a simple microbial community.

Kinnersley M, Wenger J, Kroll E, Adams J, Sherlock G, Rosenzweig F.

PLoS Genet. 2014 Jun 26;10(6):e1004430. doi: 10.1371/journal.pgen.1004430. eCollection 2014 Jun.


Uncoupling reproduction from metabolism extends chronological lifespan in yeast.

Nagarajan S, Kruckeberg AL, Schmidt KH, Kroll E, Hamilton M, McInnerney K, Summers R, Taylor T, Rosenzweig F.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):E1538-47. doi: 10.1073/pnas.1323918111. Epub 2014 Mar 31.


A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.

Jordan TC, Burnett SH, Carson S, Caruso SM, Clase K, DeJong RJ, Dennehy JJ, Denver DR, Dunbar D, Elgin SC, Findley AM, Gissendanner CR, Golebiewska UP, Guild N, Hartzog GA, Grillo WH, Hollowell GP, Hughes LE, Johnson A, King RA, Lewis LO, Li W, Rosenzweig F, Rubin MR, Saha MS, Sandoz J, Shaffer CD, Taylor B, Temple L, Vazquez E, Ware VC, Barker LP, Bradley KW, Jacobs-Sera D, Pope WH, Russell DA, Cresawn SG, Lopatto D, Bailey CP, Hatfull GF.

mBio. 2014 Feb 4;5(1):e01051-13. doi: 10.1128/mBio.01051-13.


In situ gene expression profiling of the thermoacidophilic alga Cyanidioschyzon in relation to visible and ultraviolet irradiance.

Skorupa DJ, Castenholz RW, Mazurie A, Carey C, Rosenzweig F, McDermott TR.

Environ Microbiol. 2014 Jun;16(6):1627-41. doi: 10.1111/1462-2920.12317. Epub 2013 Nov 26.


Experimental evolution of an alternating uni- and multicellular life cycle in Chlamydomonas reinhardtii.

Ratcliff WC, Herron MD, Howell K, Pentz JT, Rosenzweig F, Travisano M.

Nat Commun. 2013;4:2742. doi: 10.1038/ncomms3742.


Starvation-associated genome restructuring can lead to reproductive isolation in yeast.

Kroll E, Coyle S, Dunn B, Koniges G, Aragon A, Edwards J, Rosenzweig F.

PLoS One. 2013 Jul 24;8(7):e66414. doi: 10.1371/journal.pone.0066414. Print 2013.


Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression.

Dunn B, Paulish T, Stanbery A, Piotrowski J, Koniges G, Kroll E, Louis EJ, Liti G, Sherlock G, Rosenzweig F.

PLoS Genet. 2013 Mar;9(3):e1003366. doi: 10.1371/journal.pgen.1003366. Epub 2013 Mar 21.


Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve.

Piotrowski JS, Nagarajan S, Kroll E, Stanbery A, Chiotti KE, Kruckeberg AL, Dunn B, Sherlock G, Rosenzweig F.

BMC Evol Biol. 2012 Apr 2;12:46. doi: 10.1186/1471-2148-12-46.


Genotypic and phenotypic variation in Pseudomonas aeruginosa reveals signatures of secondary infection and mutator activity in certain cystic fibrosis patients with chronic lung infections.

Warren AE, Boulianne-Larsen CM, Chandler CB, Chiotti K, Kroll E, Miller SR, Taddei F, Sermet-Gaudelus I, Ferroni A, McInnerney K, Franklin MJ, Rosenzweig F.

Infect Immun. 2011 Dec;79(12):4802-18. doi: 10.1128/IAI.05282-11. Epub 2011 Sep 19.


Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency.

Wenger JW, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F.

PLoS Genet. 2011 Aug;7(8):e1002202. doi: 10.1371/journal.pgen.1002202. Epub 2011 Aug 4.


E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli.

Kinnersley MA, Holben WE, Rosenzweig F.

PLoS Genet. 2009 Nov;5(11):e1000713. doi: 10.1371/journal.pgen.1000713. Epub 2009 Nov 6.


Extraction of RNA from Ca-alginate-encapsulated yeast for transcriptional profiling.

Kruckeberg AL, Nagarajan S, McInnerney K, Rosenzweig F.

Anal Biochem. 2009 Aug 15;391(2):160-2. doi: 10.1016/j.ab.2009.04.032. Epub 2009 May 3.


Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae.

Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig F, Botstein D.

Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):16144-9. Epub 2002 Nov 21.

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