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Items: 1 to 50 of 149

1.

Use of stochastic patch-occupancy models in the California red-legged frog for Bayesian inference regarding past events and future persistence.

Alcala N, Launer AE, Westphal MF, Seymour R, Cole EM, Rosenberg NA.

Conserv Biol. 2018 Jul 17. doi: 10.1111/cobi.13192. [Epub ahead of print]

PMID:
30019427
2.

A genome scan for genes underlying adult body size differences between Central African hunter-gatherers and farmers.

Pemberton TJ, Verdu P, Becker NS, Willer CJ, Hewlett BS, Le Bomin S, Froment A, Rosenberg NA, Heyer E.

Hum Genet. 2018 Jul 14. doi: 10.1007/s00439-018-1902-3. [Epub ahead of print]

PMID:
30008065
3.

Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm.

Kim J, Disanto F, Kopelman NM, Rosenberg NA.

Bull Math Biol. 2018 Jun 6. doi: 10.1007/s11538-018-0444-0. [Epub ahead of print]

PMID:
29876842
4.

The probability of reciprocal monophyly of gene lineages in three and four species.

Mehta RS, Rosenberg NA.

Theor Popul Biol. 2018 May 3. pii: S0040-5809(17)30124-7. doi: 10.1016/j.tpb.2018.04.004. [Epub ahead of print]

PMID:
29729946
5.

Bounding measures of genetic similarity and diversity using majorization.

Aw AJ, Rosenberg NA.

J Math Biol. 2018 Mar 22. doi: 10.1007/s00285-018-1226-x. [Epub ahead of print]

PMID:
29569105
6.

The 2018 Marcus W. Feldman Prize in Theoretical Population Biology.

Rosenberg NA.

Theor Popul Biol. 2018 Feb;119:1-2. doi: 10.1016/j.tpb.2017.11.004. Epub 2017 Nov 24. No abstract available.

PMID:
29180240
7.

On the joint distribution of tree height and tree length under the coalescent.

Arbisser IM, Jewett EM, Rosenberg NA.

Theor Popul Biol. 2018 Jul;122:46-56. doi: 10.1016/j.tpb.2017.10.008. Epub 2017 Nov 10.

PMID:
29132923
8.

On the Number of Non-equivalent Ancestral Configurations for Matching Gene Trees and Species Trees.

Disanto F, Rosenberg NA.

Bull Math Biol. 2017 Sep 14. doi: 10.1007/s11538-017-0342-x. [Epub ahead of print]

PMID:
28913585
9.

Consanguinity Rates Predict Long Runs of Homozygosity in Jewish Populations.

Kang JTL, Goldberg A, Edge MD, Behar DM, Rosenberg NA.

Hum Hered. 2016;82(3-4):87-102. doi: 10.1159/000478897. Epub 2017 Sep 15.

PMID:
28910803
10.

Parallel Trajectories of Genetic and Linguistic Admixture in a Genetically Admixed Creole Population.

Verdu P, Jewett EM, Pemberton TJ, Rosenberg NA, Baptista M.

Curr Biol. 2017 Aug 21;27(16):2529-2535.e3. doi: 10.1016/j.cub.2017.07.002. Epub 2017 Aug 10.

PMID:
28803872
11.

Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing.

Kamneva OK, Syring J, Liston A, Rosenberg NA.

BMC Evol Biol. 2017 Aug 4;17(1):180. doi: 10.1186/s12862-017-1019-7.

12.

Linkage disequilibrium matches forensic genetic records to disjoint genomic marker sets.

Edge MD, Algee-Hewitt BFB, Pemberton TJ, Li JZ, Rosenberg NA.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5671-5676. doi: 10.1073/pnas.1619944114. Epub 2017 May 15.

13.

Mathematical Constraints on FST: Biallelic Markers in Arbitrarily Many Populations.

Alcala N, Rosenberg NA.

Genetics. 2017 Jul;206(3):1581-1600. doi: 10.1534/genetics.116.199141. Epub 2017 May 5.

14.

Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe.

Goldberg A, Günther T, Rosenberg NA, Jakobsson M.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3875-E3877. doi: 10.1073/pnas.1704442114. Epub 2017 May 5. No abstract available.

15.

Simulation-Based Evaluation of Hybridization Network Reconstruction Methods in the Presence of Incomplete Lineage Sorting.

Kamneva OK, Rosenberg NA.

Evol Bioinform Online. 2017 Mar 10;13:1176934317691935. doi: 10.1177/1176934317691935. eCollection 2017.

16.

Enumeration of Ancestral Configurations for Matching Gene Trees and Species Trees.

Disanto F, Rosenberg NA.

J Comput Biol. 2017 Sep;24(9):831-850. doi: 10.1089/cmb.2016.0159. Epub 2017 Apr 24.

PMID:
28437136
17.

Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations.

Goldberg A, Günther T, Rosenberg NA, Jakobsson M.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2657-2662. doi: 10.1073/pnas.1616392114. Epub 2017 Feb 21.

18.

An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees.

Uricchio LH, Warnow T, Rosenberg NA.

BMC Bioinformatics. 2016 Nov 11;17(Suppl 14):417. doi: 10.1186/s12859-016-1266-4.

19.

Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V.

PLoS Genet. 2016 Nov 30;12(11):e1006472. doi: 10.1371/journal.pgen.1006472. eCollection 2016 Nov.

21.

The probability of monophyly of a sample of gene lineages on a species tree.

Mehta RS, Bryant D, Rosenberg NA.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8002-9. doi: 10.1073/pnas.1601074113. Epub 2016 Jul 18.

22.

Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.

DeGiorgio M, Rosenberg NA.

Theor Popul Biol. 2016 Aug;110:12-24. doi: 10.1016/j.tpb.2016.02.002. Epub 2016 Apr 13.

23.

Individual Identifiability Predicts Population Identifiability in Forensic Microsatellite Markers.

Algee-Hewitt BF, Edge MD, Kim J, Li JZ, Rosenberg NA.

Curr Biol. 2016 Apr 4;26(7):935-42. doi: 10.1016/j.cub.2016.01.065. Epub 2016 Mar 17.

24.

Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?

Stadler T, Degnan JH, Rosenberg NA.

Syst Biol. 2016 Jul;65(4):628-39. doi: 10.1093/sysbio/syw019. Epub 2016 Mar 11.

25.

Admixture Models and the Breeding Systems of H. S. Jennings: A GENETICS Connection.

Rosenberg NA.

Genetics. 2016 Jan;202(1):9-13. doi: 10.1534/genetics.115.181057. No abstract available.

26.

Asymptotic Properties of the Number of Matching Coalescent Histories for Caterpillar-Like Families of Species Trees.

Disanto F, Rosenberg NA.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Sep-Oct;13(5):913-925. Epub 2015 Oct 5.

27.

Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V.

PLoS Genet. 2015 Sep 24;11(9):e1005527. doi: 10.1371/journal.pgen.1005527. eCollection 2015 Sep. Erratum in: PLoS Genet. 2016 Nov 30;12 (11):e1006472.

28.

On the Number of Ranked Species Trees Producing Anomalous Ranked Gene Trees.

Disanto F, Rosenberg NA.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Nov-Dec;11(6):1229-38. doi: 10.1109/TCBB.2014.2343977.

PMID:
26357058
29.

Genetic Diversity and Societally Important Disparities.

Rosenberg NA, Kang JT.

Genetics. 2015 Sep;201(1):1-12. doi: 10.1534/genetics.115.176750. Review.

30.

Choosing Subsamples for Sequencing Studies by Minimizing the Average Distance to the Closest Leaf.

Kang JT, Zhang P, Zöllner S, Rosenberg NA.

Genetics. 2015 Oct;201(2):499-511. doi: 10.1534/genetics.115.176909. Epub 2015 Aug 24.

31.

Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome.

Goldberg A, Rosenberg NA.

Genetics. 2015 Sep;201(1):263-79. doi: 10.1534/genetics.115.178509. Epub 2015 Jul 24.

32.

Hamilton's rule: Game theory meets coalescent theory.

Lehmann L, Rosenberg NA.

Theor Popul Biol. 2015 Aug;103:1. doi: 10.1016/j.tpb.2015.05.001. Epub 2015 May 14. No abstract available.

PMID:
25980950
33.

Coalescent Histories for Lodgepole Species Trees.

Disanto F, Rosenberg NA.

J Comput Biol. 2015 Oct;22(10):918-29. doi: 10.1089/cmb.2015.0015. Epub 2015 May 14.

PMID:
25973633
34.

Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps.

Garud NR, Rosenberg NA.

Theor Popul Biol. 2015 Jun;102:94-101. doi: 10.1016/j.tpb.2015.04.001. Epub 2015 Apr 16.

35.

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I.

Mol Ecol Resour. 2015 Sep;15(5):1179-91. doi: 10.1111/1755-0998.12387. Epub 2015 Feb 27.

36.

Implications of the apportionment of human genetic diversity for the apportionment of human phenotypic diversity.

Edge MD, Rosenberg NA.

Stud Hist Philos Biol Biomed Sci. 2015 Aug;52:32-45. doi: 10.1016/j.shpsc.2014.12.005. Epub 2015 Feb 9.

37.

Theory in population biology, or biologically inspired mathematics?

Rosenberg NA.

Theor Popul Biol. 2015 Jun;102:1-2. doi: 10.1016/j.tpb.2015.01.002. Epub 2015 Jan 24. No abstract available.

PMID:
25625316
38.

A comparison of worldwide phonemic and genetic variation in human populations.

Creanza N, Ruhlen M, Pemberton TJ, Rosenberg NA, Feldman MW, Ramachandran S.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1265-72. doi: 10.1073/pnas.1424033112. Epub 2015 Jan 20.

39.

AABC: approximate approximate Bayesian computation for inference in population-genetic models.

Buzbas EO, Rosenberg NA.

Theor Popul Biol. 2015 Feb;99:31-42. doi: 10.1016/j.tpb.2014.09.002. Epub 2014 Sep 26.

40.

Autosomal admixture levels are informative about sex bias in admixed populations.

Goldberg A, Verdu P, Rosenberg NA.

Genetics. 2014 Nov;198(3):1209-29. doi: 10.1534/genetics.114.166793. Epub 2014 Sep 5.

41.

Upper bounds on FST in terms of the frequency of the most frequent allele and total homozygosity: the case of a specified number of alleles.

Edge MD, Rosenberg NA.

Theor Popul Biol. 2014 Nov;97:20-34. doi: 10.1016/j.tpb.2014.08.001. Epub 2014 Aug 14.

42.

Patterns of admixture and population structure in native populations of Northwest North America.

Verdu P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski JS, Rosenberg NA, Malhi RS.

PLoS Genet. 2014 Aug 14;10(8):e1004530. doi: 10.1371/journal.pgen.1004530. eCollection 2014 Aug.

43.

No evidence from genome-wide data of a Khazar origin for the Ashkenazi Jews.

Behar DM, Metspalu M, Baran Y, Kopelman NM, Yunusbayev B, Gladstein A, Tzur S, Sahakyan H, Bahmanimehr A, Yepiskoposyan L, Tambets K, Khusnutdinova EK, Kushniarevich A, Balanovsky O, Balanovsky E, Kovacevic L, Marjanovic D, Mihailov E, Kouvatsi A, Triantaphyllidis C, King RJ, Semino O, Torroni A, Hammer MF, Metspalu E, Skorecki K, Rosset S, Halperin E, Villems R, Rosenberg NA.

Hum Biol. 2013 Dec;85(6):859-900.

PMID:
25079123
44.

Genetics and the history of the Samaritans: Y-chromosomal microsatellites and genetic affinity between Samaritans and Cohanim.

Oefner PJ, Hölzi G, Shen P, Shpirer I, Gefel D, Lavi T, Woolf E, Cohen J, Cinnioglu C, Underhill PA, Rosenberg NA, Hochrein J, Granka JM, Hillel J, Feldman MW.

Hum Biol. 2013 Dec;85(6):825-58.

PMID:
25079122
45.

From generation to generation: the genetics of Jewish populations. Introduction.

Rosenberg NA, Weitzman SP.

Hum Biol. 2013 Dec;85(6):817-24. No abstract available.

PMID:
25079121
46.

Population-genetic influences on genomic estimates of the inbreeding coefficient: a global perspective.

Pemberton TJ, Rosenberg NA.

Hum Hered. 2014;77(1-4):37-48. doi: 10.1159/000362878. Epub 2014 Jul 29.

47.

An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.

DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA.

BMC Evol Biol. 2014 Mar 29;14:67. doi: 10.1186/1471-2148-14-67.

48.

Coalescent histories for caterpillar-like families.

Rosenberg NA.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1253-62.

PMID:
24524157
49.

Windfalls and pitfalls: Applications of population genetics to the search for disease genes.

Edge MD, Gorroochurn P, Rosenberg NA.

Evol Med Public Health. 2013 Jan;2013(1):254-72. doi: 10.1093/emph/eot021. Epub 2013 Nov 6.

50.

Theory and applications of a deterministic approximation to the coalescent model.

Jewett EM, Rosenberg NA.

Theor Popul Biol. 2014 May;93:14-29. doi: 10.1016/j.tpb.2013.12.007. Epub 2014 Jan 7.

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