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Items: 1 to 50 of 160

1.

The Relationship Between Haplotype-Based F ST and Haplotype Length.

Mehta RS, Feder AF, Boca SM, Rosenberg NA.

Genetics. 2019 Sep;213(1):281-295. doi: 10.1534/genetics.119.302430. Epub 2019 Jul 8.

PMID:
31285255
2.

Coalescent Theory of Migration Network Motifs.

Alcala N, Goldberg A, Ramakrishnan U, Rosenberg NA.

Mol Biol Evol. 2019 Oct 1;36(10):2358-2374. doi: 10.1093/molbev/msz136.

3.

FST and the triangle inequality for biallelic markers.

Arbisser IM, Rosenberg NA.

Theor Popul Biol. 2019 May 24. pii: S0040-5809(18)30204-1. doi: 10.1016/j.tpb.2019.05.003. [Epub ahead of print]

PMID:
31132375
4.

ENUMERATION OF LONELY PAIRS OF GENE TREES AND SPECIES TREES BY MEANS OF ANTIPODAL CHERRIES.

Rosenberg NA.

Adv Appl Math. 2019 Jan;102:1-17. doi: 10.1016/j.aam.2018.09.001. Epub 2018 Sep 14.

PMID:
30983650
5.

Analysis of author gender in TPB, 1991-2018.

Severson AL, Uricchio LH, Arbisser IM, Glassberg EC, Rosenberg NA.

Theor Popul Biol. 2019 Jun;127:1-6. doi: 10.1016/j.tpb.2019.04.001. Epub 2019 Apr 4. No abstract available.

PMID:
30954632
6.

The Effect of Consanguinity on Between-Individual Identity-by-Descent Sharing.

Severson AL, Carmi S, Rosenberg NA.

Genetics. 2019 May;212(1):305-316. doi: 10.1534/genetics.119.302136. Epub 2019 Mar 29.

7.

Interpreting polygenic scores, polygenic adaptation, and human phenotypic differences.

Rosenberg NA, Edge MD, Pritchard JK, Feldman MW.

Evol Med Public Health. 2018 Dec 27;2019(1):26-34. doi: 10.1093/emph/eoy036. eCollection 2019. Review.

8.

Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers.

Altenberg L, Creanza N, Fogarty L, Hadany L, Kolodny O, Laland KN, Lehmann L, Otto SP, Rosenberg NA, Van Cleve J, Wakeley J.

Theor Popul Biol. 2019 Oct;129:4-8. doi: 10.1016/j.tpb.2018.10.003. Epub 2018 Dec 26.

PMID:
30593784
9.

G ST ' , Jost's D, and FST are similarly constrained by allele frequencies: A mathematical, simulation, and empirical study.

Alcala N, Rosenberg NA.

Mol Ecol. 2019 Apr;28(7):1624-1636. doi: 10.1111/mec.15000.

PMID:
30589985
10.

Statistical Detection of Relatives Typed with Disjoint Forensic and Biomedical Loci.

Kim J, Edge MD, Algee-Hewitt BFB, Li JZ, Rosenberg NA.

Cell. 2018 Oct 18;175(3):848-858.e6. doi: 10.1016/j.cell.2018.09.008. Epub 2018 Oct 11.

PMID:
30318150
11.

Enumeration of compact coalescent histories for matching gene trees and species trees.

Disanto F, Rosenberg NA.

J Math Biol. 2019 Jan;78(1-2):155-188. doi: 10.1007/s00285-018-1271-5. Epub 2018 Aug 16.

PMID:
30116881
12.

Use of stochastic patch occupancy models in the California red-legged frog for Bayesian inference regarding past events and future persistence.

Alcala N, Launer AE, Westphal MF, Seymour R, Cole EM, Rosenberg NA.

Conserv Biol. 2019 Jun;33(3):685-696. doi: 10.1111/cobi.13192. Epub 2019 Apr 15.

PMID:
30019427
13.

A genome scan for genes underlying adult body size differences between Central African hunter-gatherers and farmers.

Pemberton TJ, Verdu P, Becker NS, Willer CJ, Hewlett BS, Le Bomin S, Froment A, Rosenberg NA, Heyer E.

Hum Genet. 2018 Jul;137(6-7):487-509. doi: 10.1007/s00439-018-1902-3. Epub 2018 Jul 14.

PMID:
30008065
14.

Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm.

Kim J, Disanto F, Kopelman NM, Rosenberg NA.

Bull Math Biol. 2019 Feb;81(2):452-493. doi: 10.1007/s11538-018-0444-0. Epub 2018 Jun 6.

PMID:
29876842
15.

The probability of reciprocal monophyly of gene lineages in three and four species.

Mehta RS, Rosenberg NA.

Theor Popul Biol. 2019 Oct;129:133-147. doi: 10.1016/j.tpb.2018.04.004. Epub 2018 May 3.

PMID:
29729946
16.

Bounding measures of genetic similarity and diversity using majorization.

Aw AJ, Rosenberg NA.

J Math Biol. 2018 Sep;77(3):711-737. doi: 10.1007/s00285-018-1226-x. Epub 2018 Mar 22.

17.

The 2018 Marcus W. Feldman Prize in Theoretical Population Biology.

Rosenberg NA.

Theor Popul Biol. 2018 Feb;119:1-2. doi: 10.1016/j.tpb.2017.11.004. Epub 2017 Nov 24. No abstract available.

PMID:
29180240
18.

On the joint distribution of tree height and tree length under the coalescent.

Arbisser IM, Jewett EM, Rosenberg NA.

Theor Popul Biol. 2018 Jul;122:46-56. doi: 10.1016/j.tpb.2017.10.008. Epub 2017 Nov 10.

19.

On the Number of Non-equivalent Ancestral Configurations for Matching Gene Trees and Species Trees.

Disanto F, Rosenberg NA.

Bull Math Biol. 2019 Feb;81(2):384-407. doi: 10.1007/s11538-017-0342-x. Epub 2017 Sep 14.

PMID:
28913585
20.

Consanguinity Rates Predict Long Runs of Homozygosity in Jewish Populations.

Kang JTL, Goldberg A, Edge MD, Behar DM, Rosenberg NA.

Hum Hered. 2016;82(3-4):87-102. doi: 10.1159/000478897. Epub 2017 Sep 15.

21.

Parallel Trajectories of Genetic and Linguistic Admixture in a Genetically Admixed Creole Population.

Verdu P, Jewett EM, Pemberton TJ, Rosenberg NA, Baptista M.

Curr Biol. 2017 Aug 21;27(16):2529-2535.e3. doi: 10.1016/j.cub.2017.07.002. Epub 2017 Aug 10.

22.

Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing.

Kamneva OK, Syring J, Liston A, Rosenberg NA.

BMC Evol Biol. 2017 Aug 4;17(1):180. doi: 10.1186/s12862-017-1019-7.

23.

Linkage disequilibrium matches forensic genetic records to disjoint genomic marker sets.

Edge MD, Algee-Hewitt BFB, Pemberton TJ, Li JZ, Rosenberg NA.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5671-5676. doi: 10.1073/pnas.1619944114. Epub 2017 May 15.

24.

Mathematical Constraints on FST: Biallelic Markers in Arbitrarily Many Populations.

Alcala N, Rosenberg NA.

Genetics. 2017 Jul;206(3):1581-1600. doi: 10.1534/genetics.116.199141. Epub 2017 May 5.

25.

Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe.

Goldberg A, Günther T, Rosenberg NA, Jakobsson M.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3875-E3877. doi: 10.1073/pnas.1704442114. Epub 2017 May 5. No abstract available.

26.

Simulation-Based Evaluation of Hybridization Network Reconstruction Methods in the Presence of Incomplete Lineage Sorting.

Kamneva OK, Rosenberg NA.

Evol Bioinform Online. 2017 Mar 10;13:1176934317691935. doi: 10.1177/1176934317691935. eCollection 2017.

27.

Enumeration of Ancestral Configurations for Matching Gene Trees and Species Trees.

Disanto F, Rosenberg NA.

J Comput Biol. 2017 Sep;24(9):831-850. doi: 10.1089/cmb.2016.0159. Epub 2017 Apr 24.

28.

Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations.

Goldberg A, Günther T, Rosenberg NA, Jakobsson M.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2657-2662. doi: 10.1073/pnas.1616392114. Epub 2017 Feb 21.

29.

An analytical upper bound on the number of loci required for all splits of a species tree to appear in a set of gene trees.

Uricchio LH, Warnow T, Rosenberg NA.

BMC Bioinformatics. 2016 Nov 11;17(Suppl 14):417. doi: 10.1186/s12859-016-1266-4.

30.

Correction: Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V.

PLoS Genet. 2016 Nov 30;12(11):e1006472. doi: 10.1371/journal.pgen.1006472. eCollection 2016 Nov.

32.

The probability of monophyly of a sample of gene lineages on a species tree.

Mehta RS, Bryant D, Rosenberg NA.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8002-9. doi: 10.1073/pnas.1601074113. Epub 2016 Jul 18.

33.

Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure.

DeGiorgio M, Rosenberg NA.

Theor Popul Biol. 2016 Aug;110:12-24. doi: 10.1016/j.tpb.2016.02.002. Epub 2016 Apr 13.

34.

Individual Identifiability Predicts Population Identifiability in Forensic Microsatellite Markers.

Algee-Hewitt BF, Edge MD, Kim J, Li JZ, Rosenberg NA.

Curr Biol. 2016 Apr 4;26(7):935-42. doi: 10.1016/j.cub.2016.01.065. Epub 2016 Mar 17.

35.

Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?

Stadler T, Degnan JH, Rosenberg NA.

Syst Biol. 2016 Jul;65(4):628-39. doi: 10.1093/sysbio/syw019. Epub 2016 Mar 11.

36.

Admixture Models and the Breeding Systems of H. S. Jennings: A GENETICS Connection.

Rosenberg NA.

Genetics. 2016 Jan;202(1):9-13. doi: 10.1534/genetics.115.181057. No abstract available.

37.

Asymptotic Properties of the Number of Matching Coalescent Histories for Caterpillar-Like Families of Species Trees.

Disanto F, Rosenberg NA.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Sep-Oct;13(5):913-925. Epub 2015 Oct 5.

38.

Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele.

Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V.

PLoS Genet. 2015 Sep 24;11(9):e1005527. doi: 10.1371/journal.pgen.1005527. eCollection 2015 Sep. Erratum in: PLoS Genet. 2016 Nov 30;12 (11):e1006472.

39.

On the Number of Ranked Species Trees Producing Anomalous Ranked Gene Trees.

Disanto F, Rosenberg NA.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Nov-Dec;11(6):1229-38. doi: 10.1109/TCBB.2014.2343977.

PMID:
26357058
40.

Genetic Diversity and Societally Important Disparities.

Rosenberg NA, Kang JT.

Genetics. 2015 Sep;201(1):1-12. doi: 10.1534/genetics.115.176750. Review.

41.

Choosing Subsamples for Sequencing Studies by Minimizing the Average Distance to the Closest Leaf.

Kang JT, Zhang P, Zöllner S, Rosenberg NA.

Genetics. 2015 Oct;201(2):499-511. doi: 10.1534/genetics.115.176909. Epub 2015 Aug 24.

42.

Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome.

Goldberg A, Rosenberg NA.

Genetics. 2015 Sep;201(1):263-79. doi: 10.1534/genetics.115.178509. Epub 2015 Jul 24.

43.

Hamilton's rule: Game theory meets coalescent theory.

Lehmann L, Rosenberg NA.

Theor Popul Biol. 2015 Aug;103:1. doi: 10.1016/j.tpb.2015.05.001. Epub 2015 May 14. No abstract available.

PMID:
25980950
44.

Coalescent Histories for Lodgepole Species Trees.

Disanto F, Rosenberg NA.

J Comput Biol. 2015 Oct;22(10):918-29. doi: 10.1089/cmb.2015.0015. Epub 2015 May 14.

PMID:
25973633
45.

Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps.

Garud NR, Rosenberg NA.

Theor Popul Biol. 2015 Jun;102:94-101. doi: 10.1016/j.tpb.2015.04.001. Epub 2015 Apr 16.

46.

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I.

Mol Ecol Resour. 2015 Sep;15(5):1179-91. doi: 10.1111/1755-0998.12387. Epub 2015 Feb 27.

47.

Implications of the apportionment of human genetic diversity for the apportionment of human phenotypic diversity.

Edge MD, Rosenberg NA.

Stud Hist Philos Biol Biomed Sci. 2015 Aug;52:32-45. doi: 10.1016/j.shpsc.2014.12.005. Epub 2015 Feb 9.

48.

Theory in population biology, or biologically inspired mathematics?

Rosenberg NA.

Theor Popul Biol. 2015 Jun;102:1-2. doi: 10.1016/j.tpb.2015.01.002. Epub 2015 Jan 24. No abstract available.

PMID:
25625316
49.

A comparison of worldwide phonemic and genetic variation in human populations.

Creanza N, Ruhlen M, Pemberton TJ, Rosenberg NA, Feldman MW, Ramachandran S.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1265-72. doi: 10.1073/pnas.1424033112. Epub 2015 Jan 20.

50.

AABC: approximate approximate Bayesian computation for inference in population-genetic models.

Buzbas EO, Rosenberg NA.

Theor Popul Biol. 2015 Feb;99:31-42. doi: 10.1016/j.tpb.2014.09.002. Epub 2014 Sep 26.

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