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Items: 1 to 50 of 128

1.

Molecular Graphics: Bridging Structural Biologists and Computer Scientists.

Martinez X, Krone M, Alharbi N, Rose AS, Laramee RS, O'Donoghue S, Baaden M, Chavent M.

Structure. 2019 Nov 5;27(11):1617-1623. doi: 10.1016/j.str.2019.09.001. Epub 2019 Sep 26. Review.

PMID:
31564470
2.

Bringing Molecular Dynamics Simulation Data into View.

Hildebrand PW, Rose AS, Tiemann JKS.

Trends Biochem Sci. 2019 Nov;44(11):902-913. doi: 10.1016/j.tibs.2019.06.004. Epub 2019 Jul 10. Review.

3.

Development of augmented-reality applications in otolaryngology-head and neck surgery.

Rose AS, Kim H, Fuchs H, Frahm JM.

Laryngoscope. 2019 Oct;129 Suppl 3:S1-S11. doi: 10.1002/lary.28098. Epub 2019 Jul 1.

PMID:
31260127
4.

Outpatient management and surgeon specialty for thyroglossal duct cyst excision: A retrospective analysis of 377 patients and 30-day outcomes in the American College of Surgeons NSQIP-P Database.

Farquhar DR, Rawal RB, Masood MM, McClain WG, Kilpatrick LA, Rose AS, Zdanski CJ.

Clin Otolaryngol. 2018 Oct;43(5):1402-1406. doi: 10.1111/coa.13170. Epub 2018 Jul 2. No abstract available.

PMID:
29900688
5.

NGL viewer: web-based molecular graphics for large complexes.

Rose AS, Bradley AR, Valasatava Y, Duarte JM, Prlic A, Rose PW.

Bioinformatics. 2018 Nov 1;34(21):3755-3758. doi: 10.1093/bioinformatics/bty419.

6.

FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps.

Tiemann JK, Rose AS, Ismer J, Darvish MD, Hilal T, Spahn CM, Hildebrand PW.

Nucleic Acids Res. 2018 Jul 2;46(W1):W310-W314. doi: 10.1093/nar/gky424.

7.

The arrestin-1 finger loop interacts with two distinct conformations of active rhodopsin.

Elgeti M, Kazmin R, Rose AS, Szczepek M, Hildebrand PW, Bartl FJ, Scheerer P, Hofmann KP.

J Biol Chem. 2018 Mar 23;293(12):4403-4410. doi: 10.1074/jbc.M117.817890. Epub 2018 Jan 23.

8.

Intravenous delivery of oncolytic reovirus to brain tumor patients immunologically primes for subsequent checkpoint blockade.

Samson A, Scott KJ, Taggart D, West EJ, Wilson E, Nuovo GJ, Thomson S, Corns R, Mathew RK, Fuller MJ, Kottke TJ, Thompson JM, Ilett EJ, Cockle JV, van Hille P, Sivakumar G, Polson ES, Turnbull SJ, Appleton ES, Migneco G, Rose AS, Coffey MC, Beirne DA, Collinson FJ, Ralph C, Alan Anthoney D, Twelves CJ, Furness AJ, Quezada SA, Wurdak H, Errington-Mais F, Pandha H, Harrington KJ, Selby PJ, Vile RG, Griffin SD, Stead LF, Short SC, Melcher AA.

Sci Transl Med. 2018 Jan 3;10(422). pii: eaam7577. doi: 10.1126/scitranslmed.aam7577.

9.

NGLview-interactive molecular graphics for Jupyter notebooks.

Nguyen H, Case DA, Rose AS.

Bioinformatics. 2018 Apr 1;34(7):1241-1242. doi: 10.1093/bioinformatics/btx789.

10.

MDsrv: viewing and sharing molecular dynamics simulations on the web.

Tiemann JKS, Guixà-González R, Hildebrand PW, Rose AS.

Nat Methods. 2017 Nov 30;14(12):1123-1124. doi: 10.1038/nmeth.4497. No abstract available.

PMID:
29190271
11.

A fragment based method for modeling of protein segments into cryo-EM density maps.

Ismer J, Rose AS, Tiemann JKS, Hildebrand PW.

BMC Bioinformatics. 2017 Nov 13;18(1):475. doi: 10.1186/s12859-017-1904-5.

12.

DeepSite: protein-binding site predictor using 3D-convolutional neural networks.

Jiménez J, Doerr S, Martínez-Rosell G, Rose AS, De Fabritiis G.

Bioinformatics. 2017 Oct 1;33(19):3036-3042. doi: 10.1093/bioinformatics/btx350.

PMID:
28575181
13.

MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.

Bradley AR, Rose AS, Pavelka A, Valasatava Y, Duarte JM, Prlić A, Rose PW.

PLoS Comput Biol. 2017 Jun 2;13(6):e1005575. doi: 10.1371/journal.pcbi.1005575. eCollection 2017 Jun.

14.

Towards an efficient compression of 3D coordinates of macromolecular structures.

Valasatava Y, Bradley AR, Rose AS, Duarte JM, Prlić A, Rose PW.

PLoS One. 2017 Mar 31;12(3):e0174846. doi: 10.1371/journal.pone.0174846. eCollection 2017.

15.

Laryngeal Mass in an Infant.

Scott WC, Vanleer JA, Rose AS.

JAMA Otolaryngol Head Neck Surg. 2016 Dec 1;142(12):1239-1240. doi: 10.1001/jamaoto.2016.2967. No abstract available.

PMID:
27892995
16.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information.

Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.

Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27.

17.

Transoral robotic surgery for upper airway pathology in the pediatric population.

Zdanski CJ, Austin GK, Walsh JM, Drake AF, Rose AS, Hackman TG, Zanation AM.

Laryngoscope. 2017 Jan;127(1):247-251. doi: 10.1002/lary.26101. Epub 2016 Jun 19.

PMID:
27320495
18.

SL2: an interactive webtool for modeling of missing segments in proteins.

Ismer J, Rose AS, Tiemann JK, Goede A, Preissner R, Hildebrand PW.

Nucleic Acids Res. 2016 Jul 8;44(W1):W390-4. doi: 10.1093/nar/gkw297. Epub 2016 Apr 21.

19.

Expansile Maxillary Sinus Mass in a Young Child.

Masood MM, Singer B, Rose AS.

JAMA Otolaryngol Head Neck Surg. 2016 Aug 1;142(8):793-4. doi: 10.1001/jamaoto.2015.3789. No abstract available.

PMID:
27031278
20.

Role of Structural Dynamics at the Receptor G Protein Interface for Signal Transduction.

Rose AS, Zachariae U, Grubmüller H, Hofmann KP, Scheerer P, Hildebrand PW.

PLoS One. 2015 Nov 25;10(11):e0143399. doi: 10.1371/journal.pone.0143399. eCollection 2015.

21.

NGL Viewer: a web application for molecular visualization.

Rose AS, Hildebrand PW.

Nucleic Acids Res. 2015 Jul 1;43(W1):W576-9. doi: 10.1093/nar/gkv402. Epub 2015 Apr 29.

22.

Pre-operative simulation of pediatric mastoid surgery with 3D-printed temporal bone models.

Rose AS, Webster CE, Harrysson OL, Formeister EJ, Rawal RB, Iseli CE.

Int J Pediatr Otorhinolaryngol. 2015 May;79(5):740-4. doi: 10.1016/j.ijporl.2015.03.004. Epub 2015 Mar 10.

PMID:
25794654
23.

Multi-material 3D Models for Temporal Bone Surgical Simulation.

Rose AS, Kimbell JS, Webster CE, Harrysson OL, Formeister EJ, Buchman CA.

Ann Otol Rhinol Laryngol. 2015 Jul;124(7):528-36. doi: 10.1177/0003489415570937. Epub 2015 Feb 6.

PMID:
25662026
24.

Comprehensive quality of life outcomes for pediatric patients undergoing endoscopic sinus surgery.

Taylor RJ, Miller JD, Rose AS, Drake AF, Zdanski CJ, Senior BA, Ebert CS Jr, Zanation AM.

Rhinology. 2014 Dec;52(4):327-33. doi: 10.4193/Rhin14.028.

PMID:
25479210
25.

Position of transmembrane helix 6 determines receptor G protein coupling specificity.

Rose AS, Elgeti M, Zachariae U, Grubmüller H, Hofmann KP, Scheerer P, Hildebrand PW.

J Am Chem Soc. 2014 Aug 13;136(32):11244-7. doi: 10.1021/ja5055109. Epub 2014 Jul 31.

PMID:
25046433
26.

Surgical management of chronic sialorrhea in pediatric patients: 10-year experience from one tertiary care institution.

Formeister EJ, Dahl JP, Rose AS.

Int J Pediatr Otorhinolaryngol. 2014 Aug;78(8):1387-92. doi: 10.1016/j.ijporl.2014.06.005. Epub 2014 Jun 16.

PMID:
24974144
27.

Expression of protease-activated receptors in allergic fungal rhinosinusitis.

Ebert CS Jr, McKinney KA, Urrutia G, Wu M, Rose AS, Fleischman GM, Thorp B, Senior BA, Zanation AM.

Int Forum Allergy Rhinol. 2014 Apr;4(4):266-71. doi: 10.1002/alr.21295. Epub 2014 Feb 5.

PMID:
24500840
28.

Chronic rhinosinusitis in children.

Rose AS, Thorp BD, Zanation AM, Ebert CS Jr.

Pediatr Clin North Am. 2013 Aug;60(4):979-91. doi: 10.1016/j.pcl.2013.04.001. Epub 2013 May 13. Review.

PMID:
23905832
29.

Precision vs flexibility in GPCR signaling.

Elgeti M, Rose AS, Bartl FJ, Hildebrand PW, Hofmann KP, Heck M.

J Am Chem Soc. 2013 Aug 21;135(33):12305-12. doi: 10.1021/ja405133k. Epub 2013 Aug 9.

PMID:
23883288
30.

Voronoia4RNA--a database of atomic packing densities of RNA structures and their complexes.

Ismer J, Rose AS, Tiemann JK, Goede A, Rother K, Hildebrand PW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D280-4. doi: 10.1093/nar/gks1061. Epub 2012 Nov 17.

31.

Treating common disorders in complex children.

Rose AS.

Otolaryngol Clin North Am. 2012 Jun;45(3):xi-xii. doi: 10.1016/j.otc.2012.03.011. No abstract available.

PMID:
22588046
32.

Endoscopic skull base techniques for juvenile nasopharyngeal angiofibroma.

Zanation AM, Mitchell CA, Rose AS.

Otolaryngol Clin North Am. 2012 Jun;45(3):711-30, ix. doi: 10.1016/j.otc.2012.03.008. Review.

PMID:
22588045
33.

A review of the evaluation and management of velopharyngeal insufficiency in children.

Ruda JM, Krakovitz P, Rose AS.

Otolaryngol Clin North Am. 2012 Jun;45(3):653-69, viii. doi: 10.1016/j.otc.2012.03.005. Review.

PMID:
22588042
34.

Allergic fungal sinusitis in children.

Thorp BD, McKinney KA, Rose AS, Ebert CS Jr.

Otolaryngol Clin North Am. 2012 Jun;45(3):631-42, viii. doi: 10.1016/j.otc.2012.03.003. Review.

PMID:
22588040
35.

Growth, structural, spectral, mechanical, thermal and dielectric characterization of phosphoric acid admixtured L-alanine (PLA) single crystals.

Rose AS, Selvarajan P, Perumal S.

Spectrochim Acta A Mol Biomol Spectrosc. 2011 Oct 15;81(1):270-5. doi: 10.1016/j.saa.2011.06.009. Epub 2011 Jun 28.

PMID:
21775196
36.

Transpalatal greater palatine canal injection: Radioanatomic analysis of where to bend the needle for pediatric sinus surgery.

McKinney KA, Stadler ME, Wong YT, Shah RN, Rose AS, Zdanski CJ, Ebert CS Jr, Wheless SA, Senior BA, Drake AF, Zanation AM.

Am J Rhinol Allergy. 2010 Sep-Oct;24(5):385-8. doi: 10.2500/ajra.2010.24.3496.

37.

Contracture related airway obstruction (CRAO) treated successfully with incisional release.

Rose AS, Gore MR, Hultman CS, Cairns BA.

Int J Pediatr Otorhinolaryngol. 2011 Feb;75(2):286-8. doi: 10.1016/j.ijporl.2010.10.034. Epub 2010 Dec 15.

PMID:
21163536
38.

Blastomycosis in indiana: digging up more cases.

Carlos WG, Rose AS, Wheat LJ, Norris S, Sarosi GA, Knox KS, Hage CA.

Chest. 2010 Dec;138(6):1377-82. doi: 10.1378/chest.10-0627. Epub 2010 Jun 17.

PMID:
20558552
39.

Synthesis, metabolism and in vitro cytotoxicity studies on novel lavendamycin antitumor agents.

Cai W, Hassani M, Karki R, Walter ED, Koelsch KH, Seradj H, Lineswala JP, Mirzaei H, York JS, Olang F, Sedighi M, Lucas JS, Eads TJ, Rose AS, Charkhzarrin S, Hermann NG, Beall HD, Behforouz M.

Bioorg Med Chem. 2010 Mar 1;18(5):1899-909. doi: 10.1016/j.bmc.2010.01.037. Epub 2010 Jan 25.

40.

Surgical management of pulmonary and mediastinal sequelae of histoplasmosis: a challenging spectrum.

Hammoud ZT, Rose AS, Hage CA, Knox KS, Rieger K, Kesler KA.

Ann Thorac Surg. 2009 Aug;88(2):399-403. doi: 10.1016/j.athoracsur.2009.04.041.

PMID:
19632382
41.

Surgical treatment is warranted in aggressive central giant cell granuloma: a report of 2 cases.

Roberts J, Shores C, Rose AS.

Ear Nose Throat J. 2009 Mar;88(3):E8-E13.

PMID:
19291624
42.

High-resolution ultrasound in the evaluation of pediatric recurrent respiratory papillomatosis.

Bryson PC, Leight WD, Zdanski CJ, Drake AF, Rose AS.

Arch Otolaryngol Head Neck Surg. 2009 Mar;135(3):250-3. doi: 10.1001/archoto.2008.544.

PMID:
19289702
43.

Noise exposure levels in stock car auto racing.

Rose AS, Ebert CS Jr, Prazma J, Pillsbury HC 3rd.

Ear Nose Throat J. 2008 Dec;87(12):689-92.

PMID:
19105144
44.

Plain films in the evaluation of batteries as esophageal foreign bodies.

Lee SC, Ebert CS Jr, Fordham L, Rose AS.

Int J Pediatr Otorhinolaryngol. 2008 Oct;72(10):1487-91. doi: 10.1016/j.ijporl.2008.06.013. Epub 2008 Aug 8.

PMID:
18687477
45.

A 24-year-old man with mediastinal mass, dyspnea, and a pleural effusion.

Rose AS, Knox KS, Hage CA.

Chest. 2008 Jul;134(1):200-3. doi: 10.1378/chest.07-2487. No abstract available.

PMID:
18628226
46.

Hepatic, ocular, and cutaneous sarcoidosis.

Rose AS, Tielker MA, Knox KS.

Clin Chest Med. 2008 Sep;29(3):509-24, ix. doi: 10.1016/j.ccm.2008.03.008. Review.

PMID:
18539241
47.

Lavendamycin antitumor agents: structure-based design, synthesis, and NAD(P)H:quinone oxidoreductase 1 (NQO1) model validation with molecular docking and biological studies.

Hassani M, Cai W, Koelsch KH, Holley DC, Rose AS, Olang F, Lineswala JP, Holloway WG, Gerdes JM, Behforouz M, Beall HD.

J Med Chem. 2008 Jun 12;51(11):3104-15. doi: 10.1021/jm701066a. Epub 2008 May 6.

PMID:
18457384
48.

Formation of an airway foreign body during removal of a metal tracheostomy tube: a case report.

Gore MR, Rose AS.

Ear Nose Throat J. 2008 Mar;87(3):169-71.

PMID:
18404917
49.

Bronchoalveolar lavage as a research tool.

Rose AS, Knox KS.

Semin Respir Crit Care Med. 2007 Oct;28(5):561-73. Review.

PMID:
17975783
50.

Immune modulatory oligonucleotides in prevention of nasal allergen-induced Eustachian tube dysfunction in rats.

Ebert CS Jr, Rose AS, Blanks DA, Eapen RP, Kandimalla ER, Agrawal S, Prazma J, Pillsbury HC 3rd.

Otolaryngol Head Neck Surg. 2007 Aug;137(2):250-5.

PMID:
17666251

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