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Items: 1 to 50 of 57

1.

An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens.

Fernández N, Cabrera JJ, Varadarajan AR, Lutz S, Ledermann R, Roschitzki B, Eberl L, Bedmar EJ, Fischer HM, Pessi G, Ahrens CH, Mesa S.

Front Microbiol. 2019 May 7;10:924. doi: 10.3389/fmicb.2019.00924. eCollection 2019.

2.

Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis.

Faigle W, Cruciani C, Wolski W, Roschitzki B, Puthenparampil M, Tomas-Ojer P, Sellés-Moreno C, Zeis T, Jelcic I, Schaeren-Wiemers N, Sospedra M, Martin R.

Front Immunol. 2019 Apr 10;10:540. doi: 10.3389/fimmu.2019.00540. eCollection 2019.

3.

Engineered peptide barcodes for in-depth analyses of binding protein libraries.

Egloff P, Zimmermann I, Arnold FM, Hutter CAJ, Morger D, Opitz L, Poveda L, Keserue HA, Panse C, Roschitzki B, Seeger MA.

Nat Methods. 2019 May;16(5):421-428. doi: 10.1038/s41592-019-0389-8. Epub 2019 Apr 22.

PMID:
31011184
4.

Diurnal changes in concerted plant protein phosphorylation and acetylation in Arabidopsis organs and seedlings.

Uhrig RG, Schläpfer P, Roschitzki B, Hirsch-Hoffmann M, Gruissem W.

Plant J. 2019 Jul;99(1):176-194. doi: 10.1111/tpj.14315. Epub 2019 May 13.

PMID:
30920011
5.

In search of cerebrospinal fluid biomarkers of fatigue in multiple sclerosis: A proteomics study.

Valko PO, Roschitzki B, Faigle W, Grossmann J, Panse C, Biro P, Dambach M, Spahn DR, Weller M, Martin R, Baumann CR.

J Sleep Res. 2019 Jun;28(3):e12721. doi: 10.1111/jsr.12721. Epub 2018 Jul 1.

PMID:
29961995
6.

Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands.

Manzo M, Wirz J, Ambrosi C, Villaseñor R, Roschitzki B, Baubec T.

EMBO J. 2017 Dec 1;36(23):3421-3434. doi: 10.15252/embj.201797038. Epub 2017 Oct 26.

7.

Mycobacterium smegmatis PafBC is involved in regulation of DNA damage response.

Fudrini Olivencia B, Müller AU, Roschitzki B, Burger S, Weber-Ban E, Imkamp F.

Sci Rep. 2017 Oct 25;7(1):13987. doi: 10.1038/s41598-017-14410-z.

8.

Differential regulation of germ line apoptosis and germ cell differentiation by CPEB family members in C. elegans.

Singh KD, Zheng X, Milstein S, Keller M, Roschitzki B, Grossmann J, Hengartner MO.

PLoS One. 2017 Jul 31;12(7):e0182270. doi: 10.1371/journal.pone.0182270. eCollection 2017.

9.

Identification of Fungal T Cell Epitopes by Mass Spectrometry-Based Proteomics.

Roschitzki B, LeibundGut-Landmann S.

Methods Mol Biol. 2017;1625:65-74. doi: 10.1007/978-1-4939-7104-6_5.

PMID:
28584983
10.

Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver.

Chaubey PM, Hofstetter L, Roschitzki B, Stieger B.

PLoS One. 2016 Jun 27;11(6):e0158033. doi: 10.1371/journal.pone.0158033. eCollection 2016.

11.

Independent Candidate Serum Protein Biomarkers of Response to Adalimumab and to Infliximab in Rheumatoid Arthritis: An Exploratory Study.

Ortea I, Roschitzki B, López-Rodríguez R, Tomero EG, Ovalles JG, López-Longo J, de la Torre I, González-Alvaro I, Gómez-Reino JJ, González A.

PLoS One. 2016 Apr 6;11(4):e0153140. doi: 10.1371/journal.pone.0153140. eCollection 2016.

12.

Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways.

Singh KD, Roschitzki B, Snoek LB, Grossmann J, Zheng X, Elvin M, Kamkina P, Schrimpf SP, Poulin GB, Kammenga JE, Hengartner MO.

PLoS One. 2016 Mar 17;11(3):e0149418. doi: 10.1371/journal.pone.0149418. eCollection 2016.

13.

Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.

Kamkina P, Snoek LB, Grossmann J, Volkers RJ, Sterken MG, Daube M, Roschitzki B, Fortes C, Schlapbach R, Roth A, von Mering C, Hengartner MO, Schrimpf SP, Kammenga JE.

Mol Cell Proteomics. 2016 May;15(5):1670-80. doi: 10.1074/mcp.M115.052548. Epub 2016 Mar 4.

14.

High-throughput proteomics reveal alarmins as amplifiers of tissue pathology and inflammation after spinal cord injury.

Didangelos A, Puglia M, Iberl M, Sanchez-Bellot C, Roschitzki B, Bradbury EJ.

Sci Rep. 2016 Feb 22;6:21607. doi: 10.1038/srep21607.

15.

Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications.

Hegedűs T, Chaubey PM, Várady G, Szabó E, Sarankó H, Hofstetter L, Roschitzki B, Stieger B, Sarkadi B.

Database (Oxford). 2015 Jun 14;2015:bav056. doi: 10.1093/database/bav056. Print 2015.

16.

XBP1 mitigates aminoglycoside-induced endoplasmic reticulum stress and neuronal cell death.

Oishi N, Duscha S, Boukari H, Meyer M, Xie J, Wei G, Schrepfer T, Roschitzki B, Boettger EC, Schacht J.

Cell Death Dis. 2015 May 14;6:e1763. doi: 10.1038/cddis.2015.108.

17.

Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).

Lu Q, Ding S, Reiland S, Rödiger A, Roschitzki B, Xue P, Gruissem W, Lu C, Baginsky S.

J Exp Bot. 2015 Jan;66(1):175-87. doi: 10.1093/jxb/eru405. Epub 2014 Oct 14.

18.

Infusion of anti-Nogo-A antibodies in adult rats increases growth and synapse related proteins in the absence of behavioral alterations.

Craveiro LM, Weinmann O, Roschitzki B, Gonzenbach RR, Zörner B, Montani L, Yee BK, Feldon J, Willi R, Schwab ME.

Exp Neurol. 2013 Dec;250:52-68. doi: 10.1016/j.expneurol.2013.09.015. Epub 2013 Sep 25.

PMID:
24076004
19.

Early insights into the function of KIAA1199, a markedly overexpressed protein in human colorectal tumors.

Tiwari A, Schneider M, Fiorino A, Haider R, Okoniewski MJ, Roschitzki B, Uzozie A, Menigatti M, Jiricny J, Marra G.

PLoS One. 2013 Jul 23;8(7):e69473. doi: 10.1371/journal.pone.0069473. Print 2013.

20.

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome.

Omasits U, Quebatte M, Stekhoven DJ, Fortes C, Roschitzki B, Robinson MD, Dehio C, Ahrens CH.

Genome Res. 2013 Nov;23(11):1916-27. doi: 10.1101/gr.151035.112. Epub 2013 Jul 22.

21.

Characterization of recombinant human and bovine thyroid-stimulating hormone preparations by mass spectrometry and determination of their endotoxin content.

Schaefer S, Hassa PO, Sieber-Ruckstuhl NS, Piechotta M, Reusch CE, Roschitzki B, Boretti FS.

BMC Vet Res. 2013 Jul 16;9:141. doi: 10.1186/1746-6148-9-141.

22.

Secretome analysis defines the major role of SecDF in Staphylococcus aureus virulence.

Quiblier C, Seidl K, Roschitzki B, Zinkernagel AS, Berger-Bächi B, Senn MM.

PLoS One. 2013 May 3;8(5):e63513. doi: 10.1371/journal.pone.0063513. Print 2013.

23.

iTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections.

Trinh HV, Grossmann J, Gehrig P, Roschitzki B, Schlapbach R, Greber UF, Hemmi S.

Int J Proteomics. 2013;2013:581862. doi: 10.1155/2013/581862. Epub 2013 Mar 11.

24.

Altered activation of endothelial anti- and proapoptotic pathways by high-density lipoprotein from patients with coronary artery disease: role of high-density lipoprotein-proteome remodeling.

Riwanto M, Rohrer L, Roschitzki B, Besler C, Mocharla P, Mueller M, Perisa D, Heinrich K, Altwegg L, von Eckardstein A, Lüscher TF, Landmesser U.

Circulation. 2013 Feb 26;127(8):891-904. doi: 10.1161/CIRCULATIONAHA.112.108753. Epub 2013 Jan 24.

25.

Soil metaproteomics - Comparative evaluation of protein extraction protocols.

Keiblinger KM, Wilhartitz IC, Schneider T, Roschitzki B, Schmid E, Eberl L, Riedel K, Zechmeister-Boltenstern S.

Soil Biol Biochem. 2012 Nov;54(15-10):14-24.

26.

Antibody phage display assisted identification of junction plakoglobin as a potential biomarker for atherosclerosis.

Cooksley-Decasper S, Reiser H, Thommen DS, Biedermann B, Neidhart M, Gawinecka J, Cathomas G, Franzeck FC, Wyss C, Klingenberg R, Nanni P, Roschitzki B, Matter C, Wolint P, Emmert MY, Husmann M, Amann-Vesti B, Maier W, Gay S, Lüscher TF, von Eckardstein A, Hof D.

PLoS One. 2012;7(10):e47985. doi: 10.1371/journal.pone.0047985. Epub 2012 Oct 24.

27.

Discovery of serum proteomic biomarkers for prediction of response to infliximab (a monoclonal anti-TNF antibody) treatment in rheumatoid arthritis: an exploratory analysis.

Ortea I, Roschitzki B, Ovalles JG, Longo JL, de la Torre I, González I, Gómez-Reino JJ, González A.

J Proteomics. 2012 Dec 21;77:372-82. doi: 10.1016/j.jprot.2012.09.011. Epub 2012 Sep 20.

28.

Identification of proteins associated with the Pseudomonas aeruginosa biofilm extracellular matrix.

Toyofuku M, Roschitzki B, Riedel K, Eberl L.

J Proteome Res. 2012 Oct 5;11(10):4906-15. doi: 10.1021/pr300395j. Epub 2012 Sep 26.

PMID:
22909304
29.

Characterization of the phosphoproteome of mature Arabidopsis pollen.

Mayank P, Grossman J, Wuest S, Boisson-Dernier A, Roschitzki B, Nanni P, Nühse T, Grossniklaus U.

Plant J. 2012 Oct;72(1):89-101. doi: 10.1111/j.1365-313X.2012.05061.x. Epub 2012 Jul 12.

30.

A novel Th cell epitope of Candida albicans mediates protection from fungal infection.

Bär E, Gladiator A, Bastidas S, Roschitzki B, Acha-Orbea H, Oxenius A, LeibundGut-Landmann S.

J Immunol. 2012 Jun 1;188(11):5636-43. doi: 10.4049/jimmunol.1200594. Epub 2012 Apr 23.

31.

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.

Schneider T, Keiblinger KM, Schmid E, Sterflinger-Gleixner K, Ellersdorfer G, Roschitzki B, Richter A, Eberl L, Zechmeister-Boltenstern S, Riedel K.

ISME J. 2012 Sep;6(9):1749-62. doi: 10.1038/ismej.2012.11. Epub 2012 Mar 8.

32.

Insights into the gene expression profile of uncultivable hemotrophic Mycoplasma suis during acute infection, obtained using proteome analysis.

Felder KM, Carranza PM, Gehrig PM, Roschitzki B, Barkow-Oesterreicher S, Hoelzle K, Riedel K, Kube M, Hoelzle LE.

J Bacteriol. 2012 Mar;194(6):1505-14. doi: 10.1128/JB.00002-12. Epub 2012 Jan 20.

33.

Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins.

Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi PA, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W, Baginsky S.

Plant Cell. 2011 Nov;23(11):3911-28. doi: 10.1105/tpc.111.092882. Epub 2011 Nov 29.

34.

Identification of distinct amino acids as ADP-ribose acceptor sites by mass spectrometry.

Rosenthal F, Messner S, Roschitzki B, Gehrig P, Nanni P, Hottiger MO.

Methods Mol Biol. 2011;780:57-66. doi: 10.1007/978-1-61779-270-0_4.

PMID:
21870254
35.

Recognition of host proteins by Helicobacter cysteine-rich protein C.

Roschitzki B, Schauer S, Mittl PR.

Curr Microbiol. 2011 Sep;63(3):239-49. doi: 10.1007/s00284-011-9969-2. Epub 2011 Jul 7.

PMID:
21735226
36.

Activity-based proteomics: identification of ABHD11 and ESD activities as potential biomarkers for human lung adenocarcinoma.

Wiedl T, Arni S, Roschitzki B, Grossmann J, Collaud S, Soltermann A, Hillinger S, Aebersold R, Weder W.

J Proteomics. 2011 Sep 6;74(10):1884-94. doi: 10.1016/j.jprot.2011.04.030. Epub 2011 May 9.

PMID:
21596165
37.

Extracellular hemoglobin polarizes the macrophage proteome toward Hb-clearance, enhanced antioxidant capacity and suppressed HLA class 2 expression.

Kaempfer T, Duerst E, Gehrig P, Roschitzki B, Rutishauser D, Grossmann J, Schoedon G, Vallelian F, Schaer DJ.

J Proteome Res. 2011 May 6;10(5):2397-408. doi: 10.1021/pr101230y. Epub 2011 Apr 14.

PMID:
21405025
38.

Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast.

Bodenmiller B, Wanka S, Kraft C, Urban J, Campbell D, Pedrioli PG, Gerrits B, Picotti P, Lam H, Vitek O, Brusniak MY, Roschitzki B, Zhang C, Shokat KM, Schlapbach R, Colman-Lerner A, Nolan GP, Nesvizhskii AI, Peter M, Loewith R, von Mering C, Aebersold R.

Sci Signal. 2010 Dec 21;3(153):rs4. doi: 10.1126/scisignal.2001182.

39.

A proteomics approach to study synergistic and antagonistic interactions of the fungal-bacterial consortium Fusarium oxysporum wild-type MSA 35.

Moretti M, Grunau A, Minerdi D, Gehrig P, Roschitzki B, Eberl L, Garibaldi A, Gullino ML, Riedel K.

Proteomics. 2010 Sep;10(18):3292-320. doi: 10.1002/pmic.200900716.

PMID:
20707000
40.

Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods.

Grossmann J, Roschitzki B, Panse C, Fortes C, Barkow-Oesterreicher S, Rutishauser D, Schlapbach R.

J Proteomics. 2010 Aug 5;73(9):1740-6. doi: 10.1016/j.jprot.2010.05.011. Epub 2010 May 31.

PMID:
20576481
41.

PARP1 ADP-ribosylates lysine residues of the core histone tails.

Messner S, Altmeyer M, Zhao H, Pozivil A, Roschitzki B, Gehrig P, Rutishauser D, Huang D, Caflisch A, Hottiger MO.

Nucleic Acids Res. 2010 Oct;38(19):6350-62. doi: 10.1093/nar/gkq463. Epub 2010 Jun 4.

42.

Tyrosine phosphorylation by Src within the cavity of the adenine nucleotide translocase 1 regulates ADP/ATP exchange in mitochondria.

Feng J, Lucchinetti E, Enkavi G, Wang Y, Gehrig P, Roschitzki B, Schaub MC, Tajkhorshid E, Zaugg K, Zaugg M.

Am J Physiol Cell Physiol. 2010 Mar;298(3):C740-8. doi: 10.1152/ajpcell.00310.2009. Epub 2009 Dec 9.

43.

Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster.

Goetze S, Qeli E, Mosimann C, Staes A, Gerrits B, Roschitzki B, Mohanty S, Niederer EM, Laczko E, Timmerman E, Lange V, Hafen E, Aebersold R, Vandekerckhove J, Basler K, Ahrens CH, Gevaert K, Brunner E.

PLoS Biol. 2009 Nov;7(11):e1000236. doi: 10.1371/journal.pbio.1000236. Epub 2009 Nov 3.

44.

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.

Delmotte N, Knief C, Chaffron S, Innerebner G, Roschitzki B, Schlapbach R, von Mering C, Vorholt JA.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16428-33. doi: 10.1073/pnas.0905240106. Epub 2009 Sep 4.

45.

Polystyrene beads as an alternative support material for epitope identification of a prion-antibody interaction using proteolytic excision-mass spectrometry.

Pimenova T, Meier L, Roschitzki B, Paraschiv G, Przybylski M, Zenobi R.

Anal Bioanal Chem. 2009 Nov;395(5):1395-401. doi: 10.1007/s00216-009-3119-8. Epub 2009 Sep 30.

PMID:
19787344
46.

Analysis of Ewing sarcoma (EWS)-binding proteins: interaction with hnRNP M, U, and RNA-helicases p68/72 within protein-RNA complexes.

Pahlich S, Quero L, Roschitzki B, Leemann-Zakaryan RP, Gehring H.

J Proteome Res. 2009 Oct;8(10):4455-65. doi: 10.1021/pr900235t.

PMID:
19673543
47.

Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen.

Carranza P, Hartmann I, Lehner A, Stephan R, Gehrig P, Grossmann J, Barkow-Oesterreicher S, Roschitzki B, Eberl L, Riedel K.

Proteomics. 2009 Jul;9(13):3564-79. doi: 10.1002/pmic.200900016.

PMID:
19609963
48.

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

Grobei MA, Qeli E, Brunner E, Rehrauer H, Zhang R, Roschitzki B, Basler K, Ahrens CH, Grossniklaus U.

Genome Res. 2009 Oct;19(10):1786-800. doi: 10.1101/gr.089060.108. Epub 2009 Jun 22.

49.

Phosphorylated serine and threonine residues promote site-specific fragmentation of singly charged, arginine-containing peptide ions.

Gehrig PM, Roschitzki B, Rutishauser D, Reiland S, Schlapbach R.

Rapid Commun Mass Spectrom. 2009 May;23(10):1435-45. doi: 10.1002/rcm.4019.

PMID:
19353557
50.

Phosphoproteome analysis of isoflurane-protected heart mitochondria: phosphorylation of adenine nucleotide translocator-1 on Tyr194 regulates mitochondrial function.

Feng J, Zhu M, Schaub MC, Gehrig P, Roschitzki B, Lucchinetti E, Zaugg M.

Cardiovasc Res. 2008 Oct 1;80(1):20-9. doi: 10.1093/cvr/cvn161. Epub 2008 Jun 16.

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