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Items: 1 to 50 of 181

1.

Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate.

Pinhal S, Ropers D, Geiselmann J, de Jong H.

J Bacteriol. 2019 Jun 10;201(13). pii: e00147-19. doi: 10.1128/JB.00147-19. Print 2019 Jul 1.

2.

An ensemble of mathematical models showing diauxic growth behaviour.

Kremling A, Geiselmann J, Ropers D, de Jong H.

BMC Syst Biol. 2018 Sep 21;12(1):82. doi: 10.1186/s12918-018-0604-8.

3.

Principal process analysis of biological models.

Casagranda S, Touzeau S, Ropers D, Gouzé JL.

BMC Syst Biol. 2018 Jun 14;12(1):68. doi: 10.1186/s12918-018-0586-6.

4.

Reduction and Stability Analysis of a Transcription-Translation Model of RNA Polymerase.

Belgacem I, Casagranda S, Grac E, Ropers D, Gouzé JL.

Bull Math Biol. 2018 Feb;80(2):294-318. doi: 10.1007/s11538-017-0372-4. Epub 2017 Dec 6.

PMID:
29214429
5.

Mathematical modelling of microbes: metabolism, gene expression and growth.

de Jong H, Casagranda S, Giordano N, Cinquemani E, Ropers D, Geiselmann J, Gouzé JL.

J R Soc Interface. 2017 Nov;14(136). pii: 20170502. doi: 10.1098/rsif.2017.0502. Review.

6.

The Csr System Regulates Escherichia coli Fitness by Controlling Glycogen Accumulation and Energy Levels.

Morin M, Ropers D, Cinquemani E, Portais JC, Enjalbert B, Cocaign-Bousquet M.

MBio. 2017 Oct 31;8(5). pii: e01628-17. doi: 10.1128/mBio.01628-17.

7.

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data.

Cinquemani E, Laroute V, Cocaign-Bousquet M, de Jong H, Ropers D.

Bioinformatics. 2017 Jul 15;33(14):i301-i310. doi: 10.1093/bioinformatics/btx250.

8.

Appropriateness of Oral Anticoagulants for the Long-Term Treatment of Atrial Fibrillation in Older People: Results of an Evidence-Based Review and International Consensus Validation Process (OAC-FORTA 2016).

Wehling M, Collins R, Gil VM, Hanon O, Hardt R, Hoffmeister M, Monteiro P, Quinn TJ, Ropers D, Sergi G, Verheugt FWA.

Drugs Aging. 2017 Jul;34(7):499-507. doi: 10.1007/s40266-017-0466-6. Review.

PMID:
28493216
9.

Resource Reallocation in Bacteria by Reengineering the Gene Expression Machinery.

de Jong H, Geiselmann J, Ropers D.

Trends Microbiol. 2017 Jun;25(6):480-493. doi: 10.1016/j.tim.2016.12.009. Epub 2017 Jan 16. Review.

PMID:
28110800
10.

Data for the qualitative modeling of the osmotic stress response to NaCl in Escherichia coli.

Ropers D, Métris A.

Data Brief. 2016 Sep 22;9:606-612. eCollection 2016 Dec.

11.

Piecewise linear approximations to model the dynamics of adaptation to osmotic stress by food-borne pathogens.

Métris A, George SM, Ropers D.

Int J Food Microbiol. 2017 Jan 2;240:63-74. doi: 10.1016/j.ijfoodmicro.2016.06.022. Epub 2016 Jun 22.

PMID:
27377009
12.

The post-transcriptional regulatory system CSR controls the balance of metabolic pools in upper glycolysis of Escherichia coli.

Morin M, Ropers D, Letisse F, Laguerre S, Portais JC, Cocaign-Bousquet M, Enjalbert B.

Mol Microbiol. 2016 May;100(4):686-700. doi: 10.1111/mmi.13343. Epub 2016 Feb 26.

13.

A synthetic growth switch based on controlled expression of RNA polymerase.

Izard J, Gomez Balderas CD, Ropers D, Lacour S, Song X, Yang Y, Lindner AB, Geiselmann J, de Jong H.

Mol Syst Biol. 2015 Nov 23;11(11):840. doi: 10.15252/msb.20156382.

14.

Robust reconstruction of gene expression profiles from reporter gene data using linear inversion.

Zulkower V, Page M, Ropers D, Geiselmann J, de Jong H.

Bioinformatics. 2015 Jun 15;31(12):i71-9. doi: 10.1093/bioinformatics/btv246.

15.

Understanding carbon catabolite repression in Escherichia coli using quantitative models.

Kremling A, Geiselmann J, Ropers D, de Jong H.

Trends Microbiol. 2015 Feb;23(2):99-109. doi: 10.1016/j.tim.2014.11.002. Epub 2014 Dec 2. Review.

PMID:
25475882
16.

[Optimal stroke prevention in the geriatric patient with atrial fibrillation: position paper of an interdisciplinary expert panel].

Bahrmann P, Wehling M, Ropers D, Flohr J, Leischker A, Röther J.

MMW Fortschr Med. 2014 Oct 9;156 Suppl 3:84-8. German. Erratum in: MMW Fortschr Med. 2014 Dec 15;156 Suppl 4:135.

PMID:
25417446
17.

Optimal Stroke Prevention in the Geriatric Patient with Atrial Fibrillation: Position Paper of an Interdisciplinary Expert Panel.

Bahrmann P, Wehling M, Ropers D, Flohr J, Leischker A, Röther J.

Drug Res (Stuttg). 2015 Oct;65(10):505-14. doi: 10.1055/s-0034-1389984. Epub 2014 Oct 6. Review.

PMID:
25285794
18.

Accuracy of prospectively ECG-triggered very low-dose coronary dual-source CT angiography using iterative reconstruction for the detection of coronary artery stenosis: comparison with invasive catheterization.

Layritz C, Schmid J, Achenbach S, Ulzheimer S, Wuest W, May M, Ropers D, Klinghammer L, Daniel WG, Pflederer T, Lell M.

Eur Heart J Cardiovasc Imaging. 2014 Nov;15(11):1238-45. doi: 10.1093/ehjci/jeu113. Epub 2014 Jun 17.

PMID:
24939952
19.

Multicenter Evaluation Of Coronary Dual-Source CT angiography in patients with intermediate Risk of Coronary Artery Stenoses (MEDIC): study design and rationale.

Marwan M, Hausleiter J, Abbara S, Hoffmann U, Becker C, Ovrehus K, Ropers D, Bathina R, Berman D, Anders K, Uder M, Meave A, Alexánderson E, Achenbach S.

J Cardiovasc Comput Tomogr. 2014 May-Jun;8(3):183-8. doi: 10.1016/j.jcct.2014.04.006. Epub 2014 Apr 30.

PMID:
24939066
20.

Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: how proteomics can play a key role in metabolic engineering.

Trauchessec M, Jaquinod M, Bonvalot A, Brun V, Bruley C, Ropers D, de Jong H, Garin J, Bestel-Corre G, Ferro M.

Mol Cell Proteomics. 2014 Apr;13(4):954-68. doi: 10.1074/mcp.M113.032672. Epub 2014 Jan 29.

21.

Histamine in atrial fibrillation (AF)--is there any connection? Results from an unselected population.

Layritz CM, Hagel AF, Graf V, Reiser C, Klinghammer L, Ropers D, Achenbach S, Raithel M.

Int J Cardiol. 2014 Apr 1;172(3):e432-3. doi: 10.1016/j.ijcard.2013.12.185. Epub 2014 Jan 8. No abstract available.

PMID:
24476699
22.

Stent evaluation in low-dose coronary CT angiography: effect of different iterative reconstruction settings.

Wuest W, May MS, Scharf M, Layritz C, Eisentopf J, Ropers D, Pflederer T, Uder M, Achenbach S, Lell MM.

J Cardiovasc Comput Tomogr. 2013 Sep-Oct;7(5):319-25. doi: 10.1016/j.jcct.2013.08.012. Epub 2013 Sep 26.

PMID:
24268119
23.

Automated attenuation-based selection of tube voltage and tube current for coronary CT angiography: reduction of radiation exposure versus a BMI-based strategy with an expert investigator.

Layritz C, Muschiol G, Flohr T, Bietau C, Marwan M, Schuhbaeck A, Schmid J, Ropers D, Achenbach S, Pflederer T.

J Cardiovasc Comput Tomogr. 2013 Sep-Oct;7(5):303-10. doi: 10.1016/j.jcct.2013.08.010. Epub 2013 Sep 26.

PMID:
24268117
24.

A genome-wide screen for identifying all regulators of a target gene.

Baptist G, Pinel C, Ranquet C, Izard J, Ropers D, de Jong H, Geiselmann J.

Nucleic Acids Res. 2013 Sep;41(17):e164. doi: 10.1093/nar/gkt655. Epub 2013 Jul 26.

25.

Low-dose dual-source CT angiography with iterative reconstruction for coronary artery stent evaluation.

Eisentopf J, Achenbach S, Ulzheimer S, Layritz C, Wuest W, May M, Lell M, Ropers D, Klinghammer L, Daniel WG, Pflederer T.

JACC Cardiovasc Imaging. 2013 Apr;6(4):458-65. doi: 10.1016/j.jcmg.2012.10.023. Epub 2013 Mar 14.

26.

CT predictors of post-procedural aortic regurgitation in patients referred for transcatheter aortic valve implantation: an analysis of 105 patients.

Marwan M, Achenbach S, Ensminger SM, Pflederer T, Ropers D, Ludwig J, Weyand M, Daniel WG, Arnold M.

Int J Cardiovasc Imaging. 2013 Jun;29(5):1191-8. doi: 10.1007/s10554-013-0197-7. Epub 2013 Feb 19.

PMID:
23420354
27.

Patient-specific predictors of image noise in coronary CT angiography.

Schuhbaeck A, Schaefer M, Marwan M, Gauss S, Muschiol G, Lell M, Pflederer T, Ropers D, Rixe J, Hamm C, Daniel WG, Achenbach S.

J Cardiovasc Comput Tomogr. 2013 Jan-Feb;7(1):39-45. doi: 10.1016/j.jcct.2012.10.011. Epub 2012 Dec 4.

PMID:
23352772
28.

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell.

Berthoumieux S, de Jong H, Baptist G, Pinel C, Ranquet C, Ropers D, Geiselmann J.

Mol Syst Biol. 2013;9:634. doi: 10.1038/msb.2012.70.

29.

Very low-dose coronary artery calcium scanning with high-pitch spiral acquisition mode: comparison between 120-kV and 100-kV tube voltage protocols.

Marwan M, Mettin C, Pflederer T, Seltmann M, Schuhbäck A, Muschiol G, Ropers D, Daniel WG, Achenbach S.

J Cardiovasc Comput Tomogr. 2013 Jan-Feb;7(1):32-8. doi: 10.1016/j.jcct.2012.11.004. Epub 2012 Dec 1.

PMID:
23333186
30.

A method to determine suitable fluoroscopic projections for transcatheter aortic valve implantation by computed tomography.

Arnold M, Achenbach S, Pfeiffer I, Ensminger S, Marwan M, Einhaus F, Pflederer T, Ropers D, Schuhbaeck A, Anders K, Lell M, Uder M, Ludwig J, Weyand M, Daniel WG, Feyrer R.

J Cardiovasc Comput Tomogr. 2012 Nov-Dec;6(6):422-8. doi: 10.1016/j.jcct.2012.10.008. Epub 2012 Nov 3.

PMID:
23217463
31.

Image quality of ultra-low radiation exposure coronary CT angiography with an effective dose <0.1 mSv using high-pitch spiral acquisition and raw data-based iterative reconstruction.

Schuhbaeck A, Achenbach S, Layritz C, Eisentopf J, Hecker F, Pflederer T, Gauss S, Rixe J, Kalender W, Daniel WG, Lell M, Ropers D.

Eur Radiol. 2013 Mar;23(3):597-606. doi: 10.1007/s00330-012-2656-2. Epub 2012 Sep 16.

PMID:
22983283
32.

Interobserver agreement for the detection of atherosclerotic plaque in coronary CT angiography: comparison of two low-dose image acquisition protocols with standard retrospectively ECG-gated reconstruction.

Schuhbäck A, Marwan M, Gauss S, Muschiol G, Ropers D, Schneider C, Lell M, Rixe J, Hamm C, Daniel WG, Achenbach S.

Eur Radiol. 2012 Jul;22(7):1529-36. doi: 10.1007/s00330-012-2389-2. Epub 2012 Mar 27.

PMID:
22661076
33.

Influence of heart rate and phase of the cardiac cycle on the occurrence of motion artifact in dual-source CT angiography of the coronary arteries.

Achenbach S, Manolopoulos M, Schuhbäck A, Ropers D, Rixe J, Schneider C, Krombach GA, Uder M, Hamm C, Daniel WG, Lell M.

J Cardiovasc Comput Tomogr. 2012 Mar-Apr;6(2):91-8. doi: 10.1016/j.jcct.2011.11.006. Epub 2012 Jan 28.

PMID:
22381662
34.

Left ventricular thrombus attenuation characterization in cardiac computed tomography angiography.

Bittencourt MS, Achenbach S, Marwan M, Seltmann M, Muschiol G, Ropers D, Daniel WG, Pflederer T.

J Cardiovasc Comput Tomogr. 2012 Mar-Apr;6(2):121-6. doi: 10.1016/j.jcct.2011.12.006. Epub 2012 Jan 28.

PMID:
22342878
35.

Genetic network analyzer: a tool for the qualitative modeling and simulation of bacterial regulatory networks.

Batt G, Besson B, Ciron PE, de Jong H, Dumas E, Geiselmann J, Monte R, Monteiro PT, Page M, Rechenmann F, Ropers D.

Methods Mol Biol. 2012;804:439-62. doi: 10.1007/978-1-61779-361-5_22.

PMID:
22144166
36.

Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli.

Baldazzi V, Ropers D, Geiselmann J, Kahn D, de Jong H.

J Theor Biol. 2012 Feb 21;295:100-15. doi: 10.1016/j.jtbi.2011.11.010. Epub 2011 Nov 28.

PMID:
22138386
37.

Qualitative modelling and formal verification of the FLR1 gene mancozeb response in Saccharomyces cerevisiae.

Monteiro PT, Dias PJ, Ropers D, Oliveira AL, Sá-Correia I, Teixeira MC, Freitas AT.

IET Syst Biol. 2011 Sep;5(5):308-16. doi: 10.1049/iet-syb.2011.0001.

PMID:
22010757
38.

Accuracy of dual-source CT to identify significant coronary artery disease in patients with uncontrolled hypertension presenting with chest pain: comparison with coronary angiography.

Marwan M, Pflederer T, Schepis T, Seltmann M, Klinghammer L, Muschiol G, Ropers D, Daniel WG, Achenbach S.

Int J Cardiovasc Imaging. 2012 Jun;28(5):1173-80. doi: 10.1007/s10554-011-9907-1. Epub 2011 Jun 19.

PMID:
21688136
39.

Which concentration to choose in dual flow cardiac CT?: dual flow cardiac CT.

Wuest W, Anders K, Scharf M, May M, Brand M, Uder M, Ropers D, Achenbach S, Kuettner A.

Eur J Radiol. 2012 Apr;81(4):e461-6. doi: 10.1016/j.ejrad.2011.05.007. Epub 2011 Jun 2.

PMID:
21640535
40.

Detection of coronary artery stenoses by low-dose, prospectively ECG-triggered, high-pitch spiral coronary CT angiography.

Achenbach S, Goroll T, Seltmann M, Pflederer T, Anders K, Ropers D, Daniel WG, Uder M, Lell M, Marwan M.

JACC Cardiovasc Imaging. 2011 Apr;4(4):328-37. doi: 10.1016/j.jcmg.2011.01.012.

41.

Myocardial viability by dual-energy delayed enhancement computed tomography.

Hamilton-Craig C, Seltmann M, Ropers D, Achenbach S.

JACC Cardiovasc Imaging. 2011 Feb;4(2):207-8. doi: 10.1016/j.jcmg.2010.08.020. No abstract available.

42.

Coronary vessel and luminal area measurement using dual-source computed tomography in comparison with intravascular ultrasound: effect of window settings on measurement accuracy.

Marwan M, Pflederer T, Schepis T, Seltmann M, Ropers D, Daniel WG, Achenbach S.

J Comput Assist Tomogr. 2011 Jan-Feb;35(1):113-8. doi: 10.1097/RCT.0b013e3181f7cb30.

PMID:
21245696
43.

In vivo CT detection of lipid-rich coronary artery atherosclerotic plaques using quantitative histogram analysis: a head to head comparison with IVUS.

Marwan M, Taher MA, El Meniawy K, Awadallah H, Pflederer T, Schuhbäck A, Ropers D, Daniel WG, Achenbach S.

Atherosclerosis. 2011 Mar;215(1):110-5. doi: 10.1016/j.atherosclerosis.2010.12.006. Epub 2010 Dec 16.

PMID:
21227419
44.

Right coronary artery fistula to the coronary sinus and right atrium associated with giant right coronary enlargement detected by transthoracic echocardiography.

Bittencourt MS, Seltman M, Achenbach S, Rost C, Ropers D.

Eur J Echocardiogr. 2011 Mar;12(3):E22. doi: 10.1093/ejechocard/jeq180. Epub 2010 Dec 23.

PMID:
21186199
45.

Iterative reconstruction in image space (IRIS) in cardiac computed tomography: initial experience.

Bittencourt MS, Schmidt B, Seltmann M, Muschiol G, Ropers D, Daniel WG, Achenbach S.

Int J Cardiovasc Imaging. 2011 Oct;27(7):1081-7. doi: 10.1007/s10554-010-9756-3. Epub 2010 Dec 1.

PMID:
21120612
46.

Embolic cerebral insults after transapical aortic valve implantation detected by magnetic resonance imaging.

Arnold M, Schulz-Heise S, Achenbach S, Ott S, Dörfler A, Ropers D, Feyrer R, Einhaus F, Loders S, Mahmoud F, Roerick O, Daniel WG, Weyand M, Ensminger SM, Ludwig J.

JACC Cardiovasc Interv. 2010 Nov;3(11):1126-32. doi: 10.1016/j.jcin.2010.09.008.

47.

Safety, efficacy, and indications of beta-adrenergic receptor blockade to reduce heart rate prior to coronary CT angiography.

Mahabadi AA, Achenbach S, Burgstahler C, Dill T, Fischbach R, Knez A, Moshage W, Richartz BM, Ropers D, Schröder S, Silber S, Möhlenkamp S; Working group "Cardiac CT" of the German Cardiac Society.

Radiology. 2010 Dec;257(3):614-23. doi: 10.1148/radiol.10100140. Review.

PMID:
21084413
48.

Model reduction using piecewise-linear approximations preserves dynamic properties of the carbon starvation response in Escherichia coli.

Ropers D, Baldazzi V, de Jong H.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):166-81. doi: 10.1109/TCBB.2009.49.

PMID:
21071805
49.

Accuracy of dual-source computed tomography to identify significant coronary artery disease in patients with atrial fibrillation: comparison with coronary angiography.

Marwan M, Pflederer T, Schepis T, Lang A, Muschiol G, Ropers D, Daniel WG, Achenbach S.

Eur Heart J. 2010 Sep;31(18):2230-7. doi: 10.1093/eurheartj/ehq223. Epub 2010 Jul 11.

PMID:
20624768
50.

The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.

Baldazzi V, Ropers D, Markowicz Y, Kahn D, Geiselmann J, de Jong H.

PLoS Comput Biol. 2010 Jun 10;6(6):e1000812. doi: 10.1371/journal.pcbi.1000812. Erratum in: PLoS Comput Biol. 2010 Aug;6(8). doi: 10.1371/annotation/ed46bce4-e4e1-4df5-bad3-fac0770efeac.

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