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Items: 40

1.

Effects of Gene Dose, Chromatin, and Network Topology on Expression in Drosophila melanogaster.

Lee H, Cho DY, Whitworth C, Eisman R, Phelps M, Roote J, Kaufman T, Cook K, Russell S, Przytycka T, Oliver B.

PLoS Genet. 2016 Sep 6;12(9):e1006295. doi: 10.1371/journal.pgen.1006295. eCollection 2016 Sep.

2.

Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library.

Lowe N, Rees JS, Roote J, Ryder E, Armean IM, Johnson G, Drummond E, Spriggs H, Drummond J, Magbanua JP, Naylor H, Sanson B, Bastock R, Huelsmann S, Trovisco V, Landgraf M, Knowles-Barley S, Armstrong JD, White-Cooper H, Hansen C, Phillips RG; UK Drosophila Protein Trap Screening Consortium, Lilley KS, Russell S, St Johnston D.

Development. 2014 Oct;141(20):3994-4005. doi: 10.1242/dev.111054.

3.

Anent the genomics of spermatogenesis in Drosophila melanogaster.

Lindsley DL, Roote J, Kennison JA.

PLoS One. 2013;8(2):e55915. doi: 10.1371/journal.pone.0055915. Epub 2013 Feb 7.

4.

How to design a genetic mating scheme: a basic training package for Drosophila genetics.

Roote J, Prokop A.

G3 (Bethesda). 2013 Feb;3(2):353-8. doi: 10.1534/g3.112.004820. Epub 2013 Feb 1.

5.

Toward a complete Drosophila deficiency kit.

Roote J, Russell S.

Genome Biol. 2012;13(3):149. doi: 10.1186/gb-2012-13-3-149.

6.

Functional evidence that a recently evolved Drosophila sperm-specific gene boosts sperm competition.

Yeh SD, Do T, Chan C, Cordova A, Carranza F, Yamamoto EA, Abbassi M, Gandasetiawan KA, Librado P, Damia E, Dimitri P, Rozas J, Hartl DL, Roote J, Ranz JM.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2043-8. doi: 10.1073/pnas.1121327109. Epub 2012 Jan 23.

7.

Modeling serpin conformational diseases in Drosophila melanogaster.

Jahn TR, Malzer E, Roote J, Vishnivetskaya A, Imarisio S, Giannakou M, Panser K, Marciniak S, Crowther DC.

Methods Enzymol. 2011;499:227-58. doi: 10.1016/B978-0-12-386471-0.00012-2.

PMID:
21683257
8.

In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry.

Rees JS, Lowe N, Armean IM, Roote J, Johnson G, Drummond E, Spriggs H, Ryder E, Russell S, St Johnston D, Lilley KS.

Mol Cell Proteomics. 2011 Jun;10(6):M110.002386. doi: 10.1074/mcp.M110.002386. Epub 2011 Mar 29.

9.

Neighbourhood continuity is not required for correct testis gene expression in Drosophila.

Meadows LA, Chan YS, Roote J, Russell S.

PLoS Biol. 2010 Nov 30;8(11):e1000552. doi: 10.1371/journal.pbio.1000552.

10.

Distinct functions of Mst77F and protamines in nuclear shaping and chromatin condensation during Drosophila spermiogenesis.

Rathke C, Barckmann B, Burkhard S, Jayaramaiah-Raja S, Roote J, Renkawitz-Pohl R.

Eur J Cell Biol. 2010 Apr;89(4):326-38. doi: 10.1016/j.ejcb.2009.09.001. Epub 2010 Feb 6.

PMID:
20138392
11.

The multiple-wing-hairs gene encodes a novel GBD-FH3 domain-containing protein that functions both prior to and after wing hair initiation.

Yan J, Huen D, Morely T, Johnson G, Gubb D, Roote J, Adler PN.

Genetics. 2008 Sep;180(1):219-28. doi: 10.1534/genetics.108.091314. Epub 2008 Aug 24.

12.

The ribosomal protein genes and Minute loci of Drosophila melanogaster.

Marygold SJ, Roote J, Reuter G, Lambertsson A, Ashburner M, Millburn GH, Harrison PM, Yu Z, Kenmochi N, Kaufman TC, Leevers SJ, Cook KR.

Genome Biol. 2007;8(10):R216.

13.

The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource.

Ryder E, Ashburner M, Bautista-Llacer R, Drummond J, Webster J, Johnson G, Morley T, Chan YS, Blows F, Coulson D, Reuter G, Baisch H, Apelt C, Kauk A, Rudolph T, Kube M, Klimm M, Nickel C, Szidonya J, Maróy P, Pal M, Rasmuson-Lestander A, Ekström K, Stocker H, Hugentobler C, Hafen E, Gubb D, Pflugfelder G, Dorner C, Mechler B, Schenkel H, Marhold J, Serras F, Corominas M, Punset A, Roote J, Russell S.

Genetics. 2007 Sep;177(1):615-29. Epub 2007 Aug 24.

14.

Principles of genome evolution in the Drosophila melanogaster species group.

Ranz JM, Maurin D, Chan YS, von Grotthuss M, Hillier LW, Roote J, Ashburner M, Bergman CM.

PLoS Biol. 2007 Jun;5(6):e152.

15.

Maintenance of a Drosophila laboratory: general procedures.

Ashburner M, Roote J.

CSH Protoc. 2007 Mar 1;2007:pdb.ip35. doi: 10.1101/pdb.ip35.

PMID:
21357030
16.

Culture of Drosophila: the laboratory setup.

Ashburner M, Roote J.

CSH Protoc. 2007 Mar 1;2007:pdb.ip34. doi: 10.1101/pdb.ip34.

PMID:
21357029
17.

Drosophila crinkled, mutations of which disrupt morphogenesis and cause lethality, encodes fly myosin VIIA.

Kiehart DP, Franke JD, Chee MK, Montague RA, Chen TL, Roote J, Ashburner M.

Genetics. 2004 Nov;168(3):1337-52.

18.

Worniu, a Snail family zinc-finger protein, is required for brain development in Drosophila.

Ashraf SI, Ganguly A, Roote J, Ip YT.

Dev Dyn. 2004 Oct;231(2):379-86.

19.

The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster.

Ryder E, Blows F, Ashburner M, Bautista-Llacer R, Coulson D, Drummond J, Webster J, Gubb D, Gunton N, Johnson G, O'Kane CJ, Huen D, Sharma P, Asztalos Z, Baisch H, Schulze J, Kube M, Kittlaus K, Reuter G, Maroy P, Szidonya J, Rasmuson-Lestander A, Ekström K, Dickson B, Hugentobler C, Stocker H, Hafen E, Lepesant JA, Pflugfelder G, Heisenberg M, Mechler B, Serras F, Corominas M, Schneuwly S, Preat T, Roote J, Russell S.

Genetics. 2004 Jun;167(2):797-813.

20.

A new hybrid rescue allele in Drosophila melanogaster.

Barbash DA, Roote J, Johnson G, Ashburner M.

Genetica. 2004 Mar;120(1-3):261-6.

PMID:
15088664
21.

Genetic complexity underlying hybrid male sterility in Drosophila.

Sawamura K, Roote J, Wu CI, Yamamoto MT.

Genetics. 2004 Feb;166(2):789-96.

22.

A rapidly evolving MYB-related protein causes species isolation in Drosophila.

Barbash DA, Siino DF, Tarone AM, Roote J.

Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5302-7. Epub 2003 Apr 14.

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26.

stress sensitive B encodes an adenine nucleotide translocase in Drosophila melanogaster.

Zhang YQ, Roote J, Brogna S, Davis AW, Barbash DA, Nash D, Ashburner M.

Genetics. 1999 Oct;153(2):891-903.

27.

The balance between isoforms of the prickle LIM domain protein is critical for planar polarity in Drosophila imaginal discs.

Gubb D, Green C, Huen D, Coulson D, Johnson G, Tree D, Collier S, Roote J.

Genes Dev. 1999 Sep 1;13(17):2315-27.

28.

An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region.

Ashburner M, Misra S, Roote J, Lewis SE, Blazej R, Davis T, Doyle C, Galle R, George R, Harris N, Hartzell G, Harvey D, Hong L, Houston K, Hoskins R, Johnson G, Martin C, Moshrefi A, Palazzolo M, Reese MG, Spradling A, Tsang G, Wan K, Whitelaw K, Celniker S, et al.

Genetics. 1999 Sep;153(1):179-219.

29.
30.

Recovery of a marked translocation strain that will facilitate the isolation of balancer chromosomes in the Mediterranean fruit fly, Ceratitis capitata.

Gubb D, Zacharopoulou A, Livadaras Y, Gourzi P, Roote J, Savakis C.

Genome. 1998 Apr;41(2):256-65.

PMID:
9644834
31.

Negligible prevalence of antibodies against Trypanosoma cruzi among blood donors in the southeastern United States.

Barrett VJ, Leiby DA, Odom JL, Otani MM, Rowe JD, Roote JT, Cox KF, Brown KR, Hoiles JA, Saez-Alquézar A, Turrens JF.

Am J Clin Pathol. 1997 Nov;108(5):499-503.

PMID:
9353087
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34.

Rescue of hybrid sterility in crosses between D. melanogaster and D. simulans.

Davis AW, Roote J, Morley T, Sawamura K, Herrmann S, Ashburner M.

Nature. 1996 Mar 14;380(6570):157-9.

PMID:
8600389
35.

Gene disruptions using P transposable elements: an integral component of the Drosophila genome project.

Spradling AC, Stern DM, Kiss I, Roote J, Laverty T, Rubin GM.

Proc Natl Acad Sci U S A. 1995 Nov 21;92(24):10824-30. Review.

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38.

A novel transvection phenomenon affecting the white gene of Drosophila melanogaster.

Gubb D, Ashburner M, Roote J, Davis T.

Genetics. 1990 Sep;126(1):167-76.

39.

A genetic basis for the inviability of hybrids between sibling species of Drosophila.

Hutter P, Roote J, Ashburner M.

Genetics. 1990 Apr;124(4):909-20.

40.

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