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Items: 32

1.

Prostaglandin signaling regulates renal multiciliated cell specification and maturation.

Marra AN, Adeeb BD, Chambers BE, Drummond BE, Ulrich M, Addiego A, Springer M, Poureetezadi SJ, Chambers JM, Ronshaugen M, Wingert RA.

Proc Natl Acad Sci U S A. 2019 Apr 23;116(17):8409-8418. doi: 10.1073/pnas.1813492116. Epub 2019 Apr 4.

2.

Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis.

Ninova M, Griffiths-Jones S, Ronshaugen M.

Genome Biol. 2017 Sep 26;18(1):184. doi: 10.1186/s13059-017-1304-1.

3.

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.

Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, Eibner C, Extavour CG, Funch P, Garb J, Gonzalez LB, Gonzalez VL, Griffiths-Jones S, Han Y, Hayashi C, Hilbrant M, Hughes DST, Janssen R, Lee SL, Maeso I, Murali SC, Muzny DM, Nunes da Fonseca R, Paese CLB, Qu J, Ronshaugen M, Schomburg C, Schönauer A, Stollewerk A, Torres-Oliva M, Turetzek N, Vanthournout B, Werren JH, Wolff C, Worley KC, Bucher G, Gibbs RA, Coddington J, Oda H, Stanke M, Ayoub NA, Prpic NM, Flot JF, Posnien N, Richards S, McGregor AP.

BMC Biol. 2017 Jul 31;15(1):62. doi: 10.1186/s12915-017-0399-x.

4.

Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum.

Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP.

Genome Biol Evol. 2016 Aug 3;8(7):2133-44. doi: 10.1093/gbe/evw143.

5.

Functional and Genetic Analysis of Spectraplakins in Drosophila.

Hahn I, Ronshaugen M, Sánchez-Soriano N, Prokop A.

Methods Enzymol. 2016;569:373-405. doi: 10.1016/bs.mie.2015.06.022. Epub 2015 Jul 21.

PMID:
26778568
6.

MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum.

Ninova M, Ronshaugen M, Griffiths-Jones S.

Genome Res. 2016 Jan;26(1):85-96. doi: 10.1101/gr.193367.115. Epub 2015 Oct 30.

7.

The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.

Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, Blankenburg KP, Brites D, Capella-Gutiérrez S, Coyle M, Dearden PK, Du Pasquier L, Duncan EJ, Ebert D, Eibner C, Erikson G, Evans PD, Extavour CG, Francisco L, Gabaldón T, Gillis WJ, Goodwin-Horn EA, Green JE, Griffiths-Jones S, Grimmelikhuijzen CJ, Gubbala S, Guigó R, Han Y, Hauser F, Havlak P, Hayden L, Helbing S, Holder M, Hui JH, Hunn JP, Hunnekuhl VS, Jackson L, Javaid M, Jhangiani SN, Jiggins FM, Jones TE, Kaiser TS, Kalra D, Kenny NJ, Korchina V, Kovar CL, Kraus FB, Lapraz F, Lee SL, Lv J, Mandapat C, Manning G, Mariotti M, Mata R, Mathew T, Neumann T, Newsham I, Ngo DN, Ninova M, Okwuonu G, Ongeri F, Palmer WJ, Patil S, Patraquim P, Pham C, Pu LL, Putman NH, Rabouille C, Ramos OM, Rhodes AC, Robertson HE, Robertson HM, Ronshaugen M, Rozas J, Saada N, Sánchez-Gracia A, Scherer SE, Schurko AM, Siggens KW, Simmons D, Stief A, Stolle E, Telford MJ, Tessmar-Raible K, Thornton R, van der Zee M, von Haeseler A, Williams JM, Willis JH, Wu Y, Zou X, Lawson D, Muzny DM, Worley KC, Gibbs RA, Akam M, Richards S.

PLoS Biol. 2014 Nov 25;12(11):e1002005. doi: 10.1371/journal.pbio.1002005. eCollection 2014 Nov.

8.

Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model.

Ninova M, Ronshaugen M, Griffiths-Jones S.

Genome Biol Evol. 2014 Aug 27;6(9):2459-67. doi: 10.1093/gbe/evu183.

9.

Target repression induced by endogenous microRNAs: large differences, small effects.

Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M.

PLoS One. 2014 Aug 20;9(8):e104286. doi: 10.1371/journal.pone.0104286. eCollection 2014.

10.

Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis.

Ninova M, Ronshaugen M, Griffiths-Jones S.

RNA. 2014 Mar;20(3):360-72. doi: 10.1261/rna.041657.113. Epub 2014 Jan 21.

11.

Sex-biased expression of microRNAs in Schistosoma mansoni.

Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M.

PLoS Negl Trop Dis. 2013 Sep 12;7(9):e2402. doi: 10.1371/journal.pntd.0002402. eCollection 2013.

12.

Clusters of microRNAs emerge by new hairpins in existing transcripts.

Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S.

Nucleic Acids Res. 2013 Sep;41(16):7745-52. doi: 10.1093/nar/gkt534. Epub 2013 Jun 17.

13.

Evolution of mir-92a underlies natural morphological variation in Drosophila melanogaster.

Arif S, Murat S, Almudi I, Nunes MD, Bortolamiol-Becet D, McGregor NS, Currie JM, Hughes H, Ronshaugen M, Sucena É, Lai EC, Schlötterer C, McGregor AP.

Curr Biol. 2013 Mar 18;23(6):523-8. doi: 10.1016/j.cub.2013.02.018. Epub 2013 Feb 28.

14.

Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods.

Hui JH, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M.

Nucleic Acids Res. 2013 Mar 1;41(5):3352-61. doi: 10.1093/nar/gks1445. Epub 2013 Jan 17.

15.

MicroRNAs from the same precursor have different targeting properties.

Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S.

Silence. 2012 Sep 27;3(1):8. doi: 10.1186/1758-907X-3-8.

16.

MicroRNA evolution by arm switching.

Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M.

EMBO Rep. 2011 Feb;12(2):172-7. doi: 10.1038/embor.2010.191. Epub 2011 Jan 7.

17.

Functional shifts in insect microRNA evolution.

Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S.

Genome Biol Evol. 2010;2:686-96. doi: 10.1093/gbe/evq053. Epub 2010 Sep 3.

18.

Silencing of an abdominal Hox gene during early development is correlated with limb development in a crustacean trunk.

Hsia CC, Paré AC, Hannon M, Ronshaugen M, McGinnis W.

Evol Dev. 2010 Mar-Apr;12(2):131-43. doi: 10.1111/j.1525-142X.2010.00399.x.

19.

Context-dependent regulation of Hox protein functions by CK2 phosphorylation sites.

Taghli-Lamallem O, Hsia C, Ronshaugen M, McGinnis W.

Dev Genes Evol. 2008 Jun;218(6):321-32. doi: 10.1007/s00427-008-0224-1. Epub 2008 May 27.

20.

Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters.

Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE.

Dev Genes Evol. 2008 Apr;218(3-4):127-39. doi: 10.1007/s00427-008-0213-4. Epub 2008 Apr 8.

21.

Evolution of the ventral midline in insect embryos.

Zinzen RP, Cande J, Ronshaugen M, Papatsenko D, Levine M.

Dev Cell. 2006 Dec;11(6):895-902.

22.

Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array.

Biemar F, Nix DA, Piel J, Peterson B, Ronshaugen M, Sementchenko V, Bell I, Manak JR, Levine MS.

Proc Natl Acad Sci U S A. 2006 Aug 22;103(34):12763-8. Epub 2006 Aug 14.

23.

The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings.

Ronshaugen M, Biemar F, Piel J, Levine M, Lai EC.

Genes Dev. 2005 Dec 15;19(24):2947-52.

24.

Spatial regulation of microRNA gene expression in the Drosophila embryo.

Biemar F, Zinzen R, Ronshaugen M, Sementchenko V, Manak JR, Levine MS.

Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15907-11. Epub 2005 Oct 25.

25.
26.

pyramus and thisbe: FGF genes that pattern the mesoderm of Drosophila embryos.

Stathopoulos A, Tam B, Ronshaugen M, Frasch M, Levine M.

Genes Dev. 2004 Mar 15;18(6):687-99.

27.

Structure and expression patterns of Drosophila TULP and TUSP, members of the tubby-like gene family.

Ronshaugen M, McGinnis N, Inglis D, Chou D, Zhao J, McGinnis W.

Mech Dev. 2002 Sep;117(1-2):209-15.

28.

Hox protein mutation and macroevolution of the insect body plan.

Ronshaugen M, McGinnis N, McGinnis W.

Nature. 2002 Feb 21;415(6874):914-7. Epub 2002 Feb 6.

PMID:
11859370
29.

The epithelium-specific ETS protein EHF/ESE-3 is a context-dependent transcriptional repressor downstream of MAPK signaling cascades.

Tugores A, Le J, Sorokina I, Snijders AJ, Duyao M, Reddy PS, Carlee L, Ronshaugen M, Mushegian A, Watanaskul T, Chu S, Buckler A, Emtage S, McCormick MK.

J Biol Chem. 2001 Jun 8;276(23):20397-406. Epub 2001 Mar 19.

30.
31.

Homeobrain, a novel paired-like homeobox gene is expressed in the Drosophila brain.

Walldorf U, Kiewe A, Wickert M, Ronshaugen M, McGinnis W.

Mech Dev. 2000 Aug;96(1):141-4.

32.

spen encodes an RNP motif protein that interacts with Hox pathways to repress the development of head-like sclerites in the Drosophila trunk.

Wiellette EL, Harding KW, Mace KA, Ronshaugen MR, Wang FY, McGinnis W.

Development. 1999 Dec;126(23):5373-85.

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